PDB Chemical Component AP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1 1.488 1.355
N1 HN1 1.000 0.970
N1 HN2 1.020 0.970
C1 C2 1.443 1.468
C1 C1A 1.440 1.312
C2 C3 1.510 1.316
C2 H2 1.000 1.080
C3 C3A 1.466 1.473
C3 H3 1.000 1.080
C3A C4 1.451 1.312
C3A C11 1.455 1.475
C4 C5 1.480 1.478
C4 H4 1.000 1.079
C5 C5A 1.451 1.312
C5 H5 0.999 1.080
C5A C6 1.460 1.473
C5A C12 1.446 1.474
C6 C7 1.418 1.315
C6 H6 0.999 1.079
C7 C8 1.412 1.469
C7 H7 1.000 1.081
C8 C8A 1.429 1.312
C8 H8 1.000 1.080
C8A C9 1.423 1.472
C8A C12 1.446 1.474
C9 C10 1.405 1.318
C9 H9 1.000 1.080
C10 C1A 1.448 1.472
C10 H10 1.000 1.080
C1A C11 1.450 1.474
C11 C12 1.456 1.304

Bond Angles for AP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 N1 HN1 117.8 120.0
C1 N1 HN2 108.1 120.0
N1 C1 C2 121.0 118.9
N1 C1 C1A 118.2 119.0
HN1 N1 HN2 132.0 120.0
C2 C1 C1A 120.8 122.0
C1 C2 C3 119.4 122.8
C1 C2 H2 112.7 118.6
C1 C1A C10 119.7 121.8
C1 C1A C11 120.6 119.1
C3 C2 H2 127.9 118.6
C2 C3 C3A 118.8 119.4
C2 C3 H3 125.5 120.4
C3A C3 H3 115.7 120.3
C3 C3A C4 121.4 122.6
C3 C3A C11 119.8 117.6
C4 C3A C11 118.8 119.7
C3A C4 C5 120.5 120.0
C3A C4 H4 117.2 120.0
C3A C11 C1A 120.6 119.1
C3A C11 C12 120.5 120.2
C5 C4 H4 122.2 120.0
C4 C5 C5A 119.9 120.0
C4 C5 H5 122.3 120.0
C5A C5 H5 117.8 120.0
C5 C5A C6 122.5 122.6
C5 C5A C12 119.1 119.7
C6 C5A C12 118.4 117.7
C5A C6 C7 121.2 119.3
C5A C6 H6 123.6 120.4
C5A C12 C8A 119.3 119.2
C5A C12 C11 121.1 120.3
C7 C6 H6 115.2 120.3
C6 C7 C8 120.1 122.8
C6 C7 H7 119.6 118.6
C8 C7 H7 120.3 118.6
C7 C8 C8A 120.4 122.0
C7 C8 H8 118.6 119.0
C8A C8 H8 121.0 119.0
C8 C8A C9 118.9 121.8
C8 C8A C12 120.7 119.0
C9 C8A C12 120.4 119.2
C8A C9 C10 120.5 120.3
C8A C9 H9 122.1 119.9
C8A C12 C11 119.6 120.5
C10 C9 H9 117.4 119.9
C9 C10 C1A 120.9 120.3
C9 C10 H10 115.7 119.8
C1A C10 H10 123.3 119.8
C10 C1A C11 119.7 119.1
C1A C11 C12 118.9 120.7

Torsion Angles for AP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N1 C1 HN2 165.3 179.7
C2 C1 N1 C1A 179.3 180.2
N1 C1 C2 C3 181.1 180.0
N1 C1 C2 H2 0.9 -0.0
N1 C1 C1A C10 0.8 0.4
N1 C1 C1A C11 179.0 179.8
C1 N1 HN1 HN2 198.9 180.3
HN1 N1 C1 C2 220.1 179.7
HN1 N1 C1 C1A 40.8 359.5
C1 N1 HN2 HN1 162.4 179.7
HN2 N1 C1 C2 54.8 -0.0
HN2 N1 C1 C1A 235.5 179.8
C2 C1 N1 HN1 220.1 179.7
C2 C1 N1 HN2 54.8 -0.0
N1 C1 C2 C1A 180.7 179.8
C2 C1 C1A C10 181.5 180.2
C2 C1 C1A C11 359.7 359.6
C3 C2 C1 H2 180.3 180.0
C1 C2 C3 C3A 359.6 -0.0
C1 C2 C3 H3 180.6 179.9
C1A C1 N1 HN1 40.8 359.5
C1A C1 N1 HN2 235.5 179.8
N1 C1 C1A C2 179.3 180.2
C1A C1 C2 C3 0.4 0.2
C1A C1 C2 H2 180.1 180.2
C3A C11 C1A C1 0.2 0.4
C9 C10 C1A C1 180.5 179.8
C1 C1A C10 H10 357.3 359.6
C10 C1A C1 C11 181.8 180.6
C1 C1A C11 C12 180.5 180.2
C3 C2 C1 C1A 0.4 0.2
C1 C2 C3 H2 179.7 180.0
C3A C3 C2 H3 179.0 180.1
C2 C3 C3A C4 180.7 180.0
C2 C3 C3A C11 0.3 360.0
H2 C2 C1 C1A 180.1 180.2
C1 C2 H2 C3 180.3 180.0
H2 C2 C3 C3A 179.9 180.0
H2 C2 C3 H3 0.9 359.9
C3A C3 C2 H2 179.9 180.0
C2 C3 C3A H3 180.9 179.9
C4 C3A C3 C11 180.5 180.0
C3 C3A C4 C5 181.2 180.0
C3 C3A C4 H4 359.9 360.0
C3 C3A C11 C1A 359.8 359.8
C3 C3A C11 C12 179.5 180.0
H3 C3 C2 H2 0.9 359.9
C2 C3 H3 C3A 179.1 180.1
H3 C3 C3A C4 359.9 0.1
H3 C3 C3A C11 179.4 180.1
C4 C3A C3 H3 359.9 0.1
C3 C3A C4 C11 179.5 180.0
C4 C3A C11 C1A 179.4 179.8
C4 C3A C11 C12 359.0 -0.0
C5 C4 C3A H4 181.3 180.0
C3A C4 C5 C5A 358.9 -0.0
C3A C4 C5 H5 180.3 180.0
C1 C1A C11 C3A 0.2 0.4
C11 C3A C3 H3 179.4 180.1
C3 C3A C11 C4 180.5 180.0
C11 C3A C4 C5 1.7 360.0
C11 C3A C4 H4 180.3 180.0
C5A C12 C11 C3A 359.8 -0.0
C8A C12 C11 C3A 181.1 180.0
C10 C1A C11 C3A 178.4 179.8
C1A C11 C3A C12 180.4 179.8
C5 C4 C3A C11 1.7 -0.0
C3A C4 C5 H4 178.6 180.0
C5A C5 C4 H5 178.6 180.0
C4 C5 C5A C6 179.9 180.0
C4 C5 C5A C12 359.9 -0.0
H4 C4 C3A C11 180.3 180.0
C3A C4 H4 C5 181.4 180.0
H4 C4 C5 C5A 180.3 180.0
H4 C4 C5 H5 1.7 -0.0
C5A C5 C4 H4 180.3 180.0
C4 C5 C5A H5 181.3 180.0
C6 C5A C5 C12 179.9 180.0
C5 C5A C6 C7 179.9 180.0
C5 C5A C6 H6 0.7 -0.0
C5 C5A C12 C8A 179.4 180.0
C5 C5A C12 C11 0.7 -0.0
H5 C5 C4 H4 1.7 360.0
C4 C5 H5 C5A 178.6 180.0
H5 C5 C5A C6 358.5 -0.0
H5 C5 C5A C12 178.6 180.0
C6 C5A C5 H5 358.5 360.0
C5 C5A C6 C12 180.1 180.0
C6 C5A C12 C8A 359.5 360.0
C6 C5A C12 C11 180.8 180.0
C7 C6 C5A H6 179.2 180.0
C5A C6 C7 C8 0.1 -0.0
C5A C6 C7 H7 180.3 180.0
C3A C11 C12 C5A 359.8 -0.0
C12 C5A C5 H5 178.6 180.0
C5 C5A C12 C6 179.9 180.0
C12 C5A C6 C7 359.9 -0.0
C12 C5A C6 H6 180.6 180.0
C8 C8A C12 C5A 1.3 360.0
C9 C8A C12 C5A 180.1 180.0
C8A C12 C5A C11 178.7 180.0
C1A C11 C12 C5A 179.4 180.2
C7 C6 C5A C12 359.9 -0.0
C5A C6 C7 H6 180.7 180.0
C8 C7 C6 H7 179.8 180.0
C6 C7 C8 C8A 0.7 360.0
C6 C7 C8 H8 177.4 180.0
H6 C6 C5A C12 180.6 180.0
C5A C6 H6 C7 179.3 180.0
H6 C6 C7 C8 179.4 180.0
H6 C6 C7 H7 359.6 -0.0
C8 C7 C6 H6 179.4 180.0
C6 C7 C8 H7 180.2 180.0
C8A C8 C7 H8 183.3 180.0
C7 C8 C8A C9 179.8 180.0
C7 C8 C8A C12 358.6 -0.0
H7 C7 C6 H6 359.6 -0.0
C6 C7 H7 C8 179.8 180.0
H7 C7 C8 C8A 180.5 180.0
H7 C7 C8 H8 357.2 360.0
C5A C12 C8A C8 1.3 360.0
C8A C8 C7 H7 180.5 180.0
C7 C8 C8A H8 176.6 180.0
C9 C8A C8 C12 181.2 180.0
C8 C8A C9 C10 181.1 180.1
C8 C8A C9 H9 0.4 -0.0
C8 C8A C12 C11 180.0 180.0
H8 C8 C7 H7 357.2 -0.0
C7 C8 H8 C8A 183.3 180.0
H8 C8 C8A C9 3.2 -0.0
H8 C8 C8A C12 182.0 180.0
C5A C12 C8A C9 180.1 180.0
C9 C8A C8 H8 3.2 -0.0
C8 C8A C9 C12 178.8 180.0
C9 C8A C12 C11 358.8 -0.0
C10 C9 C8A H9 180.7 180.1
C8A C9 C10 C1A 357.2 359.7
C8A C9 C10 H10 180.2 179.9
C3A C11 C12 C8A 181.1 180.0
C5A C12 C8A C11 181.3 180.0
C12 C8A C8 H8 182.0 180.0
C8 C8A C12 C9 181.2 180.0
C12 C8A C9 C10 2.3 0.1
C12 C8A C9 H9 181.6 180.0
C1A C11 C12 C8A 0.7 0.2
C1 C1A C10 C9 180.5 179.8
C10 C9 C8A C12 2.3 0.1
C8A C9 C10 H9 179.4 179.9
C1A C10 C9 H10 177.0 179.8
C9 C10 C1A C11 2.3 0.5
H9 C9 C8A C12 181.6 180.0
C8A C9 H9 C10 180.6 180.1
H9 C9 C10 C1A 177.8 179.8
H9 C9 C10 H10 0.8 360.0
C1 C1A C10 C11 178.2 179.4
C3A C11 C1A C10 178.4 179.8
C1A C10 C9 H9 177.8 179.8
C9 C10 C1A H10 183.2 180.2
C10 C1A C11 C12 358.7 359.6
H10 C10 C9 H9 0.8 360.0
C9 C10 H10 C1A 176.9 179.8
H10 C10 C1A C11 179.1 180.2
C1 C1A C11 C10 181.8 180.6
C3A C11 C1A C12 179.6 180.2
C5A C12 C11 C1A 179.4 180.2
C8A C12 C11 C1A 0.7 0.2
C11 C1A C10 H10 179.1 180.2
C3A C11 C12 C1A 180.4 179.8
C5A C12 C11 C8A 178.7 180.0