PDB Chemical Component AOC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AOC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N6 |
C6 |
1.303 |
1.383 |
| N7 |
C5 |
1.311 |
1.354 |
| N7 |
C8 |
1.316 |
1.302 |
| C6 |
C5 |
1.388 |
1.405 |
| C6 |
N1 |
1.313 |
1.330 |
| C5 |
C4 |
1.358 |
1.405 |
| C8 |
N9 |
1.308 |
1.363 |
| N1 |
C2 |
1.293 |
1.320 |
| O2' |
C2' |
1.386 |
1.429 |
| C2' |
C3' |
1.515 |
1.548 |
| C2' |
C1' |
1.531 |
1.554 |
| C4 |
N9 |
1.300 |
1.372 |
| C4 |
N3 |
1.305 |
1.329 |
| N9 |
C1' |
1.449 |
1.465 |
| C2 |
N3 |
1.290 |
1.317 |
| O3' |
C3' |
1.413 |
1.429 |
| C3' |
C4' |
1.505 |
1.541 |
| C1' |
O4' |
1.371 |
1.444 |
| O4' |
C4' |
1.349 |
1.437 |
| C4' |
C5' |
1.477 |
1.530 |
| C5' |
O5' |
1.398 |
1.429 |
| O5' |
CAH |
1.370 |
1.429 |
| CAH |
CAE |
1.433 |
1.471 |
| CAE |
CAA |
1.149 |
1.174 |
| CAA |
HAA |
1.060 |
1.050 |
| CAH |
HAH1 |
1.100 |
1.090 |
| CAH |
HAH2 |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.100 |
1.090 |
| C4' |
H4' |
1.099 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
H2' |
1.100 |
1.089 |
| O2' |
HO2' |
0.950 |
0.967 |
| C1' |
H1' |
1.100 |
1.090 |
| C8 |
H8 |
1.080 |
1.080 |
| C2 |
H2 |
1.081 |
1.080 |
| N6 |
H61 |
1.000 |
0.970 |
| N6 |
H62 |
1.000 |
0.970 |
Bond Angles for AOC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C5 |
C4 |
105.8 |
107.1 |
| N7 |
C8 |
H8 |
125.6 |
125.0 |
| C5 |
C4 |
N3 |
119.8 |
119.1 |
| N1 |
C2 |
H2 |
119.1 |
118.8 |
| O2' |
C2' |
C1' |
108.9 |
110.9 |
| O2' |
C2' |
H2' |
112.9 |
110.8 |
| C2' |
C3' |
H3' |
110.8 |
110.5 |
| C1' |
C2' |
H2' |
110.6 |
110.9 |
| C2' |
C1' |
H1' |
110.0 |
110.6 |
| N9 |
C1' |
H1' |
111.1 |
110.7 |
| O3' |
C3' |
H3' |
112.4 |
110.5 |
| C3' |
C4' |
H4' |
112.0 |
109.9 |
| O4' |
C4' |
H4' |
114.7 |
109.9 |
| C4' |
C5' |
H5' |
111.2 |
109.5 |
| C4' |
C5' |
H5'' |
111.2 |
109.5 |
| O5' |
CAH |
HAH1 |
110.2 |
109.4 |
| O5' |
CAH |
HAH2 |
110.2 |
109.5 |
| CAE |
CAA |
HAA |
180.0 |
180.0 |
| HAH1 |
CAH |
HAH2 |
109.5 |
109.5 |
| H5' |
C5' |
H5'' |
109.5 |
109.5 |
| H61 |
N6 |
H62 |
109.5 |
120.0 |
Torsion Angles for AOC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
N7 |
C8 |
H8 |
180.2 |
180.1 |
| N7 |
C5 |
C4 |
N3 |
180.1 |
180.0 |
| C6 |
N1 |
C2 |
H2 |
179.5 |
180.2 |
| C8 |
N9 |
C1' |
H1' |
177.2 |
142.1 |
| O2' |
C2' |
C3' |
H3' |
153.4 |
102.3 |
| C1' |
C2' |
O2' |
H2' |
123.3 |
123.6 |
| O2' |
C2' |
C1' |
H1' |
357.0 |
36.7 |
| O3' |
C3' |
C2' |
H3' |
232.4 |
237.4 |
| C2' |
C3' |
C4' |
H4' |
77.7 |
117.6 |
| O2' |
C2' |
C1' |
H2' |
235.4 |
236.4 |
| C1' |
C2' |
C3' |
H3' |
269.3 |
220.5 |
| N9 |
C1' |
C2' |
H1' |
235.7 |
237.0 |
| C4 |
N9 |
C1' |
H1' |
357.3 |
321.7 |
| N9 |
C1' |
C2' |
H2' |
357.4 |
37.3 |
| C2' |
C1' |
N9 |
H1' |
123.6 |
123.0 |
| C2' |
C3' |
O3' |
H3' |
126.7 |
122.7 |
| O3' |
C3' |
C4' |
H4' |
319.0 |
358.8 |
| O4' |
C4' |
C3' |
H4' |
235.9 |
240.5 |
| C3' |
C4' |
C5' |
H5' |
0.8 |
64.7 |
| C3' |
C4' |
C5' |
H5'' |
123.1 |
304.7 |
| C1' |
O4' |
C4' |
H4' |
288.5 |
266.9 |
| C3' |
C4' |
O4' |
H4' |
122.3 |
119.5 |
| O4' |
C4' |
C5' |
H5' |
250.7 |
306.8 |
| O4' |
C4' |
C5' |
H5'' |
13.1 |
186.7 |
| H5' |
C5' |
C4' |
H5'' |
237.7 |
120.0 |
| C5' |
O5' |
CAH |
HAH1 |
75.8 |
60.0 |
| C5' |
O5' |
CAH |
HAH2 |
196.8 |
300.0 |
| HAH1 |
CAH |
O5' |
HAH2 |
239.0 |
120.0 |
| CAH |
CAE |
CAA |
HAA |
262.4 |
253.3 |
| O5' |
CAH |
HAH1 |
HAH2 |
121.4 |
240.0 |
| O5' |
CAH |
HAH2 |
HAH1 |
238.6 |
120.0 |
| C4' |
C5' |
H5' |
H5'' |
123.3 |
240.0 |
| C4' |
C5' |
H5'' |
H5' |
236.7 |
120.0 |
| H4' |
C4' |
C5' |
H5' |
125.7 |
185.7 |
| H4' |
C4' |
C5' |
H5'' |
248.1 |
65.7 |
| H3' |
C3' |
C4' |
H4' |
193.6 |
236.2 |
| HO3' |
O3' |
C3' |
H3' |
53.3 |
302.5 |
| O2' |
C2' |
H2' |
C1' |
122.3 |
123.6 |
| H2' |
C2' |
C3' |
H3' |
27.6 |
338.7 |
| H2' |
C2' |
C1' |
H1' |
121.7 |
160.3 |
| HO2' |
O2' |
C2' |
C1' |
67.9 |
185.9 |
| HO2' |
O2' |
C2' |
H2' |
304.7 |
62.3 |
| H1' |
C1' |
C2' |
H2' |
121.7 |
160.3 |