PDB Chemical Component AP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.488 |
1.355 |
N1 |
HN1 |
1.000 |
0.970 |
N1 |
HN2 |
1.020 |
0.970 |
C1 |
C2 |
1.443 |
1.468 |
C1 |
C1A |
1.440 |
1.312 |
C2 |
C3 |
1.510 |
1.316 |
C2 |
H2 |
1.000 |
1.080 |
C3 |
C3A |
1.466 |
1.473 |
C3 |
H3 |
1.000 |
1.080 |
C3A |
C4 |
1.451 |
1.312 |
C3A |
C11 |
1.455 |
1.475 |
C4 |
C5 |
1.480 |
1.478 |
C4 |
H4 |
1.000 |
1.079 |
C5 |
C5A |
1.451 |
1.312 |
C5 |
H5 |
0.999 |
1.080 |
C5A |
C6 |
1.460 |
1.473 |
C5A |
C12 |
1.446 |
1.474 |
C6 |
C7 |
1.418 |
1.315 |
C6 |
H6 |
0.999 |
1.079 |
C7 |
C8 |
1.412 |
1.469 |
C7 |
H7 |
1.000 |
1.081 |
C8 |
C8A |
1.429 |
1.312 |
C8 |
H8 |
1.000 |
1.080 |
C8A |
C9 |
1.423 |
1.472 |
C8A |
C12 |
1.446 |
1.474 |
C9 |
C10 |
1.405 |
1.318 |
C9 |
H9 |
1.000 |
1.080 |
C10 |
C1A |
1.448 |
1.472 |
C10 |
H10 |
1.000 |
1.080 |
C1A |
C11 |
1.450 |
1.474 |
C11 |
C12 |
1.456 |
1.304 |
Bond Angles for AP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
HN1 |
117.8 |
120.0 |
C1 |
N1 |
HN2 |
108.1 |
120.0 |
N1 |
C1 |
C2 |
121.0 |
118.9 |
N1 |
C1 |
C1A |
118.2 |
119.0 |
HN1 |
N1 |
HN2 |
132.0 |
120.0 |
C2 |
C1 |
C1A |
120.8 |
122.0 |
C1 |
C2 |
C3 |
119.4 |
122.8 |
C1 |
C2 |
H2 |
112.7 |
118.6 |
C1 |
C1A |
C10 |
119.7 |
121.8 |
C1 |
C1A |
C11 |
120.6 |
119.1 |
C3 |
C2 |
H2 |
127.9 |
118.6 |
C2 |
C3 |
C3A |
118.8 |
119.4 |
C2 |
C3 |
H3 |
125.5 |
120.4 |
C3A |
C3 |
H3 |
115.7 |
120.3 |
C3 |
C3A |
C4 |
121.4 |
122.6 |
C3 |
C3A |
C11 |
119.8 |
117.6 |
C4 |
C3A |
C11 |
118.8 |
119.7 |
C3A |
C4 |
C5 |
120.5 |
120.0 |
C3A |
C4 |
H4 |
117.2 |
120.0 |
C3A |
C11 |
C1A |
120.6 |
119.1 |
C3A |
C11 |
C12 |
120.5 |
120.2 |
C5 |
C4 |
H4 |
122.2 |
120.0 |
C4 |
C5 |
C5A |
119.9 |
120.0 |
C4 |
C5 |
H5 |
122.3 |
120.0 |
C5A |
C5 |
H5 |
117.8 |
120.0 |
C5 |
C5A |
C6 |
122.5 |
122.6 |
C5 |
C5A |
C12 |
119.1 |
119.7 |
C6 |
C5A |
C12 |
118.4 |
117.7 |
C5A |
C6 |
C7 |
121.2 |
119.3 |
C5A |
C6 |
H6 |
123.6 |
120.4 |
C5A |
C12 |
C8A |
119.3 |
119.2 |
C5A |
C12 |
C11 |
121.1 |
120.3 |
C7 |
C6 |
H6 |
115.2 |
120.3 |
C6 |
C7 |
C8 |
120.1 |
122.8 |
C6 |
C7 |
H7 |
119.6 |
118.6 |
C8 |
C7 |
H7 |
120.3 |
118.6 |
C7 |
C8 |
C8A |
120.4 |
122.0 |
C7 |
C8 |
H8 |
118.6 |
119.0 |
C8A |
C8 |
H8 |
121.0 |
119.0 |
C8 |
C8A |
C9 |
118.9 |
121.8 |
C8 |
C8A |
C12 |
120.7 |
119.0 |
C9 |
C8A |
C12 |
120.4 |
119.2 |
C8A |
C9 |
C10 |
120.5 |
120.3 |
C8A |
C9 |
H9 |
122.1 |
119.9 |
C8A |
C12 |
C11 |
119.6 |
120.5 |
C10 |
C9 |
H9 |
117.4 |
119.9 |
C9 |
C10 |
C1A |
120.9 |
120.3 |
C9 |
C10 |
H10 |
115.7 |
119.8 |
C1A |
C10 |
H10 |
123.3 |
119.8 |
C10 |
C1A |
C11 |
119.7 |
119.1 |
C1A |
C11 |
C12 |
118.9 |
120.7 |
Torsion Angles for AP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HN1 |
N1 |
C1 |
HN2 |
165.3 |
179.7 |
C2 |
C1 |
N1 |
C1A |
179.3 |
180.2 |
N1 |
C1 |
C2 |
C3 |
181.1 |
180.0 |
N1 |
C1 |
C2 |
H2 |
0.9 |
-0.0 |
N1 |
C1 |
C1A |
C10 |
0.8 |
0.4 |
N1 |
C1 |
C1A |
C11 |
179.0 |
179.8 |
C1 |
N1 |
HN1 |
HN2 |
198.9 |
180.3 |
HN1 |
N1 |
C1 |
C2 |
220.1 |
179.7 |
HN1 |
N1 |
C1 |
C1A |
40.8 |
359.5 |
C1 |
N1 |
HN2 |
HN1 |
162.4 |
179.7 |
HN2 |
N1 |
C1 |
C2 |
54.8 |
-0.0 |
HN2 |
N1 |
C1 |
C1A |
235.5 |
179.8 |
C2 |
C1 |
N1 |
HN1 |
220.1 |
179.7 |
C2 |
C1 |
N1 |
HN2 |
54.8 |
-0.0 |
N1 |
C1 |
C2 |
C1A |
180.7 |
179.8 |
C2 |
C1 |
C1A |
C10 |
181.5 |
180.2 |
C2 |
C1 |
C1A |
C11 |
359.7 |
359.6 |
C3 |
C2 |
C1 |
H2 |
180.3 |
180.0 |
C1 |
C2 |
C3 |
C3A |
359.6 |
-0.0 |
C1 |
C2 |
C3 |
H3 |
180.6 |
179.9 |
C1A |
C1 |
N1 |
HN1 |
40.8 |
359.5 |
C1A |
C1 |
N1 |
HN2 |
235.5 |
179.8 |
N1 |
C1 |
C1A |
C2 |
179.3 |
180.2 |
C1A |
C1 |
C2 |
C3 |
0.4 |
0.2 |
C1A |
C1 |
C2 |
H2 |
180.1 |
180.2 |
C3A |
C11 |
C1A |
C1 |
0.2 |
0.4 |
C9 |
C10 |
C1A |
C1 |
180.5 |
179.8 |
C1 |
C1A |
C10 |
H10 |
357.3 |
359.6 |
C10 |
C1A |
C1 |
C11 |
181.8 |
180.6 |
C1 |
C1A |
C11 |
C12 |
180.5 |
180.2 |
C3 |
C2 |
C1 |
C1A |
0.4 |
0.2 |
C1 |
C2 |
C3 |
H2 |
179.7 |
180.0 |
C3A |
C3 |
C2 |
H3 |
179.0 |
180.1 |
C2 |
C3 |
C3A |
C4 |
180.7 |
180.0 |
C2 |
C3 |
C3A |
C11 |
0.3 |
360.0 |
H2 |
C2 |
C1 |
C1A |
180.1 |
180.2 |
C1 |
C2 |
H2 |
C3 |
180.3 |
180.0 |
H2 |
C2 |
C3 |
C3A |
179.9 |
180.0 |
H2 |
C2 |
C3 |
H3 |
0.9 |
359.9 |
C3A |
C3 |
C2 |
H2 |
179.9 |
180.0 |
C2 |
C3 |
C3A |
H3 |
180.9 |
179.9 |
C4 |
C3A |
C3 |
C11 |
180.5 |
180.0 |
C3 |
C3A |
C4 |
C5 |
181.2 |
180.0 |
C3 |
C3A |
C4 |
H4 |
359.9 |
360.0 |
C3 |
C3A |
C11 |
C1A |
359.8 |
359.8 |
C3 |
C3A |
C11 |
C12 |
179.5 |
180.0 |
H3 |
C3 |
C2 |
H2 |
0.9 |
359.9 |
C2 |
C3 |
H3 |
C3A |
179.1 |
180.1 |
H3 |
C3 |
C3A |
C4 |
359.9 |
0.1 |
H3 |
C3 |
C3A |
C11 |
179.4 |
180.1 |
C4 |
C3A |
C3 |
H3 |
359.9 |
0.1 |
C3 |
C3A |
C4 |
C11 |
179.5 |
180.0 |
C4 |
C3A |
C11 |
C1A |
179.4 |
179.8 |
C4 |
C3A |
C11 |
C12 |
359.0 |
-0.0 |
C5 |
C4 |
C3A |
H4 |
181.3 |
180.0 |
C3A |
C4 |
C5 |
C5A |
358.9 |
-0.0 |
C3A |
C4 |
C5 |
H5 |
180.3 |
180.0 |
C1 |
C1A |
C11 |
C3A |
0.2 |
0.4 |
C11 |
C3A |
C3 |
H3 |
179.4 |
180.1 |
C3 |
C3A |
C11 |
C4 |
180.5 |
180.0 |
C11 |
C3A |
C4 |
C5 |
1.7 |
360.0 |
C11 |
C3A |
C4 |
H4 |
180.3 |
180.0 |
C5A |
C12 |
C11 |
C3A |
359.8 |
-0.0 |
C8A |
C12 |
C11 |
C3A |
181.1 |
180.0 |
C10 |
C1A |
C11 |
C3A |
178.4 |
179.8 |
C1A |
C11 |
C3A |
C12 |
180.4 |
179.8 |
C5 |
C4 |
C3A |
C11 |
1.7 |
-0.0 |
C3A |
C4 |
C5 |
H4 |
178.6 |
180.0 |
C5A |
C5 |
C4 |
H5 |
178.6 |
180.0 |
C4 |
C5 |
C5A |
C6 |
179.9 |
180.0 |
C4 |
C5 |
C5A |
C12 |
359.9 |
-0.0 |
H4 |
C4 |
C3A |
C11 |
180.3 |
180.0 |
C3A |
C4 |
H4 |
C5 |
181.4 |
180.0 |
H4 |
C4 |
C5 |
C5A |
180.3 |
180.0 |
H4 |
C4 |
C5 |
H5 |
1.7 |
-0.0 |
C5A |
C5 |
C4 |
H4 |
180.3 |
180.0 |
C4 |
C5 |
C5A |
H5 |
181.3 |
180.0 |
C6 |
C5A |
C5 |
C12 |
179.9 |
180.0 |
C5 |
C5A |
C6 |
C7 |
179.9 |
180.0 |
C5 |
C5A |
C6 |
H6 |
0.7 |
-0.0 |
C5 |
C5A |
C12 |
C8A |
179.4 |
180.0 |
C5 |
C5A |
C12 |
C11 |
0.7 |
-0.0 |
H5 |
C5 |
C4 |
H4 |
1.7 |
360.0 |
C4 |
C5 |
H5 |
C5A |
178.6 |
180.0 |
H5 |
C5 |
C5A |
C6 |
358.5 |
-0.0 |
H5 |
C5 |
C5A |
C12 |
178.6 |
180.0 |
C6 |
C5A |
C5 |
H5 |
358.5 |
360.0 |
C5 |
C5A |
C6 |
C12 |
180.1 |
180.0 |
C6 |
C5A |
C12 |
C8A |
359.5 |
360.0 |
C6 |
C5A |
C12 |
C11 |
180.8 |
180.0 |
C7 |
C6 |
C5A |
H6 |
179.2 |
180.0 |
C5A |
C6 |
C7 |
C8 |
0.1 |
-0.0 |
C5A |
C6 |
C7 |
H7 |
180.3 |
180.0 |
C3A |
C11 |
C12 |
C5A |
359.8 |
-0.0 |
C12 |
C5A |
C5 |
H5 |
178.6 |
180.0 |
C5 |
C5A |
C12 |
C6 |
179.9 |
180.0 |
C12 |
C5A |
C6 |
C7 |
359.9 |
-0.0 |
C12 |
C5A |
C6 |
H6 |
180.6 |
180.0 |
C8 |
C8A |
C12 |
C5A |
1.3 |
360.0 |
C9 |
C8A |
C12 |
C5A |
180.1 |
180.0 |
C8A |
C12 |
C5A |
C11 |
178.7 |
180.0 |
C1A |
C11 |
C12 |
C5A |
179.4 |
180.2 |
C7 |
C6 |
C5A |
C12 |
359.9 |
-0.0 |
C5A |
C6 |
C7 |
H6 |
180.7 |
180.0 |
C8 |
C7 |
C6 |
H7 |
179.8 |
180.0 |
C6 |
C7 |
C8 |
C8A |
0.7 |
360.0 |
C6 |
C7 |
C8 |
H8 |
177.4 |
180.0 |
H6 |
C6 |
C5A |
C12 |
180.6 |
180.0 |
C5A |
C6 |
H6 |
C7 |
179.3 |
180.0 |
H6 |
C6 |
C7 |
C8 |
179.4 |
180.0 |
H6 |
C6 |
C7 |
H7 |
359.6 |
-0.0 |
C8 |
C7 |
C6 |
H6 |
179.4 |
180.0 |
C6 |
C7 |
C8 |
H7 |
180.2 |
180.0 |
C8A |
C8 |
C7 |
H8 |
183.3 |
180.0 |
C7 |
C8 |
C8A |
C9 |
179.8 |
180.0 |
C7 |
C8 |
C8A |
C12 |
358.6 |
-0.0 |
H7 |
C7 |
C6 |
H6 |
359.6 |
-0.0 |
C6 |
C7 |
H7 |
C8 |
179.8 |
180.0 |
H7 |
C7 |
C8 |
C8A |
180.5 |
180.0 |
H7 |
C7 |
C8 |
H8 |
357.2 |
360.0 |
C5A |
C12 |
C8A |
C8 |
1.3 |
360.0 |
C8A |
C8 |
C7 |
H7 |
180.5 |
180.0 |
C7 |
C8 |
C8A |
H8 |
176.6 |
180.0 |
C9 |
C8A |
C8 |
C12 |
181.2 |
180.0 |
C8 |
C8A |
C9 |
C10 |
181.1 |
180.1 |
C8 |
C8A |
C9 |
H9 |
0.4 |
-0.0 |
C8 |
C8A |
C12 |
C11 |
180.0 |
180.0 |
H8 |
C8 |
C7 |
H7 |
357.2 |
-0.0 |
C7 |
C8 |
H8 |
C8A |
183.3 |
180.0 |
H8 |
C8 |
C8A |
C9 |
3.2 |
-0.0 |
H8 |
C8 |
C8A |
C12 |
182.0 |
180.0 |
C5A |
C12 |
C8A |
C9 |
180.1 |
180.0 |
C9 |
C8A |
C8 |
H8 |
3.2 |
-0.0 |
C8 |
C8A |
C9 |
C12 |
178.8 |
180.0 |
C9 |
C8A |
C12 |
C11 |
358.8 |
-0.0 |
C10 |
C9 |
C8A |
H9 |
180.7 |
180.1 |
C8A |
C9 |
C10 |
C1A |
357.2 |
359.7 |
C8A |
C9 |
C10 |
H10 |
180.2 |
179.9 |
C3A |
C11 |
C12 |
C8A |
181.1 |
180.0 |
C5A |
C12 |
C8A |
C11 |
181.3 |
180.0 |
C12 |
C8A |
C8 |
H8 |
182.0 |
180.0 |
C8 |
C8A |
C12 |
C9 |
181.2 |
180.0 |
C12 |
C8A |
C9 |
C10 |
2.3 |
0.1 |
C12 |
C8A |
C9 |
H9 |
181.6 |
180.0 |
C1A |
C11 |
C12 |
C8A |
0.7 |
0.2 |
C1 |
C1A |
C10 |
C9 |
180.5 |
179.8 |
C10 |
C9 |
C8A |
C12 |
2.3 |
0.1 |
C8A |
C9 |
C10 |
H9 |
179.4 |
179.9 |
C1A |
C10 |
C9 |
H10 |
177.0 |
179.8 |
C9 |
C10 |
C1A |
C11 |
2.3 |
0.5 |
H9 |
C9 |
C8A |
C12 |
181.6 |
180.0 |
C8A |
C9 |
H9 |
C10 |
180.6 |
180.1 |
H9 |
C9 |
C10 |
C1A |
177.8 |
179.8 |
H9 |
C9 |
C10 |
H10 |
0.8 |
360.0 |
C1 |
C1A |
C10 |
C11 |
178.2 |
179.4 |
C3A |
C11 |
C1A |
C10 |
178.4 |
179.8 |
C1A |
C10 |
C9 |
H9 |
177.8 |
179.8 |
C9 |
C10 |
C1A |
H10 |
183.2 |
180.2 |
C10 |
C1A |
C11 |
C12 |
358.7 |
359.6 |
H10 |
C10 |
C9 |
H9 |
0.8 |
360.0 |
C9 |
C10 |
H10 |
C1A |
176.9 |
179.8 |
H10 |
C10 |
C1A |
C11 |
179.1 |
180.2 |
C1 |
C1A |
C11 |
C10 |
181.8 |
180.6 |
C3A |
C11 |
C1A |
C12 |
179.6 |
180.2 |
C5A |
C12 |
C11 |
C1A |
179.4 |
180.2 |
C8A |
C12 |
C11 |
C1A |
0.7 |
0.2 |
C11 |
C1A |
C10 |
H10 |
179.1 |
180.2 |
C3A |
C11 |
C12 |
C1A |
180.4 |
179.8 |
C5A |
C12 |
C11 |
C8A |
178.7 |
180.0 |