PDB Chemical Component AOV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AOV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.502 1.479
PB O2B 1.520 1.610
PB O3B 1.547 1.610
PB O3A 1.608 1.610
O3B VG 2.038 1.840
PA O1A 1.478 1.480
PA O2A 1.538 1.610
PA O3A 1.580 1.609
PA O5' 1.602 1.610
O5' C5' 1.460 1.429
C5' C4' 1.529 1.530
C4' O4' 1.457 1.438
C4' C3' 1.527 1.541
O4' C1' 1.422 1.443
C3' O3' 1.405 1.429
C3' C2' 1.503 1.548
C2' O2' 1.408 1.429
C2' C1' 1.502 1.550
C1' N9 1.480 1.465
N9 C8 1.342 1.363
N9 C4 1.321 1.372
C8 N7 1.353 1.302
N7 C5 1.345 1.354
C5 C6 1.491 1.407
C5 C4 1.462 1.405
C6 N6 1.357 1.384
C6 N1 1.339 1.329
N1 C2 1.352 1.321
C2 N3 1.346 1.316
N3 C4 1.347 1.329
VG O1G 1.786 1.584
VG O2G 1.790 1.839
VG O3G 1.755 1.839
VG O4G 1.853 1.841
O2B H2B 0.950 0.967
O2A H2A 0.950 0.966
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
C1' H1' 1.100 1.090
O3' HA 0.950 0.966
C2' H2' 1.100 1.089
O2' HB 0.950 0.967
C8 H8 1.080 1.080
N6 H61N 1.000 0.970
N6 H62N 1.001 0.970
C2 H2 1.080 1.080
O2G H2G1 0.950 0.967
O3G H3G1 0.950 0.967
O4G H4G1 0.951 0.967

Bond Angles for AOV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 110.9 109.5
O1B PB O3B 107.1 109.5
O1B PB O3A 109.1 109.4
O2B PB O3B 107.0 109.5
O2B PB O3A 112.3 109.4
PB O2B H2B 109.5 114.0
O3B PB O3A 110.2 109.5
PB O3B VG 135.7 114.0
PB O3A PA 126.5 134.0
O3B VG O1G 91.4 90.0
O3B VG O2G 87.3 90.0
O3B VG O3G 98.6 90.0
O3B VG O4G 169.5 180.0
O1A PA O2A 126.7 109.5
O1A PA O3A 99.2 109.5
O1A PA O5' 114.6 109.5
O2A PA O3A 111.1 109.4
O2A PA O5' 108.8 109.5
PA O2A H2A 109.5 114.0
O3A PA O5' 89.2 109.5
PA O5' C5' 125.6 123.0
O5' C5' C4' 112.4 109.5
O5' C5' H5'1 108.5 109.5
O5' C5' H5'2 107.9 109.5
C5' C4' O4' 105.2 109.9
C5' C4' C3' 113.5 109.9
C4' C5' H5'1 108.5 109.4
C4' C5' H5'2 107.8 109.4
C5' C4' H4' 109.2 109.9
O4' C4' C3' 108.3 107.2
C4' O4' C1' 106.1 107.0
O4' C4' H4' 114.5 109.9
C4' C3' O3' 103.8 110.5
C4' C3' C2' 94.6 104.2
C3' C4' H4' 106.3 110.0
C4' C3' H3' 122.8 110.5
O4' C1' C2' 105.3 103.5
O4' C1' N9 113.6 110.6
O4' C1' H1' 109.7 110.7
O3' C3' C2' 113.1 110.5
O3' C3' H3' 107.1 110.4
C3' O3' HA 109.5 114.1
C3' C2' O2' 112.0 110.9
C3' C2' C1' 105.6 102.1
C2' C3' H3' 114.8 110.6
C3' C2' H2' 111.2 110.9
O2' C2' C1' 111.7 110.9
O2' C2' H2' 105.0 110.8
C2' O2' HB 109.5 113.9
C2' C1' N9 109.8 110.6
C2' C1' H1' 113.5 110.6
C1' C2' H2' 111.5 111.0
C1' N9 C8 123.0 126.3
C1' N9 C4 123.0 126.3
N9 C1' H1' 105.2 110.7
C8 N9 C4 113.9 107.5
N9 C8 N7 109.7 110.0
N9 C8 H8 125.1 125.0
N9 C4 C5 99.9 106.0
N9 C4 N3 141.9 135.0
C8 N7 C5 104.1 109.4
N7 C8 H8 125.2 125.0
N7 C5 C6 131.5 134.6
N7 C5 C4 112.4 107.2
C6 C5 C4 116.0 118.2
C5 C6 N6 119.7 120.8
C5 C6 N1 120.1 118.4
C5 C4 N3 118.2 119.1
N6 C6 N1 120.2 120.8
C6 N6 H61N 109.5 120.0
C6 N6 H62N 109.5 120.0
C6 N1 C2 120.1 121.2
N1 C2 N3 123.1 122.5
N1 C2 H2 118.5 118.7
C2 N3 C4 122.6 120.7
N3 C2 H2 118.5 118.8
O1G VG O2G 103.5 120.0
O1G VG O3G 140.7 120.0
O1G VG O4G 90.0 90.0
O2G VG O3G 114.8 120.0
O2G VG O4G 82.3 90.0
VG O2G H2G1 109.5 114.0
O3G VG O4G 86.8 90.0
VG O3G H3G1 109.5 114.0
VG O4G H4G1 109.5 114.0
H5'1 C5' H5'2 111.8 109.5
H61N N6 H62N 109.4 120.1

Torsion Angles for AOV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 116.5 120.0
O2B PB O1B O3A 235.7 240.0
O1B PB O2B H2B 277.7 179.7
O3B PB O1B O3A 119.2 120.0
O1B PB O3B VG 26.5 64.1
O1B PB O3A PA 358.5 320.0
O1B PB O2B O3B 243.5 240.0
O1B PB O2B O3A 122.4 120.0
O3B PB O2B O3A 238.9 240.0
O2B PB O3B VG 267.4 304.0
O2B PB O3A PA 122.0 80.0
O1B PB O3B O2B 119.0 120.0
O1B PB O3B O3A 241.4 240.0
O2B PB O3B O3A 122.4 120.0
O3B PB O2B H2B 34.2 299.8
O3B PB O3A PA 241.2 200.0
PB O3B VG O1G 309.3 303.3
PB O3B VG O2G 205.9 183.3
PB O3B VG O3G 91.2 63.3
PB O3B VG O4G 211.6 251.3
O1B PB O3A O2B 236.6 240.0
O1B PB O3A O3B 117.3 120.0
O2B PB O3A O3B 240.7 240.0
O3A PB O2B H2B 155.3 59.8
O3A PB O3B VG 145.0 184.1
O1A PA O3A PB 299.7 320.0
O2A PA O3A PB 75.0 80.0
PB O3A PA O5' 184.9 200.0
VG O3B PB O3A 145.0 184.1
O1G VG O3B O2G 103.4 120.0
O1G VG O3B O3G 218.2 240.0
O1G VG O3B O4G 97.8 51.9
O2G VG O3B O3G 114.7 120.0
O2G VG O3B O4G 354.3 292.0
O3B VG O2G H2G1 17.7 180.0
O3G VG O3B O4G 239.6 171.9
O3B VG O3G H3G1 43.5 42.1
O3B VG O4G H4G1 17.0 351.9
PB O3A PA O1A 299.7 320.0
O2A PA O1A O3A 234.8 240.0
O2A PA O1A O5' 141.5 120.0
O1A PA O2A H2A 256.3 180.0
O3A PA O1A O5' 266.6 240.0
O1A PA O5' C5' 175.8 55.0
PB O3A PA O2A 75.0 80.0
O1A PA O2A O3A 120.1 120.0
O1A PA O2A O5' 216.7 240.0
O3A PA O2A O5' 96.6 120.0
O2A PA O5' C5' 27.6 295.0
O1A PA O3A O2A 224.7 240.0
O1A PA O3A O5' 114.8 120.0
O2A PA O3A O5' 250.2 240.0
O3A PA O2A H2A 136.1 60.0
O3A PA O5' C5' 275.6 175.1
O1A PA O5' O2A 148.2 120.0
O1A PA O5' O3A 260.2 240.0
O2A PA O5' O3A 112.0 120.0
O5' PA O2A H2A 39.5 300.0
PA O5' C5' C4' 232.2 180.0
PA O5' C5' H5'1 352.2 299.9
PA O5' C5' H5'2 113.5 60.0
O5' C5' C4' O4' 285.3 66.4
O5' C5' C4' C3' 43.6 184.2
C4' C5' O5' H5'1 240.0 240.0
C4' C5' O5' H5'2 118.8 120.0
O5' C5' C4' H4' 162.0 305.5
H5'1 C5' O5' H5'2 238.8 239.9
O5' C5' C4' H5'1 120.0 120.0
O5' C5' C4' H5'2 241.2 240.0
O4' C4' C5' C3' 241.8 242.2
C5' C4' O4' C1' 143.9 146.0
O4' C4' C5' H4' 123.3 121.0
C5' C4' C3' O3' 88.6 119.9
C5' C4' C3' C2' 203.8 238.6
C3' C4' C5' H4' 241.6 238.8
C5' C4' C3' H3' 327.4 357.4
H5'1 C5' C4' H5'2 121.2 120.0
C5' C4' O4' C3' 121.7 119.4
O4' C4' C5' H5'1 165.3 306.5
O4' C4' C5' H5'2 44.1 186.5
C5' C4' O4' H4' 240.0 239.0
O4' C4' C3' O3' 205.1 239.3
O4' C4' C3' C2' 320.2 358.0
C3' C4' O4' H4' 118.3 119.6
O4' C4' C3' H3' 83.9 116.8
C4' O4' C1' C2' 6.4 319.9
C4' O4' C1' N9 246.2 201.5
C4' O4' C1' H1' 128.9 78.4
C5' C4' C3' O4' 243.5 240.6
C3' C4' C5' H5'1 283.6 64.3
C3' C4' C5' H5'2 162.3 304.3
C5' C4' C3' H4' 120.1 121.1
C3' C4' O4' C1' 22.2 26.5
O4' C4' C3' H4' 236.6 240.6
O3' C3' C4' C2' 244.9 241.3
O3' C3' C4' H3' 121.3 122.5
C4' C3' O3' HA 111.1 180.1
C4' C3' C2' O2' 280.9 220.9
C4' C3' C2' C1' 42.7 339.1
C2' C3' C4' H3' 236.4 241.2
C4' C3' C2' H2' 163.8 97.3
C1' O4' C4' C3' 22.2 26.5
C1' O4' C4' H4' 263.9 267.0
C3' C2' C1' O4' 326.9 37.1
O2' C2' C1' O4' 88.9 155.2
C2' C1' O4' N9 120.1 118.4
C2' C1' O4' H1' 237.5 241.5
O4' C1' C2' H2' 206.0 278.8
O4' C1' N9 C8 5.3 23.5
O4' C1' N9 C4 187.9 203.3
N9 C1' O4' H1' 117.4 123.1
C4' C3' O3' C2' 101.2 114.8
O3' C3' C4' H4' 328.5 358.7
C4' C3' O3' H3' 228.7 237.5
O3' C3' C2' O2' 28.0 339.7
O3' C3' C2' C1' 149.9 97.8
C2' C3' O3' H3' 127.5 122.7
O3' C3' C2' H2' 271.0 216.1
C4' C3' C2' O3' 252.8 241.3
C2' C3' C4' H4' 83.6 117.5
C4' C3' C2' H3' 129.6 118.7
O4' C1' C2' C3' 326.9 37.1
O3' C3' C2' H3' 236.7 237.5
C2' C3' O3' HA 9.9 65.2
O2' C2' C3' C1' 238.1 241.9
O2' C2' C3' H2' 117.1 123.6
C3' C2' O2' HB 200.6 298.5
C3' C2' C1' N9 89.5 155.5
C3' C2' C1' H1' 206.8 278.5
C1' C2' C3' H2' 238.9 241.7
O4' C1' C2' O2' 88.9 155.2
C3' C2' O2' C1' 118.3 112.6
O2' C2' C3' H3' 151.3 102.2
C3' C2' O2' H2' 239.3 236.3
O2' C2' C1' N9 211.5 273.7
O2' C2' C1' H1' 328.9 36.7
C1' C2' O2' H2' 121.0 123.7
O4' C1' C2' N9 237.4 241.5
O4' C1' C2' H1' 120.0 118.5
C3' C2' C1' O2' 238.0 241.9
C1' C2' C3' H3' 273.2 220.4
C3' C2' C1' H2' 120.9 118.2
O2' C2' C1' H2' 242.9 236.4
C1' C2' O2' HB 82.3 185.9
C2' C1' N9 C8 247.7 269.5
C2' C1' N9 C4 70.4 89.3
N9 C1' C2' H1' 242.6 237.0
O4' C1' N9 C2' 117.5 114.0
O4' C1' N9 H1' 240.0 237.0
C2' C1' N9 H1' 122.5 122.9
N9 C1' C2' H2' 328.6 37.3
C8 N9 C1' C4 177.4 180.2
C1' N9 C8 N7 181.9 180.0
C1' N9 C8 H8 2.0 0.1
C1' N9 C4 C5 177.3 179.8
C1' N9 C4 N3 358.7 0.7
C1' N9 C8 C4 182.4 179.8
C8 N9 C1' H1' 125.3 146.5
C8 N9 C4 C5 359.7 359.6
C8 N9 C4 N3 181.2 180.5
N9 C8 N7 C5 1.1 0.1
N7 C8 N9 H8 180.0 180.0
C1' N9 C4 C8 177.6 180.2
C4 N9 C1' H1' 307.9 326.3
C4 N9 C8 N7 359.5 0.2
C4 N9 C8 H8 179.5 180.2
N7 C5 C4 N9 1.1 0.4
C6 C5 C4 N9 181.3 180.1
C5 C4 N9 N3 178.5 179.1
C2 N3 C4 N9 179.1 179.6
N7 C8 N9 C4 359.5 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 178.3 180.0
C8 N7 C5 C4 358.7 359.7
N9 C4 C5 N7 1.1 0.4
C5 N7 C8 H8 181.1 180.0
C6 C5 N7 C4 179.7 180.3
N7 C5 C6 N6 359.5 360.0
N7 C5 C6 N1 179.0 179.9
N7 C5 C4 N3 180.0 179.7
N9 C4 C5 C6 181.3 180.1
N7 C5 C6 C4 180.3 179.7
C6 C5 C4 N3 0.3 359.4
N6 C6 C5 N1 180.5 180.0
C5 C6 N6 H61N 14.0 359.9
C5 C6 N6 H62N 134.0 180.0
C5 C6 N1 C2 1.3 360.0
N9 C4 C5 N3 181.0 180.7
N7 C5 C4 C6 179.7 180.3
C4 C5 C6 N6 179.2 180.3
C4 C5 C6 N1 358.7 0.3
C2 N3 C4 C5 0.8 0.6
N6 C6 C5 C4 179.2 180.3
C5 C6 N6 N1 179.5 180.0
N6 C6 N1 C2 180.8 180.0
H61N N6 C6 H62N 240.0 179.9
N1 C6 C5 C4 358.7 0.3
C5 C6 N1 N6 180.5 180.0
N1 C6 N6 H61N 194.5 180.0
N1 C6 N6 H62N 314.5 0.0
C6 N1 C2 N3 359.8 360.0
C6 N1 C2 H2 179.8 180.1
N1 C2 N3 C4 359.1 359.7
N3 C2 N1 H2 180.0 179.9
N9 C4 N3 C2 179.1 179.6
C5 C4 N3 C2 0.8 0.6
N1 C2 N3 H2 180.0 180.1
N9 C4 N3 C5 178.3 179.0
C4 N3 C2 H2 179.1 179.6
O3B VG O1G O2G 272.4 270.0
O3B VG O1G O3G 105.4 90.0
O3B VG O1G O4G 190.4 180.0
O2G VG O1G O3G 193.0 180.0
O2G VG O1G O4G 277.9 270.0
O1G VG O2G H2G1 286.9 90.0
O3G VG O1G O4G 85.0 90.0
O1G VG O3G H3G1 146.4 132.1
O1G VG O4G H4G1 279.1 300.0
O3B VG O2G O1G 90.8 90.0
O3B VG O2G O3G 261.8 270.0
O3B VG O2G O4G 179.0 180.0
O1G VG O2G O3G 171.0 180.0
O1G VG O2G O4G 88.2 90.0
O3G VG O2G O4G 277.2 270.0
O2G VG O3G H3G1 312.5 312.1
O2G VG O4G H4G1 22.7 60.0
O3B VG O3G O1G 257.1 270.0
O3B VG O3G O2G 91.0 90.0
O3B VG O3G O4G 171.0 180.0
O1G VG O3G O2G 193.9 180.0
O1G VG O3G O4G 273.9 270.0
O2G VG O3G O4G 80.0 90.0
O3G VG O2G H2G1 115.9 270.0
O3G VG O4G H4G1 138.3 180.0
O3B VG O4G O1G 97.9 51.9
O3B VG O4G O2G 354.3 292.0
O3B VG O4G O3G 238.7 171.9
O1G VG O4G O2G 256.4 240.0
O1G VG O4G O3G 140.8 120.0
O2G VG O4G O3G 244.4 240.0
O4G VG O2G H2G1 198.8 0.0
O4G VG O3G H3G1 232.6 222.1
H2B O2B PB O3B 34.2 299.8
H2B O2B PB O3A 155.3 59.8
H2A O2A PA O3A 136.1 60.0
H2A O2A PA O5' 39.5 300.0
O5' C5' H5'1 C4' 237.6 240.0
O5' C5' H5'1 H5'2 118.8 120.1
H5'1 C5' C4' O4' 165.3 306.5
H5'1 C5' C4' C3' 283.6 64.3
C4' C5' H5'1 H5'2 241.2 240.0
H5'1 C5' C4' H4' 42.0 185.5
O5' C5' H5'2 C4' 121.6 120.0
O5' C5' H5'2 H5'1 240.8 240.0
H5'2 C5' C4' O4' 44.1 186.5
H5'2 C5' C4' C3' 162.3 304.3
C4' C5' H5'2 H5'1 119.2 120.0
H5'2 C5' C4' H4' 280.7 65.5
C5' C4' H4' O4' 117.7 121.0
C5' C4' H4' C3' 237.1 238.8
H4' C4' C5' H5'1 42.0 185.5
H4' C4' C5' H5'2 280.7 65.5
O4' C4' H4' C3' 119.4 117.8
H4' C4' O4' C1' 263.9 267.0
H4' C4' C3' O3' 328.5 358.7
H4' C4' C3' C2' 83.6 117.5
H4' C4' C3' H3' 207.3 236.3
C4' C3' H3' O3' 119.7 122.5
C4' C3' H3' C2' 246.2 245.1
H3' C3' C4' H4' 207.3 236.3
O3' C3' H3' C2' 126.4 122.6
H3' C3' O3' HA 242.4 302.5
H3' C3' C2' O2' 151.3 102.2
H3' C3' C2' C1' 273.2 220.4
H3' C3' C2' H2' 34.3 338.6
O4' C1' H1' C2' 242.6 245.9
O4' C1' H1' N9 122.5 123.0
C2' C1' H1' N9 240.0 237.1
H1' C1' C2' H2' 86.0 160.3
H1' C1' N9 C8 125.3 146.5
H1' C1' N9 C4 307.9 326.3
HA O3' C3' C2' 9.9 65.2
HA O3' C3' H3' 242.4 302.5
C3' C2' H2' O2' 121.3 123.6
C3' C2' H2' C1' 242.4 247.3
H2' C2' C3' H3' 34.3 338.6
O2' C2' H2' C1' 121.1 123.7
H2' C2' O2' HB 321.4 62.2
H2' C2' C1' N9 328.6 37.3
H2' C2' C1' H1' 86.0 160.3
HB O2' C2' C1' 82.3 185.9
HB O2' C2' H2' 321.4 62.2
H8 C8 N9 C4 179.5 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 181.1 180.0
H61N N6 C6 N1 194.5 180.0
C6 N6 H61N H62N 120.0 180.1
H62N N6 C6 N1 314.5 0.0
C6 N6 H62N H61N 240.0 179.9
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 179.1 179.6
H2G1 O2G VG O3G 115.9 270.0
H2G1 O2G VG O4G 198.8 0.0
H3G1 O3G VG O4G 232.6 222.1