PDB Chemical Component AO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
|
1.356 |
C1 |
C13 |
|
1.409 |
C1 |
H1 |
|
1.081 |
C2 |
C3 |
|
1.402 |
C2 |
H2 |
|
1.080 |
C3 |
C4 |
|
1.375 |
C3 |
N15 |
|
1.393 |
C4 |
C11 |
|
1.409 |
C4 |
H4 |
|
1.080 |
C5 |
C6 |
|
1.376 |
C5 |
C14 |
|
1.409 |
C5 |
H5 |
|
1.079 |
C6 |
C7 |
|
1.401 |
C6 |
N16 |
|
1.393 |
C7 |
C8 |
|
1.357 |
C7 |
H7 |
|
1.080 |
C8 |
C12 |
|
1.410 |
C8 |
H8 |
|
1.080 |
C9 |
C12 |
|
1.397 |
C9 |
C13 |
|
1.397 |
C9 |
H9 |
|
1.080 |
N10 |
C11 |
|
1.330 |
N10 |
C14 |
|
1.330 |
N10 |
H10 |
|
0.970 |
C11 |
C13 |
|
1.467 |
C12 |
C14 |
|
1.467 |
N15 |
CX7 |
|
1.464 |
N15 |
CX8 |
|
1.465 |
CX7 |
H151 |
|
1.090 |
CX7 |
H152 |
|
1.090 |
CX7 |
H153 |
|
1.090 |
CX8 |
H154 |
|
1.090 |
CX8 |
H155 |
|
1.090 |
CX8 |
H156 |
|
1.091 |
N16 |
CXH |
|
1.465 |
N16 |
CXI |
|
1.466 |
CXH |
H161 |
|
1.090 |
CXH |
H162 |
|
1.090 |
CXH |
H163 |
|
1.090 |
CXI |
H164 |
|
1.090 |
CXI |
H165 |
|
1.090 |
CXI |
H166 |
|
1.089 |
Bond Angles for AO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C13 |
|
119.8 |
C2 |
C1 |
H1 |
|
120.1 |
C1 |
C2 |
C3 |
|
121.4 |
C1 |
C2 |
H2 |
|
119.3 |
C13 |
C1 |
H1 |
|
120.1 |
C1 |
C13 |
C9 |
|
121.2 |
C1 |
C13 |
C11 |
|
119.2 |
C3 |
C2 |
H2 |
|
119.3 |
C2 |
C3 |
C4 |
|
121.5 |
C2 |
C3 |
N15 |
|
119.2 |
C4 |
C3 |
N15 |
|
119.3 |
C3 |
C4 |
C11 |
|
119.5 |
C3 |
C4 |
H4 |
|
120.2 |
C3 |
N15 |
CX7 |
|
120.0 |
C3 |
N15 |
CX8 |
|
120.0 |
C11 |
C4 |
H4 |
|
120.3 |
C4 |
C11 |
N10 |
|
120.7 |
C4 |
C11 |
C13 |
|
118.5 |
C6 |
C5 |
C14 |
|
119.5 |
C6 |
C5 |
H5 |
|
120.3 |
C5 |
C6 |
C7 |
|
121.5 |
C5 |
C6 |
N16 |
|
119.3 |
C14 |
C5 |
H5 |
|
120.3 |
C5 |
C14 |
N10 |
|
120.7 |
C5 |
C14 |
C12 |
|
118.5 |
C7 |
C6 |
N16 |
|
119.2 |
C6 |
C7 |
C8 |
|
121.5 |
C6 |
C7 |
H7 |
|
119.3 |
C6 |
N16 |
CXH |
|
120.0 |
C6 |
N16 |
CXI |
|
120.0 |
C8 |
C7 |
H7 |
|
119.3 |
C7 |
C8 |
C12 |
|
119.7 |
C7 |
C8 |
H8 |
|
120.1 |
C12 |
C8 |
H8 |
|
120.2 |
C8 |
C12 |
C9 |
|
121.2 |
C8 |
C12 |
C14 |
|
119.3 |
C12 |
C9 |
C13 |
|
117.9 |
C12 |
C9 |
H9 |
|
121.0 |
C9 |
C12 |
C14 |
|
119.6 |
C13 |
C9 |
H9 |
|
121.0 |
C9 |
C13 |
C11 |
|
119.6 |
C11 |
N10 |
C14 |
|
121.4 |
C11 |
N10 |
H10 |
|
119.3 |
N10 |
C11 |
C13 |
|
120.7 |
C14 |
N10 |
H10 |
|
119.3 |
N10 |
C14 |
C12 |
|
120.7 |
CX7 |
N15 |
CX8 |
|
120.0 |
N15 |
CX7 |
H151 |
|
109.5 |
N15 |
CX7 |
H152 |
|
109.5 |
N15 |
CX7 |
H153 |
|
109.5 |
N15 |
CX8 |
H154 |
|
109.4 |
N15 |
CX8 |
H155 |
|
109.5 |
N15 |
CX8 |
H156 |
|
109.5 |
H151 |
CX7 |
H152 |
|
109.4 |
H151 |
CX7 |
H153 |
|
109.5 |
H152 |
CX7 |
H153 |
|
109.5 |
H154 |
CX8 |
H155 |
|
109.5 |
H154 |
CX8 |
H156 |
|
109.5 |
H155 |
CX8 |
H156 |
|
109.4 |
CXH |
N16 |
CXI |
|
120.0 |
N16 |
CXH |
H161 |
|
109.5 |
N16 |
CXH |
H162 |
|
109.4 |
N16 |
CXH |
H163 |
|
109.5 |
N16 |
CXI |
H164 |
|
109.4 |
N16 |
CXI |
H165 |
|
109.5 |
N16 |
CXI |
H166 |
|
109.5 |
H161 |
CXH |
H162 |
|
109.5 |
H161 |
CXH |
H163 |
|
109.5 |
H162 |
CXH |
H163 |
|
109.5 |
H164 |
CXI |
H165 |
|
109.5 |
H164 |
CXI |
H166 |
|
109.5 |
H165 |
CXI |
H166 |
|
109.5 |
Torsion Angles for AO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
C1 |
C2 |
H1 |
|
180.0 |
C2 |
C1 |
C13 |
C9 |
|
180.0 |
C2 |
C1 |
C13 |
C11 |
|
0.1 |
C3 |
C2 |
C1 |
H2 |
|
180.0 |
C1 |
C2 |
C3 |
C4 |
|
0.3 |
C1 |
C2 |
C3 |
N15 |
|
180.0 |
C2 |
C1 |
C13 |
H1 |
|
180.0 |
C13 |
C1 |
C2 |
C3 |
|
360.0 |
C13 |
C1 |
C2 |
H2 |
|
179.9 |
C4 |
C11 |
C13 |
C1 |
|
359.7 |
C12 |
C9 |
C13 |
C1 |
|
180.0 |
C1 |
C13 |
C9 |
H9 |
|
0.1 |
C9 |
C13 |
C1 |
C11 |
|
179.9 |
N10 |
C11 |
C13 |
C1 |
|
180.0 |
C2 |
C1 |
H1 |
C13 |
|
180.0 |
H1 |
C1 |
C2 |
C3 |
|
180.0 |
H1 |
C1 |
C2 |
H2 |
|
360.0 |
H1 |
C1 |
C13 |
C9 |
|
359.9 |
H1 |
C1 |
C13 |
C11 |
|
180.0 |
C3 |
C2 |
C1 |
C13 |
|
360.0 |
C3 |
C2 |
C1 |
H1 |
|
180.0 |
C1 |
C2 |
C3 |
H2 |
|
180.0 |
C4 |
C3 |
C2 |
N15 |
|
180.3 |
C2 |
C3 |
C4 |
C11 |
|
359.4 |
C2 |
C3 |
C4 |
H4 |
|
179.7 |
C2 |
C3 |
N15 |
CX7 |
|
0.0 |
C2 |
C3 |
N15 |
CX8 |
|
180.0 |
H2 |
C2 |
C1 |
C13 |
|
179.9 |
H2 |
C2 |
C1 |
H1 |
|
360.0 |
C1 |
C2 |
H2 |
C3 |
|
180.0 |
H2 |
C2 |
C3 |
C4 |
|
180.3 |
H2 |
C2 |
C3 |
N15 |
|
0.0 |
C4 |
C3 |
C2 |
H2 |
|
180.3 |
C2 |
C3 |
C4 |
N15 |
|
179.7 |
C4 |
C3 |
N15 |
CX7 |
|
179.7 |
C4 |
C3 |
N15 |
CX8 |
|
359.7 |
C11 |
C4 |
C3 |
H4 |
|
179.7 |
C3 |
C4 |
C11 |
N10 |
|
180.3 |
C3 |
C4 |
C11 |
C13 |
|
0.6 |
N15 |
C3 |
C2 |
H2 |
|
0.0 |
C2 |
C3 |
N15 |
C4 |
|
180.3 |
N15 |
C3 |
C4 |
C11 |
|
179.7 |
N15 |
C3 |
C4 |
H4 |
|
0.0 |
CX7 |
N15 |
C3 |
CX8 |
|
180.0 |
C3 |
N15 |
CX7 |
H151 |
|
180.0 |
C3 |
N15 |
CX7 |
H152 |
|
300.0 |
C3 |
N15 |
CX7 |
H153 |
|
60.0 |
C3 |
N15 |
CX8 |
H154 |
|
180.0 |
C3 |
N15 |
CX8 |
H155 |
|
300.1 |
C3 |
N15 |
CX8 |
H156 |
|
60.0 |
C1 |
C13 |
C11 |
C4 |
|
359.7 |
C11 |
C4 |
C3 |
N15 |
|
179.7 |
C3 |
C4 |
C11 |
H4 |
|
180.3 |
C9 |
C13 |
C11 |
C4 |
|
179.8 |
C4 |
C11 |
N10 |
C14 |
|
180.3 |
C4 |
C11 |
N10 |
H10 |
|
0.3 |
N10 |
C11 |
C4 |
C13 |
|
179.7 |
H4 |
C4 |
C3 |
N15 |
|
0.0 |
C3 |
C4 |
H4 |
C11 |
|
179.7 |
H4 |
C4 |
C11 |
N10 |
|
360.0 |
H4 |
C4 |
C11 |
C13 |
|
180.3 |
C14 |
C5 |
C6 |
H5 |
|
180.1 |
C6 |
C5 |
C14 |
N10 |
|
180.0 |
C6 |
C5 |
C14 |
C12 |
|
360.0 |
C7 |
C6 |
C5 |
N16 |
|
180.0 |
C5 |
C6 |
C7 |
C8 |
|
360.0 |
C5 |
C6 |
C7 |
H7 |
|
180.1 |
C5 |
C6 |
N16 |
CXH |
|
174.2 |
C5 |
C6 |
N16 |
CXI |
|
354.1 |
C6 |
C5 |
C14 |
H5 |
|
179.9 |
C14 |
C5 |
C6 |
C7 |
|
360.0 |
C14 |
C5 |
C6 |
N16 |
|
180.0 |
C8 |
C12 |
C14 |
C5 |
|
0.0 |
C9 |
C12 |
C14 |
C5 |
|
179.9 |
C11 |
N10 |
C14 |
C5 |
|
180.0 |
C5 |
C14 |
N10 |
H10 |
|
0.0 |
N10 |
C14 |
C5 |
C12 |
|
180.0 |
C6 |
C5 |
H5 |
C14 |
|
180.1 |
H5 |
C5 |
C6 |
C7 |
|
179.9 |
H5 |
C5 |
C6 |
N16 |
|
359.9 |
H5 |
C5 |
C14 |
N10 |
|
0.0 |
H5 |
C5 |
C14 |
C12 |
|
180.0 |
C7 |
C6 |
C5 |
C14 |
|
360.0 |
C7 |
C6 |
C5 |
H5 |
|
179.9 |
C5 |
C6 |
C7 |
N16 |
|
180.0 |
C7 |
C6 |
N16 |
CXH |
|
354.2 |
C7 |
C6 |
N16 |
CXI |
|
174.1 |
C8 |
C7 |
C6 |
H7 |
|
179.9 |
C6 |
C7 |
C8 |
C12 |
|
0.0 |
C6 |
C7 |
C8 |
H8 |
|
180.1 |
N16 |
C6 |
C5 |
C14 |
|
180.0 |
N16 |
C6 |
C5 |
H5 |
|
359.9 |
C5 |
C6 |
N16 |
C7 |
|
180.0 |
N16 |
C6 |
C7 |
C8 |
|
180.0 |
N16 |
C6 |
C7 |
H7 |
|
0.1 |
CXH |
N16 |
C6 |
CXI |
|
180.0 |
C6 |
N16 |
CXH |
H161 |
|
5.1 |
C6 |
N16 |
CXH |
H162 |
|
125.1 |
C6 |
N16 |
CXH |
H163 |
|
245.0 |
C6 |
N16 |
CXI |
H164 |
|
90.0 |
C6 |
N16 |
CXI |
H165 |
|
210.0 |
C6 |
N16 |
CXI |
H166 |
|
330.0 |
C8 |
C7 |
C6 |
N16 |
|
180.0 |
C6 |
C7 |
C8 |
H7 |
|
180.1 |
C12 |
C8 |
C7 |
H8 |
|
180.0 |
C7 |
C8 |
C12 |
C9 |
|
180.0 |
C7 |
C8 |
C12 |
C14 |
|
359.9 |
H7 |
C7 |
C6 |
N16 |
|
0.1 |
C6 |
C7 |
H7 |
C8 |
|
179.9 |
H7 |
C7 |
C8 |
C12 |
|
180.0 |
H7 |
C7 |
C8 |
H8 |
|
360.0 |
C5 |
C14 |
C12 |
C8 |
|
0.0 |
C12 |
C8 |
C7 |
H7 |
|
180.0 |
C7 |
C8 |
C12 |
H8 |
|
180.0 |
C8 |
C12 |
C9 |
C13 |
|
180.0 |
C8 |
C12 |
C9 |
H9 |
|
359.9 |
C9 |
C12 |
C8 |
C14 |
|
180.1 |
N10 |
C14 |
C12 |
C8 |
|
180.1 |
H8 |
C8 |
C7 |
H7 |
|
360.0 |
C7 |
C8 |
H8 |
C12 |
|
180.0 |
H8 |
C8 |
C12 |
C9 |
|
0.0 |
H8 |
C8 |
C12 |
C14 |
|
179.9 |
C1 |
C13 |
C9 |
C12 |
|
180.0 |
C5 |
C14 |
C12 |
C9 |
|
179.9 |
C9 |
C12 |
C8 |
H8 |
|
0.0 |
C8 |
C12 |
C9 |
C14 |
|
179.9 |
C13 |
C9 |
C12 |
H9 |
|
180.1 |
C12 |
C9 |
C13 |
C11 |
|
359.9 |
N10 |
C14 |
C12 |
C9 |
|
360.0 |
C9 |
C13 |
C1 |
H1 |
|
359.9 |
C1 |
C13 |
C9 |
C11 |
|
180.1 |
C4 |
C11 |
C13 |
C9 |
|
179.8 |
C12 |
C9 |
C13 |
H9 |
|
179.9 |
C13 |
C9 |
C12 |
C14 |
|
0.1 |
N10 |
C11 |
C13 |
C9 |
|
0.1 |
C12 |
C9 |
H9 |
C13 |
|
180.1 |
H9 |
C9 |
C12 |
C14 |
|
180.0 |
H9 |
C9 |
C13 |
C11 |
|
180.0 |
C1 |
C13 |
C11 |
N10 |
|
180.0 |
N10 |
C11 |
C4 |
H4 |
|
360.0 |
C4 |
C11 |
N10 |
C13 |
|
180.3 |
C5 |
C14 |
N10 |
C11 |
|
180.0 |
C9 |
C13 |
C11 |
N10 |
|
0.1 |
C14 |
N10 |
C11 |
H10 |
|
180.0 |
C11 |
N10 |
C14 |
C12 |
|
0.0 |
N10 |
C14 |
C5 |
H5 |
|
0.0 |
C5 |
C14 |
N10 |
C12 |
|
180.0 |
C8 |
C12 |
C14 |
N10 |
|
180.1 |
C9 |
C12 |
C14 |
N10 |
|
360.0 |
C11 |
N10 |
C14 |
H10 |
|
180.0 |
C14 |
N10 |
C11 |
C13 |
|
360.0 |
C11 |
N10 |
H10 |
C14 |
|
180.0 |
H10 |
N10 |
C11 |
C13 |
|
180.0 |
H10 |
N10 |
C14 |
C12 |
|
180.0 |
C11 |
C13 |
C1 |
H1 |
|
180.0 |
C1 |
C13 |
C11 |
C9 |
|
179.9 |
C13 |
C11 |
C4 |
H4 |
|
180.3 |
C4 |
C11 |
C13 |
N10 |
|
179.7 |
C11 |
C13 |
C9 |
H9 |
|
180.0 |
C13 |
C11 |
N10 |
C14 |
|
360.0 |
C13 |
C11 |
N10 |
H10 |
|
180.0 |
C12 |
C14 |
C5 |
H5 |
|
180.0 |
C5 |
C14 |
C12 |
N10 |
|
180.0 |
C14 |
C12 |
C8 |
H8 |
|
179.9 |
C8 |
C12 |
C14 |
C9 |
|
180.1 |
C14 |
C12 |
C9 |
C13 |
|
0.1 |
C14 |
C12 |
C9 |
H9 |
|
180.0 |
C12 |
C14 |
N10 |
H10 |
|
180.0 |
C3 |
N15 |
CX7 |
CX8 |
|
180.0 |
CX7 |
N15 |
CX8 |
H154 |
|
359.9 |
CX7 |
N15 |
CX8 |
H155 |
|
120.0 |
CX7 |
N15 |
CX8 |
H156 |
|
240.0 |
H151 |
CX7 |
N15 |
H152 |
|
240.1 |
H151 |
CX7 |
N15 |
H153 |
|
120.0 |
H152 |
CX7 |
N15 |
H153 |
|
240.0 |
C3 |
N15 |
CX8 |
CX7 |
|
180.0 |
CX8 |
N15 |
CX7 |
H151 |
|
0.1 |
CX8 |
N15 |
CX7 |
H152 |
|
120.0 |
CX8 |
N15 |
CX7 |
H153 |
|
240.0 |
H154 |
CX8 |
N15 |
H155 |
|
239.9 |
H154 |
CX8 |
N15 |
H156 |
|
120.0 |
H155 |
CX8 |
N15 |
H156 |
|
240.1 |
H151 |
CX7 |
N15 |
CX8 |
|
0.1 |
N15 |
CX7 |
H151 |
H152 |
|
120.0 |
N15 |
CX7 |
H151 |
H153 |
|
239.9 |
H152 |
CX7 |
H151 |
H153 |
|
119.9 |
H152 |
CX7 |
N15 |
CX8 |
|
120.0 |
N15 |
CX7 |
H152 |
H151 |
|
240.0 |
N15 |
CX7 |
H152 |
H153 |
|
120.1 |
H151 |
CX7 |
H152 |
H153 |
|
240.1 |
H153 |
CX7 |
N15 |
CX8 |
|
240.0 |
N15 |
CX7 |
H153 |
H151 |
|
120.1 |
N15 |
CX7 |
H153 |
H152 |
|
240.0 |
H151 |
CX7 |
H153 |
H152 |
|
119.9 |
N15 |
CX8 |
H154 |
H155 |
|
120.1 |
N15 |
CX8 |
H154 |
H156 |
|
240.0 |
H155 |
CX8 |
H154 |
H156 |
|
120.0 |
N15 |
CX8 |
H155 |
H154 |
|
240.0 |
N15 |
CX8 |
H155 |
H156 |
|
120.0 |
H154 |
CX8 |
H155 |
H156 |
|
240.0 |
N15 |
CX8 |
H156 |
H154 |
|
120.0 |
N15 |
CX8 |
H156 |
H155 |
|
240.0 |
H154 |
CX8 |
H156 |
H155 |
|
120.1 |
C6 |
N16 |
CXH |
CXI |
|
180.0 |
CXH |
N16 |
CXI |
H164 |
|
270.0 |
CXH |
N16 |
CXI |
H165 |
|
30.0 |
CXH |
N16 |
CXI |
H166 |
|
150.0 |
H161 |
CXH |
N16 |
H162 |
|
240.0 |
H161 |
CXH |
N16 |
H163 |
|
120.0 |
H162 |
CXH |
N16 |
H163 |
|
240.0 |
C6 |
N16 |
CXI |
CXH |
|
180.0 |
CXI |
N16 |
CXH |
H161 |
|
185.1 |
CXI |
N16 |
CXH |
H162 |
|
305.1 |
CXI |
N16 |
CXH |
H163 |
|
65.0 |
H164 |
CXI |
N16 |
H165 |
|
240.0 |
H164 |
CXI |
N16 |
H166 |
|
120.0 |
H165 |
CXI |
N16 |
H166 |
|
240.0 |
H161 |
CXH |
N16 |
CXI |
|
185.1 |
N16 |
CXH |
H161 |
H162 |
|
120.0 |
N16 |
CXH |
H161 |
H163 |
|
240.0 |
H162 |
CXH |
H161 |
H163 |
|
120.0 |
H162 |
CXH |
N16 |
CXI |
|
305.1 |
N16 |
CXH |
H162 |
H161 |
|
240.0 |
N16 |
CXH |
H162 |
H163 |
|
120.0 |
H161 |
CXH |
H162 |
H163 |
|
240.0 |
H163 |
CXH |
N16 |
CXI |
|
65.0 |
N16 |
CXH |
H163 |
H161 |
|
120.0 |
N16 |
CXH |
H163 |
H162 |
|
240.0 |
H161 |
CXH |
H163 |
H162 |
|
120.0 |
N16 |
CXI |
H164 |
H165 |
|
120.0 |
N16 |
CXI |
H164 |
H166 |
|
240.0 |
H165 |
CXI |
H164 |
H166 |
|
120.1 |
N16 |
CXI |
H165 |
H164 |
|
240.0 |
N16 |
CXI |
H165 |
H166 |
|
120.0 |
H164 |
CXI |
H165 |
H166 |
|
240.0 |
N16 |
CXI |
H166 |
H164 |
|
120.0 |
N16 |
CXI |
H166 |
H165 |
|
240.0 |
H164 |
CXI |
H166 |
H165 |
|
120.0 |