PDB Chemical Component APV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for APV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.531	1.506
C1	O19	1.193	1.208
C1	O20	1.326	1.343
C2	C3	1.526	1.530
C2	N14	1.460	1.469
C2	H2	1.100	1.090
C3	C4	1.546	1.529
C3	H3C1	1.100	1.090
C3	H3C2	1.100	1.090
C4	C7	1.535	1.529
C4	H4C1	1.100	1.090
C4	H4C2	1.100	1.090
C7	C10	1.509	1.506
C7	H7C1	1.100	1.090
C7	H7C2	1.100	1.090
C10	N11	1.353	1.347
C10	O15	1.232	1.212
N11	C12	1.443	1.465
N11	H11	0.995	0.969
C12	C13	1.549	1.515
C12	C16	1.553	1.530
C12	H12	1.100	1.090
C13	O18	1.209	1.213
C13	N29	1.399	1.373
N14	H141	1.030	1.009
N14	H142	1.030	1.008
C16	S17	1.794	1.838
C16	N29	1.477	1.482
C16	H16	1.100	1.090
S17	C32	1.863	1.849
O20	H20	0.950	0.966
N29	C30	1.471	1.489
C30	C31	1.459	1.507
C30	C32	1.577	1.553
C30	H30	1.100	1.090
C31	O42	1.219	1.208
C31	O43	1.373	1.342
C32	C33	1.540	1.530
C32	H32	1.101	1.090
C33	O32	1.414	1.429
C33	H331	1.100	1.090
C33	H332	1.100	1.089
O32	HA	0.990	0.967
O43	H43	0.950	0.967

Bond Angles for APV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O19	126.2	120.0
C2	C1	O20	111.2	120.0
C1	C2	C3	111.2	109.5
C1	C2	N14	110.1	109.5
C1	C2	H2	110.3	109.5
O19	C1	O20	122.6	120.0
C1	O20	H20	111.3	120.0
C3	C2	N14	115.9	109.5
C3	C2	H2	103.8	109.4
C2	C3	C4	110.5	109.6
C2	C3	H3C1	109.2	109.5
C2	C3	H3C2	108.9	109.5
N14	C2	H2	105.1	109.4
C2	N14	H141	109.5	106.7
C2	N14	H142	109.5	106.7
C4	C3	H3C1	109.2	109.5
C4	C3	H3C2	108.9	109.5
C3	C4	C7	113.8	109.5
C3	C4	H4C1	108.4	109.5
C3	C4	H4C2	107.0	109.4
H3C1	C3	H3C2	110.1	109.4
C7	C4	H4C1	108.4	109.5
C7	C4	H4C2	106.9	109.5
C4	C7	C10	110.3	109.5
C4	C7	H7C1	109.3	109.5
C4	C7	H7C2	109.0	109.5
H4C1	C4	H4C2	112.5	109.4
C10	C7	H7C1	109.3	109.5
C10	C7	H7C2	109.0	109.5
C7	C10	N11	116.0	120.0
C7	C10	O15	121.0	120.0
H7C1	C7	H7C2	110.0	109.4
N11	C10	O15	123.0	120.0
C10	N11	C12	122.3	120.0
C10	N11	H11	118.9	120.0
C12	N11	H11	118.9	120.0
N11	C12	C13	119.0	113.7
N11	C12	C16	117.2	113.7
N11	C12	H12	92.9	113.0
C13	C12	C16	84.0	86.4
C13	C12	H12	122.6	113.8
C12	C13	O18	136.3	134.1
C12	C13	N29	93.4	91.8
C16	C12	H12	124.2	113.8
C12	C16	S17	122.2	114.1
C12	C16	N29	90.3	87.1
C12	C16	H16	112.3	115.9
O18	C13	N29	130.3	134.1
C13	N29	C16	92.4	93.7
C13	N29	C30	133.6	115.7
H141	N14	H142	109.4	106.6
S17	C16	N29	102.6	104.3
S17	C16	H16	101.8	115.0
C16	S17	C32	92.1	97.1
N29	C16	H16	129.6	116.7
C16	N29	C30	118.7	114.3
S17	C32	C30	101.7	98.6
S17	C32	C33	112.5	111.6
S17	C32	H32	114.0	111.6
N29	C30	C31	112.7	108.3
N29	C30	C32	106.0	112.0
N29	C30	H30	111.8	109.4
C31	C30	C32	115.2	109.0
C31	C30	H30	101.9	109.0
C30	C31	O42	126.4	120.0
C30	C31	O43	110.7	120.0
C32	C30	H30	109.2	109.0
C30	C32	C33	113.4	111.6
C30	C32	H32	113.2	111.6
O42	C31	O43	122.7	120.0
C31	O43	H43	110.6	119.9
C33	C32	H32	102.5	111.3
C32	C33	O32	117.8	109.5
C32	C33	H331	107.3	109.5
C32	C33	H332	104.6	109.4
O32	C33	H331	107.3	109.4
O32	C33	H332	104.6	109.5
C33	O32	HA	109.5	106.8
H331	C33	H332	115.6	109.5

Torsion Angles for APV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O19	C1	C2	O20	179.7	179.9
C2	C1	O20	H20	180.0	180.0
C3	C2	C1	N14	129.8	120.1
C3	C2	C1	H2	245.4	240.0
C1	C2	C3	C4	179.5	180.0
C1	C2	C3	H3C1	299.7	300.0
C1	C2	C3	H3C2	60.0	59.9
N14	C2	C1	H2	115.5	120.0
C1	C2	N14	H141	276.3	60.0
C1	C2	N14	H142	36.3	173.7
C2	C1	O19	O20	180.4	180.1
O19	C1	C2	C3	111.0	90.0
O19	C1	C2	N14	341.1	330.0
O19	C1	C2	H2	225.6	210.0
O19	C1	O20	H20	0.3	0.1
C2	C1	O20	O19	179.7	179.9
O20	C1	C2	C3	291.3	270.1
O20	C1	C2	N14	161.4	150.0
O20	C1	C2	H2	45.9	30.0
C3	C2	C1	O19	111.0	90.0
C3	C2	C1	O20	291.3	270.1
C1	C2	C3	N14	233.3	239.9
C1	C2	C3	H2	118.6	120.0
N14	C2	C3	H2	245.4	240.1
C3	C2	N14	H141	149.0	299.9
C3	C2	N14	H142	269.0	53.6
C4	C3	C2	H3C1	239.8	240.0
C4	C3	C2	H3C2	119.5	120.0
C2	C3	C4	C7	179.1	180.0
C2	C3	C4	H4C1	299.8	300.0
C2	C3	C4	H4C2	61.3	59.9
H3C1	C3	C2	H3C2	239.7	240.1
N14	C2	C1	O19	341.1	330.0
N14	C2	C1	O20	161.4	150.0
C1	C2	N14	C3	127.3	120.1
C1	C2	N14	H2	241.2	240.0
C3	C2	N14	H2	113.9	119.9
N14	C2	C3	C4	306.3	300.1
N14	C2	C3	H3C1	66.4	60.1
N14	C2	C3	H3C2	186.7	180.0
H141	N14	C2	H142	240.0	246.3
H2	C2	C1	O19	225.6	210.0
H2	C2	C1	O20	45.9	30.0
C1	C2	H2	C3	240.7	239.9
C1	C2	H2	N14	118.6	120.0
C3	C2	H2	N14	237.9	240.1
H2	C2	C3	C4	60.9	60.0
H2	C2	C3	H3C1	181.0	180.0
H2	C2	C3	H3C2	301.3	299.9
H2	C2	N14	H141	35.1	180.1
H2	C2	N14	H142	155.1	293.7
C4	C3	C2	N14	306.3	300.1
C4	C3	C2	H2	60.9	60.0
C2	C3	C4	H3C1	120.2	120.0
C2	C3	C4	H3C2	240.5	240.0
H3C1	C3	C4	H3C2	120.3	119.9
C7	C4	C3	H4C1	239.4	240.0
C7	C4	C3	H4C2	117.9	120.1
C3	C4	C7	C10	189.1	180.0
C3	C4	C7	H7C1	309.3	300.0
C3	C4	C7	H7C2	69.5	60.0
H4C1	C4	C3	H4C2	238.5	240.1
H3C1	C3	C2	N14	66.4	60.1
H3C1	C3	C2	H2	181.0	180.0
C2	C3	H3C1	C4	239.0	239.9
C2	C3	H3C1	H3C2	119.5	120.0
C4	C3	H3C1	H3C2	240.5	240.0
H3C1	C3	C4	C7	59.0	60.0
H3C1	C3	C4	H4C1	179.6	180.0
H3C1	C3	C4	H4C2	301.1	299.9
H3C2	C3	C2	N14	186.7	180.0
H3C2	C3	C2	H2	301.3	299.9
C2	C3	H3C2	C4	120.5	120.1
C2	C3	H3C2	H3C1	240.3	240.1
C4	C3	H3C2	H3C1	119.7	120.0
H3C2	C3	C4	C7	298.6	300.0
H3C2	C3	C4	H4C1	59.3	60.1
H3C2	C3	C4	H4C2	180.8	180.0
C7	C4	C3	H3C1	59.0	60.0
C7	C4	C3	H3C2	298.6	300.0
C3	C4	C7	H4C1	120.7	120.0
C3	C4	C7	H4C2	242.1	240.0
H4C1	C4	C7	H4C2	121.5	120.0
C10	C7	C4	H7C1	239.9	240.0
C10	C7	C4	H7C2	119.7	120.0
C4	C7	C10	N11	230.5	180.0
C4	C7	C10	O15	50.4	360.0
H7C1	C7	C4	H7C2	239.8	240.1
H4C1	C4	C3	H3C1	179.6	180.0
H4C1	C4	C3	H3C2	59.3	60.1
C3	C4	H4C1	C7	236.1	239.9
C3	C4	H4C1	H4C2	118.1	119.9
C7	C4	H4C1	H4C2	242.0	240.0
H4C1	C4	C7	C10	68.5	60.0
H4C1	C4	C7	H7C1	188.6	180.0
H4C1	C4	C7	H7C2	308.8	299.9
H4C2	C4	C3	H3C1	301.1	299.9
H4C2	C4	C3	H3C2	180.8	180.0
C3	C4	H4C2	C7	122.2	120.1
C3	C4	H4C2	H4C1	241.1	240.1
C7	C4	H4C2	H4C1	118.9	120.0
H4C2	C4	C7	C10	307.0	300.0
H4C2	C4	C7	H7C1	67.1	60.0
H4C2	C4	C7	H7C2	187.4	180.0
C10	C7	C4	H4C1	68.5	60.0
C10	C7	C4	H4C2	307.0	300.0
C4	C7	C10	H7C1	120.1	120.0
C4	C7	C10	H7C2	240.3	240.0
H7C1	C7	C10	H7C2	120.2	120.0
N11	C10	C7	O15	180.1	180.0
C7	C10	N11	C12	193.1	180.0
C7	C10	N11	H11	13.2	359.9
H7C1	C7	C4	H4C1	188.6	180.0
H7C1	C7	C4	H4C2	67.1	60.0
C4	C7	H7C1	C10	239.3	240.0
C4	C7	H7C1	H7C2	119.6	120.0
C10	C7	H7C1	H7C2	240.3	240.0
H7C1	C7	C10	N11	110.4	60.0
H7C1	C7	C10	O15	290.3	240.0
H7C2	C7	C4	H4C1	308.8	299.9
H7C2	C7	C4	H4C2	187.4	180.0
C4	C7	H7C2	C10	120.4	120.1
C4	C7	H7C2	H7C1	240.2	240.0
C10	C7	H7C2	H7C1	119.8	120.0
H7C2	C7	C10	N11	350.2	300.0
H7C2	C7	C10	O15	170.0	120.0
N11	C10	C7	H7C1	110.4	60.0
N11	C10	C7	H7C2	350.2	300.0
C7	C10	N11	O15	179.9	180.0
C12	N11	C10	H11	180.0	180.0
C10	N11	C12	C13	293.8	248.7
C10	N11	C12	C16	195.1	152.0
C10	N11	C12	H12	63.9	20.3
O15	C10	C7	H7C1	290.3	240.0
O15	C10	C7	H7C2	170.0	120.0
C7	C10	O15	N11	180.1	180.0
O15	C10	N11	C12	13.2	0.0
O15	C10	N11	H11	193.3	180.0
C12	N11	C10	O15	13.2	0.0
C10	N11	C12	H11	180.0	180.0
C13	C12	N11	C16	98.6	96.8
C13	C12	N11	H12	229.9	228.4
N11	C12	C13	O18	63.4	71.7
N11	C12	C13	N29	241.8	253.5
C16	C12	N11	H12	131.2	131.6
N11	C12	C16	S17	15.0	2.6
N11	C12	C16	N29	120.0	107.1
N11	C12	C16	H16	253.7	225.5
H11	N11	C10	O15	193.3	180.0
C10	N11	H11	C12	180.0	180.0
H11	N11	C12	C13	113.7	68.8
H11	N11	C12	C16	15.1	332.0
H11	N11	C12	H12	243.8	200.4
C13	C12	N11	H11	113.7	68.8
N11	C12	C13	C16	242.2	245.6
N11	C12	C13	H12	115.0	131.2
C16	C12	C13	H12	232.8	245.6
C13	C12	C16	S17	255.4	248.3
C13	C12	C16	N29	0.4	352.7
C13	C12	C16	H16	134.1	111.1
O18	C13	C12	N29	181.6	178.3
C12	C13	N29	C16	0.4	351.9
C12	C13	N29	C30	135.1	111.2
C16	C12	N11	H11	15.1	332.0
N11	C12	C16	C13	119.6	114.3
N11	C12	C16	H12	245.3	228.8
C13	C12	C16	H12	125.7	114.4
C16	C12	C13	O18	181.2	186.1
C16	C12	C13	N29	359.6	7.8
C13	N29	C16	C12	359.6	8.0
S17	C16	C12	N29	255.0	255.6
S17	C16	C12	H16	121.3	137.2
C12	C16	S17	C32	133.7	112.1
N29	C16	C12	H16	226.3	241.6
C12	C16	N29	C30	215.6	247.6
H12	C12	N11	H11	243.8	200.4
N11	C12	H12	C13	232.5	228.4
N11	C12	H12	C16	126.0	131.6
C13	C12	H12	C16	253.4	263.2
H12	C12	C13	O18	308.4	300.5
H12	C12	C13	N29	126.7	122.2
H12	C12	C16	S17	129.7	133.9
H12	C12	C16	N29	234.7	238.3
H12	C12	C16	H16	8.4	356.7
O18	C13	C12	C16	181.2	186.1
O18	C13	C12	H12	308.4	300.5
C12	C13	O18	N29	177.9	182.4
O18	C13	N29	C16	179.0	173.6
O18	C13	N29	C30	313.6	292.9
N29	C13	C12	C16	359.6	7.8
N29	C13	C12	H12	126.7	122.2
C12	C13	N29	O18	181.5	178.3
C12	C16	N29	C13	359.6	8.0
S17	C16	N29	C13	122.7	122.2
C13	N29	C16	H16	239.8	250.3
C16	N29	C13	C30	225.3	240.7
C13	N29	C30	C31	98.8	105.0
C13	N29	C30	C32	225.8	225.2
C13	N29	C30	H30	344.7	346.2
H141	N14	C2	H2	35.1	180.1
C2	N14	H141	H142	120.0	113.7
H142	N14	C2	H2	155.1	293.7
C2	N14	H142	H141	240.0	246.3
S17	C16	C12	H12	129.7	133.9
C12	C16	S17	N29	98.4	93.3
C12	C16	S17	H16	233.9	222.4
C13	N29	C16	S17	122.7	122.2
N29	C16	S17	H16	135.5	129.1
S17	C16	N29	C30	338.7	1.8
C16	S17	C32	C30	319.7	328.5
C16	S17	C32	C33	81.3	85.9
C16	S17	C32	H32	197.5	211.2
N29	C16	C12	H12	234.7	238.3
C12	C16	N29	S17	236.9	245.8
C12	C16	N29	H16	119.7	117.7
C13	N29	C16	C30	144.0	120.4
S17	C16	N29	H16	242.8	231.9
N29	C16	S17	C32	35.3	18.8
C16	N29	C30	C31	224.7	212.1
C16	N29	C30	C32	351.6	332.4
C16	N29	C30	H30	110.5	93.4
H16	C16	C12	H12	8.4	356.7
C12	C16	H16	S17	132.4	136.8
C12	C16	H16	N29	249.8	259.5
S17	C16	H16	N29	117.5	122.7
H16	C16	S17	C32	259.8	249.7
H16	C16	N29	C30	95.8	129.9
C32	S17	C16	N29	35.3	18.8
C32	S17	C16	H16	259.8	249.7
N29	C30	C32	S17	32.6	37.3
C31	C30	C32	S17	158.0	157.2
S17	C32	C30	H30	271.9	276.1
C30	C32	S17	C33	238.4	242.6
C30	C32	S17	H32	122.2	117.3
C33	C32	S17	H32	243.8	234.8
S17	C32	C33	O32	359.5	61.5
S17	C32	C33	H331	120.7	181.5
S17	C32	C33	H332	244.0	301.4
C13	N29	C30	C16	234.1	252.8
C30	N29	C16	H16	95.8	129.9
S17	C32	C30	N29	32.6	37.3
C31	C30	N29	C32	233.1	239.7
C31	C30	N29	H30	114.2	118.7
N29	C30	C31	O42	168.1	3.5
N29	C30	C31	O43	342.3	183.5
C32	C30	N29	H30	241.1	239.0
N29	C30	C32	C33	271.6	279.9
N29	C30	C32	H32	155.3	154.6
S17	C32	C30	C31	158.0	157.2
N29	C30	C31	C32	121.9	122.1
N29	C30	C31	H30	239.9	241.0
C32	C30	C31	H30	118.1	118.9
C31	C30	C32	C33	37.0	39.8
C31	C30	C32	H32	280.8	274.5
O42	C31	C30	O43	185.8	180.0
C30	C31	O43	H43	180.0	180.0
S17	C32	C30	C33	121.0	117.4
S17	C32	C30	H32	237.2	242.6
N29	C30	C32	C31	234.6	240.1
N29	C30	C32	H30	120.7	121.2
C31	C30	C32	H30	246.1	241.1
C32	C30	C31	O42	46.3	241.4
C32	C30	C31	O43	220.5	61.4
C33	C32	C30	H32	116.2	125.3
C30	C32	C33	O32	114.2	170.7
C30	C32	C33	H331	235.4	290.7
C30	C32	C33	H332	358.7	50.7
N29	C30	H30	C31	120.7	118.3
N29	C30	H30	C32	243.0	237.2
C31	C30	H30	C32	122.3	118.9
H30	C30	C31	O42	288.2	122.5
H30	C30	C31	O43	102.4	302.5
H30	C30	C32	C33	150.9	158.7
H30	C30	C32	H32	34.7	33.4
O42	C31	C30	C32	46.3	241.4
O42	C31	C30	H30	288.2	122.5
C30	C31	O42	O43	173.5	180.0
O42	C31	O43	H43	354.5	360.0
O43	C31	C30	C32	220.5	61.4
O43	C31	C30	H30	102.4	302.5
C30	C31	O43	O42	185.5	180.0
S17	C32	C33	C30	245.3	250.8
S17	C32	C33	H32	122.9	125.4
C33	C32	C30	H30	150.9	158.7
C30	C32	C33	H32	237.6	234.6
O32	C33	C32	H331	238.8	240.0
O32	C33	C32	H332	115.5	120.1
C32	C33	O32	HA	183.9	180.0
H331	C33	C32	H332	236.7	240.0
S17	C32	H32	C30	115.6	109.2
S17	C32	H32	C33	238.1	234.6
H32	C32	C30	H30	34.7	33.4
C30	C32	H32	C33	122.5	125.4
H32	C32	C33	O32	236.6	296.1
H32	C32	C33	H331	357.8	56.1
H32	C32	C33	H332	121.0	176.0
O32	C33	C32	H32	236.6	296.1
C32	C33	O32	H331	121.2	120.0
C32	C33	O32	H332	244.4	240.0
H331	C33	O32	H332	123.3	120.0
H331	C33	C32	H32	357.8	56.1
C32	C33	H331	O32	232.5	240.0
C32	C33	H331	H332	116.2	120.0
O32	C33	H331	H332	243.8	239.9
H331	C33	O32	HA	62.7	60.0
H332	C33	C32	H32	121.0	176.0
C32	C33	H332	O32	124.4	120.0
C32	C33	H332	H331	242.2	240.0
O32	C33	H332	H331	117.8	120.0
H332	C33	O32	HA	299.5	300.0
HA	O32	C33	H331	62.7	60.0
HA	O32	C33	H332	299.5	300.0