PDB Chemical Component AP9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AP9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C15 1.433 1.429
O1 HO1 0.950 0.968
C15 C12 1.533 1.530
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C12 C13 1.527 1.529
C12 N2 1.460 1.466
C12 H12 1.100 1.089
C13 C14 1.525 1.530
C13 C16 1.526 1.530
C13 H13 1.100 1.090
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C14 H143 1.100 1.089
C16 H161 1.101 1.090
C16 H162 1.099 1.090
C16 H163 1.100 1.091
N2 C2 1.361 1.385
N2 HN2 1.000 0.970
C2 N3 1.359 1.324
C2 N1 1.372 1.326
N3 C4 1.353 1.329
C4 C5 1.470 1.405
C4 N9 1.346 1.372
C5 N7 1.346 1.356
C5 C6 1.494 1.405
N7 C8 1.357 1.301
C8 N9 1.346 1.364
C8 H8 1.080 1.080
N9 C9 1.501 1.466
C9 C10 1.527 1.531
C9 C11 1.532 1.530
C9 H9 1.100 1.089
C10 H101 1.100 1.090
C10 H102 1.100 1.090
C10 H103 1.100 1.089
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C6 N1 1.364 1.329
C6 N6 1.360 1.385
N6 C1A 1.351 1.398
N6 HN6 1.000 0.969
C1A C2A 1.399 1.388
C1A C6A 1.396 1.390
C2A C3A 1.396 1.388
C2A H2A 1.080 1.080
C3A N10 1.352 1.396
C3A C4A 1.392 1.390
N10 H11 0.999 0.971
N10 H12A 1.000 0.970
C4A C5A 1.397 1.383
C4A H4A 1.080 1.080
C5A CL1 1.501 1.736
C5A C6A 1.402 1.383
C6A H6A 1.080 1.080

Bond Angles for AP9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C15 O1 HO1 109.5 106.8
O1 C15 C12 109.2 109.5
O1 C15 H151 109.6 109.4
O1 C15 H152 109.6 109.5
C12 C15 H151 109.6 109.5
C12 C15 H152 109.6 109.5
C15 C12 C13 114.6 109.5
C15 C12 N2 112.1 109.4
C15 C12 H12 104.0 109.5
H151 C15 H152 109.3 109.5
C13 C12 N2 109.9 109.5
C13 C12 H12 106.5 109.5
C12 C13 C14 110.2 109.4
C12 C13 C16 111.3 109.4
C12 C13 H13 108.0 109.5
N2 C12 H12 109.3 109.5
C12 N2 C2 128.2 120.0
C12 N2 HN2 115.9 120.0
C14 C13 C16 110.5 109.5
C14 C13 H13 108.9 109.5
C13 C14 H141 109.5 109.5
C13 C14 H142 109.4 109.4
C13 C14 H143 109.5 109.5
C16 C13 H13 107.8 109.5
C13 C16 H161 109.5 109.5
C13 C16 H162 109.5 109.5
C13 C16 H163 109.5 109.5
H141 C14 H142 109.5 109.5
H141 C14 H143 109.5 109.5
H142 C14 H143 109.4 109.5
H161 C16 H162 109.5 109.5
H161 C16 H163 109.5 109.4
H162 C16 H163 109.5 109.5
C2 N2 HN2 115.9 120.1
N2 C2 N3 114.7 118.8
N2 C2 N1 123.2 118.9
N3 C2 N1 122.0 122.3
C2 N3 C4 122.7 120.6
C2 N1 C6 121.8 121.1
N3 C4 C5 117.8 119.1
N3 C4 N9 135.1 134.8
C5 C4 N9 107.2 106.0
C4 C5 N7 105.9 107.1
C4 C5 C6 118.3 118.3
C4 N9 C8 107.5 107.5
C4 N9 C9 128.4 126.3
N7 C5 C6 135.8 134.5
C5 N7 C8 108.0 109.5
C5 C6 N1 117.3 118.6
C5 C6 N6 119.0 120.7
N7 C8 N9 111.5 109.9
N7 C8 H8 124.2 125.0
N9 C8 H8 124.2 125.0
C8 N9 C9 124.2 126.3
N9 C9 C10 107.4 109.4
N9 C9 C11 113.3 109.5
N9 C9 H9 107.4 109.4
C10 C9 C11 106.5 109.5
C10 C9 H9 114.1 109.5
C9 C10 H101 109.4 109.4
C9 C10 H102 109.5 109.5
C9 C10 H103 109.5 109.5
C11 C9 H9 108.3 109.5
C9 C11 H111 109.5 109.5
C9 C11 H112 109.5 109.5
C9 C11 H113 109.5 109.4
H101 C10 H102 109.5 109.5
H101 C10 H103 109.5 109.5
H102 C10 H103 109.4 109.5
H111 C11 H112 109.5 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.5 109.5
N1 C6 N6 123.7 120.7
C6 N6 C1A 128.9 120.0
C6 N6 HN6 115.6 120.0
C1A N6 HN6 115.5 120.0
N6 C1A C2A 118.4 120.1
N6 C1A C6A 122.1 120.0
C2A C1A C6A 119.4 119.9
C1A C2A C3A 121.1 119.9
C1A C2A H2A 119.5 120.1
C1A C6A C5A 119.3 120.1
C1A C6A H6A 120.3 120.0
C3A C2A H2A 119.5 120.0
C2A C3A N10 120.1 120.1
C2A C3A C4A 119.6 119.9
N10 C3A C4A 120.3 120.0
C3A N10 H11 109.5 120.0
C3A N10 H12A 109.5 120.1
C3A C4A C5A 119.5 120.0
C3A C4A H4A 120.3 120.0
H11 N10 H12A 109.4 120.0
C5A C4A H4A 120.2 120.0
C4A C5A CL1 118.8 119.9
C4A C5A C6A 121.0 120.1
CL1 C5A C6A 120.2 120.0
C5A C6A H6A 120.3 119.9

Torsion Angles for AP9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C12 C15 O1 H151 120.1 120.0
C12 C15 O1 H152 240.0 240.0
O1 C15 C12 C13 240.1 55.7
O1 C15 C12 N2 114.0 295.8
O1 C15 C12 H12 355.9 175.8
H151 C15 O1 H152 119.9 120.0
HO1 O1 C15 C12 193.7 180.1
HO1 O1 C15 H151 73.6 60.0
HO1 O1 C15 H152 313.7 300.1
C12 C15 O1 HO1 193.7 180.1
O1 C15 C12 H151 239.9 240.0
O1 C15 C12 H152 120.0 120.0
H151 C15 C12 H152 240.1 240.0
C13 C12 C15 N2 126.1 120.0
C13 C12 C15 H12 244.1 239.9
C15 C12 C13 C14 191.8 63.4
C15 C12 C13 C16 68.8 183.4
C15 C12 C13 H13 310.7 303.4
N2 C12 C15 H12 118.0 120.0
C15 C12 N2 C2 44.5 275.0
C15 C12 N2 HN2 224.5 95.1
H151 C15 O1 HO1 73.6 60.0
O1 C15 H151 C12 119.9 120.0
O1 C15 H151 H152 239.9 240.0
C12 C15 H151 H152 120.1 120.0
H151 C15 C12 C13 0.2 175.7
H151 C15 C12 N2 234.1 55.7
H151 C15 C12 H12 116.0 295.8
H152 C15 O1 HO1 313.7 300.1
O1 C15 H152 C12 240.2 240.0
O1 C15 H152 H151 120.1 119.9
C12 C15 H152 H151 239.9 240.0
H152 C15 C12 C13 120.0 295.7
H152 C15 C12 N2 353.9 175.8
H152 C15 C12 H12 235.9 55.8
C13 C12 C15 H151 0.2 175.7
C13 C12 C15 H152 120.0 295.7
C15 C12 C13 N2 232.8 240.1
C15 C12 C13 H12 114.4 120.0
N2 C12 C13 H12 241.7 240.0
C13 C12 N2 C2 275.9 155.0
C13 C12 N2 HN2 95.8 335.1
C14 C13 C12 C16 123.0 240.0
C14 C13 C12 H13 241.1 120.0
C12 C13 C14 H141 142.7 54.2
C12 C13 C14 H142 22.7 174.1
C12 C13 C14 H143 262.7 294.1
C16 C13 C12 H13 118.1 240.0
C12 C13 C16 H161 178.6 300.0
C12 C13 C16 H162 58.6 60.0
C12 C13 C16 H163 298.7 180.1
N2 C12 C15 H151 234.1 55.7
N2 C12 C15 H152 353.9 175.8
C15 C12 N2 C13 128.6 120.0
C15 C12 N2 H12 245.2 240.0
C13 C12 N2 H12 116.5 120.1
N2 C12 C13 C14 319.0 183.4
N2 C12 C13 C16 196.1 303.4
N2 C12 C13 H13 77.9 63.4
C2 N2 C12 HN2 180.0 179.9
C12 N2 C2 N3 185.3 179.8
C12 N2 C2 N1 5.7 0.0
H12 C12 C15 H151 116.0 295.8
H12 C12 C15 H152 235.9 55.8
C15 C12 H12 C13 238.6 240.0
C15 C12 H12 N2 119.9 119.9
C13 C12 H12 N2 241.3 240.0
H12 C12 C13 C14 77.4 303.4
H12 C12 C13 C16 314.4 63.4
H12 C12 C13 H13 196.3 183.4
H12 C12 N2 C2 159.3 35.0
H12 C12 N2 HN2 339.3 215.0
C14 C13 C12 N2 319.0 183.4
C14 C13 C12 H12 77.4 303.4
C12 C13 C14 C16 236.5 120.0
C12 C13 C14 H13 118.3 240.0
C16 C13 C14 H13 241.8 120.0
C14 C13 C16 H161 55.8 60.0
C14 C13 C16 H162 295.8 180.0
C14 C13 C16 H163 175.8 300.0
H141 C14 C13 H142 120.0 240.1
H141 C14 C13 H143 240.0 120.1
H142 C14 C13 H143 120.0 240.0
C16 C13 C12 N2 196.1 303.4
C16 C13 C12 H12 314.4 63.4
C12 C13 C16 C14 122.8 240.0
C12 C13 C16 H13 241.7 120.0
C14 C13 C16 H13 118.9 240.0
C16 C13 C14 H141 266.2 294.2
C16 C13 C14 H142 146.2 54.2
C16 C13 C14 H143 26.2 174.2
H161 C16 C13 H162 120.0 240.0
H161 C16 C13 H163 240.0 120.0
H162 C16 C13 H163 120.0 240.0
H13 C13 C12 N2 77.9 63.4
H13 C13 C12 H12 196.3 183.4
C12 C13 H13 C14 240.3 120.0
C12 C13 H13 C16 120.4 240.0
C14 C13 H13 C16 240.1 120.0
H13 C13 C14 H141 24.4 174.2
H13 C13 C14 H142 264.4 294.1
H13 C13 C14 H143 144.4 54.1
H13 C13 C16 H161 296.9 180.0
H13 C13 C16 H162 176.9 300.0
H13 C13 C16 H163 56.9 60.0
H141 C14 C13 C16 266.2 294.2
H141 C14 C13 H13 24.4 174.2
C13 C14 H141 H142 240.0 119.9
C13 C14 H141 H143 120.0 240.0
H142 C14 H141 H143 240.0 120.1
H142 C14 C13 C16 146.2 54.2
H142 C14 C13 H13 264.4 294.1
C13 C14 H142 H141 120.0 240.1
C13 C14 H142 H143 240.0 120.0
H141 C14 H142 H143 120.0 239.9
H143 C14 C13 C16 26.2 174.2
H143 C14 C13 H13 144.4 54.1
C13 C14 H143 H141 240.0 120.0
C13 C14 H143 H142 120.0 240.1
H141 C14 H143 H142 240.0 120.0
H161 C16 C13 H13 296.9 180.0
C13 C16 H161 H162 240.0 120.0
C13 C16 H161 H163 120.0 240.0
H162 C16 H161 H163 240.0 120.0
H162 C16 C13 H13 176.9 300.0
C13 C16 H162 H161 120.0 240.0
C13 C16 H162 H163 240.0 120.0
H161 C16 H162 H163 120.0 240.1
H163 C16 C13 H13 56.9 60.0
C13 C16 H163 H161 240.0 120.0
C13 C16 H163 H162 120.0 239.9
H161 C16 H163 H162 240.0 120.0
C2 N2 C12 H12 159.3 35.0
C12 N2 C2 HN2 180.0 180.1
N3 C2 N2 N1 179.6 179.8
N2 C2 N3 C4 180.0 179.7
N2 C2 N1 C6 179.5 180.0
HN2 N2 C12 H12 339.3 215.0
C12 N2 HN2 C2 180.0 179.9
HN2 N2 C2 N3 5.4 359.7
HN2 N2 C2 N1 185.8 179.9
N3 C2 N2 HN2 5.4 359.7
N2 C2 N3 N1 180.4 180.2
N3 C2 N1 C6 359.9 0.2
C2 N3 C4 C5 0.1 0.6
C2 N3 C4 N9 180.0 180.2
N1 C2 N2 HN2 185.8 179.9
N2 C2 N1 N3 179.6 179.8
N1 C2 N3 C4 359.6 359.5
C5 C6 N1 C2 0.7 0.0
C2 N1 C6 N6 178.7 180.1
C4 N3 C2 N1 359.6 359.5
C5 C4 N3 N9 180.1 180.4
N3 C4 C5 N7 180.0 179.7
N3 C4 C5 C6 0.6 359.7
N3 C4 N9 C8 179.9 180.3
N3 C4 N9 C9 0.5 0.3
N3 C4 C5 N9 179.9 179.7
C5 C4 N9 C8 359.8 360.0
C5 C4 N9 C9 180.4 179.9
N7 C5 C4 C6 179.4 180.1
C4 C5 N7 C8 0.0 360.0
C4 C5 C6 N1 359.0 0.0
C4 C5 C6 N6 181.0 180.0
N3 C4 N9 C5 180.1 180.4
N9 C4 C5 N7 0.1 0.0
N9 C4 C5 C6 180.7 180.0
N7 C8 N9 C4 0.3 360.0
C4 N9 C8 H8 180.3 180.0
C8 N9 C4 C9 179.4 180.1
C4 N9 C9 C10 116.5 120.0
C4 N9 C9 C11 359.2 240.0
C4 N9 C9 H9 239.6 0.1
N7 C5 C4 N9 0.1 0.0
C4 C5 N7 C6 180.7 179.9
N7 C5 C6 N1 179.8 179.9
N7 C5 C6 N6 1.7 359.9
C5 N7 C8 N9 359.8 0.0
C5 N7 C8 H8 179.8 180.0
C2 N1 C6 C5 0.7 0.0
C6 C5 C4 N9 180.7 180.0
C4 C5 C6 N7 179.2 180.1
C6 C5 N7 C8 179.3 180.0
N1 C6 C5 N6 178.1 180.0
C5 C6 N6 C1A 212.7 174.8
C5 C6 N6 HN6 32.7 354.9
C4 N9 C8 N7 0.3 360.0
C8 N7 C5 C6 179.3 180.0
N9 C8 N7 H8 180.0 180.0
N7 C8 N9 C9 179.7 180.1
C4 N9 C8 C9 180.5 179.9
N7 C8 N9 H8 180.0 180.0
C8 N9 C9 C10 297.1 299.9
C8 N9 C9 C11 179.9 59.9
C8 N9 C9 H9 60.3 180.0
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C9 359.7 0.1
C4 N9 C9 C8 179.3 180.1
C9 N9 C8 H8 359.7 0.1
C10 C9 N9 C11 117.3 240.0
C10 C9 N9 H9 236.8 120.0
N9 C9 C10 H101 289.3 180.0
N9 C9 C10 H102 169.3 299.9
N9 C9 C10 H103 49.3 60.0
C11 C9 N9 H9 119.6 240.0
N9 C9 C11 H111 19.2 60.0
N9 C9 C11 H112 259.2 180.0
N9 C9 C11 H113 139.2 300.0
N9 C9 C10 C11 238.3 120.0
N9 C9 C10 H9 118.9 240.0
C11 C9 C10 H9 240.6 120.1
C10 C9 C11 H111 261.4 180.0
C10 C9 C11 H112 141.4 300.0
C10 C9 C11 H113 21.4 60.0
H101 C10 C9 H102 120.0 240.1
H101 C10 C9 H103 240.0 120.0
H102 C10 C9 H103 120.0 239.9
N9 C9 C11 C10 117.8 240.0
N9 C9 C11 H9 240.9 120.0
C10 C9 C11 H9 123.2 239.9
C11 C9 C10 H101 51.0 60.0
C11 C9 C10 H102 291.0 180.0
C11 C9 C10 H103 171.0 300.1
H111 C11 C9 H112 120.0 240.0
H111 C11 C9 H113 240.0 120.0
H112 C11 C9 H113 120.0 240.0
N9 C9 H9 C10 241.1 119.9
N9 C9 H9 C11 122.7 240.0
C10 C9 H9 C11 241.6 120.0
H9 C9 C10 H101 170.4 300.0
H9 C9 C10 H102 50.4 59.9
H9 C9 C10 H103 290.4 180.0
H9 C9 C11 H111 138.3 300.0
H9 C9 C11 H112 18.2 60.1
H9 C9 C11 H113 258.3 180.0
H101 C10 C9 C11 51.0 60.0
H101 C10 C9 H9 170.4 300.0
C9 C10 H101 H102 240.0 119.9
C9 C10 H101 H103 120.0 240.0
H102 C10 H101 H103 240.0 120.1
H102 C10 C9 C11 291.0 180.0
H102 C10 C9 H9 50.4 59.9
C9 C10 H102 H101 120.0 240.1
C9 C10 H102 H103 239.9 120.1
H101 C10 H102 H103 120.0 240.0
H103 C10 C9 C11 171.0 300.1
H103 C10 C9 H9 290.4 180.0
C9 C10 H103 H101 240.0 119.9
C9 C10 H103 H102 120.0 240.0
H101 C10 H103 H102 240.0 120.0
H111 C11 C9 H9 138.3 300.0
C9 C11 H111 H112 240.0 120.0
C9 C11 H111 H113 120.0 240.0
H112 C11 H111 H113 240.0 120.0
H112 C11 C9 H9 18.2 60.1
C9 C11 H112 H111 120.0 240.0
C9 C11 H112 H113 240.0 119.9
H111 C11 H112 H113 120.0 239.9
H113 C11 C9 H9 258.3 180.0
C9 C11 H113 H111 240.0 120.0
C9 C11 H113 H112 120.0 240.0
H111 C11 H113 H112 240.0 120.1
C5 C6 N1 N6 182.0 180.0
N1 C6 N6 C1A 34.8 354.8
N1 C6 N6 HN6 214.8 174.8
C5 C6 N6 N1 177.9 180.0
C1A N6 C6 HN6 180.0 180.0
C6 N6 C1A C2A 118.1 326.9
C6 N6 C1A C6A 295.0 146.6
C6 N6 C1A HN6 180.0 180.0
C2A C1A N6 C6A 183.1 180.3
N6 C1A C2A C3A 178.4 180.0
N6 C1A C2A H2A 358.4 360.0
N6 C1A C6A C5A 181.7 179.7
N6 C1A C6A H6A 1.7 0.3
C6 N6 HN6 C1A 180.0 180.0
HN6 N6 C1A C2A 298.1 146.9
HN6 N6 C1A C6A 115.0 326.6
C2A C1A N6 HN6 298.1 146.9
N6 C1A C2A C6A 177.0 179.7
C2A C1A C6A C5A 358.5 359.4
C2A C1A C6A H6A 178.5 180.0
C3A C2A C1A H2A 180.0 180.0
C1A C2A C3A N10 179.3 180.0
C1A C2A C3A C4A 359.3 360.0
C6A C1A N6 HN6 115.0 326.6
N6 C1A C6A C2A 183.2 180.3
C6A C1A C2A C3A 1.4 0.3
C6A C1A C2A H2A 181.4 180.3
C4A C5A C6A C1A 0.8 0.7
CL1 C5A C6A C1A 181.2 180.3
C5A C6A C1A H6A 180.0 179.4
C3A C2A C1A C6A 1.4 0.3
C1A C2A C3A H2A 180.0 180.0
N10 C3A C2A C4A 180.0 180.0
C2A C3A N10 H11 338.2 0.0
C2A C3A N10 H12A 218.2 180.0
C2A C3A C4A C5A 0.0 0.1
C2A C3A C4A H4A 180.1 180.0
H2A C2A C1A C6A 181.4 180.3
C1A C2A H2A C3A 180.0 180.0
H2A C2A C3A N10 359.3 0.0
H2A C2A C3A C4A 179.3 180.0
N10 C3A C2A H2A 359.3 0.0
C2A C3A N10 C4A 180.0 180.0
N10 C3A C4A C5A 180.0 180.0
N10 C3A C4A H4A 0.1 359.9
H11 N10 C3A H12A 120.0 180.0
C4A C3A C2A H2A 179.3 180.0
C2A C3A C4A N10 180.0 180.0
C4A C3A N10 H11 158.2 180.1
C4A C3A N10 H12A 38.2 0.0
C5A C4A C3A H4A 180.0 180.1
C3A C4A C5A CL1 179.5 180.0
C3A C4A C5A C6A 359.9 359.6
H11 N10 C3A C4A 158.2 180.1
C3A N10 H11 H12A 240.0 180.0
H12A N10 C3A C4A 38.2 0.0
C3A N10 H12A H11 120.0 180.0
C1A C6A C5A C4A 0.8 0.7
C3A C4A C5A H4A 180.0 179.9
CL1 C5A C4A C6A 179.7 180.4
C4A C5A C6A H6A 180.9 180.0
C3A C4A H4A C5A 180.0 180.1
H4A C4A C5A CL1 359.5 0.1
H4A C4A C5A C6A 179.9 179.7
C1A C6A C5A CL1 181.2 180.3
CL1 C5A C4A H4A 359.5 0.1
C4A C5A CL1 C6A 180.3 179.6
CL1 C5A C6A H6A 1.2 359.6
C1A C6A C5A H6A 180.0 180.6
C6A C5A C4A H4A 179.9 179.7
C4A C5A C6A CL1 179.7 180.4
C1A C6A H6A C5A 180.0 179.4