PDB Chemical Component ANP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ANP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.525 1.480
PG O2G 1.502 1.611
PG O3G 1.466 1.610
PG N3B 1.632 1.683
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.967
PB O1B 1.464 1.479
PB O2B 1.472 1.611
PB N3B 1.664 1.683
PB O3A 1.590 1.611
O2B HOB2 0.950 0.967
N3B HNB1 1.000 1.010
PA O1A 1.478 1.480
PA O2A 1.502 1.610
PA O3A 1.623 1.609
PA O5' 1.605 1.611
O2A HOA2 0.950 0.967
O5' C5' 1.436 1.429
C5' C4' 1.514 1.530
C5' H5'1 1.100 1.089
C5' H5'2 1.100 1.090
C4' O4' 1.449 1.437
C4' C3' 1.517 1.541
C4' H4' 1.100 1.090
O4' C1' 1.446 1.444
C3' O3' 1.435 1.429
C3' C2' 1.506 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.438 1.429
C2' C1' 1.528 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.445 1.465
C1' H1' 1.100 1.090
N9 C8 1.375 1.364
N9 C4 1.377 1.372
C8 N7 1.303 1.300
C8 H8 1.080 1.080
N7 C5 1.391 1.355
C5 C6 1.401 1.406
C5 C4 1.367 1.404
C6 N6 1.343 1.383
C6 N1 1.363 1.329
N6 HN61 1.000 0.969
N6 HN62 1.000 0.971
N1 C2 1.333 1.320
C2 N3 1.324 1.317
C2 H2 1.080 1.079
N3 C4 1.370 1.328

Bond Angles for ANP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 117.1 109.5
O1G PG O3G 111.3 109.5
O1G PG N3B 104.5 109.5
O2G PG O3G 112.5 109.5
O2G PG N3B 101.6 109.5
PG O2G HOG2 109.5 114.0
O3G PG N3B 108.8 109.5
PG O3G HOG3 109.5 114.0
PG N3B PB 124.1 111.0
PG N3B HNB1 104.8 111.0
O1B PB O2B 120.2 109.5
O1B PB N3B 109.1 109.5
O1B PB O3A 105.8 109.5
O2B PB N3B 110.0 109.5
O2B PB O3A 107.3 109.4
PB O2B HOB2 109.5 114.0
N3B PB O3A 103.0 109.5
PB N3B HNB1 104.9 111.0
PB O3A PA 126.8 134.0
O1A PA O2A 120.1 109.4
O1A PA O3A 109.7 109.5
O1A PA O5' 105.9 109.4
O2A PA O3A 111.7 109.5
O2A PA O5' 108.2 109.5
PA O2A HOA2 109.5 114.0
O3A PA O5' 99.0 109.5
PA O5' C5' 120.0 123.0
O5' C5' C4' 110.2 109.4
O5' C5' H5'1 109.2 109.5
O5' C5' H5'2 109.2 109.5
C4' C5' H5'1 109.2 109.5
C4' C5' H5'2 109.3 109.5
C5' C4' O4' 111.1 109.9
C5' C4' C3' 112.3 109.8
C5' C4' H4' 105.3 109.9
H5'1 C5' H5'2 109.7 109.5
O4' C4' C3' 106.0 107.3
O4' C4' H4' 111.7 109.9
C4' O4' C1' 108.3 107.0
C3' C4' H4' 110.6 110.0
C4' C3' O3' 112.7 110.5
C4' C3' C2' 102.8 104.2
C4' C3' H3' 112.9 110.5
O4' C1' C2' 107.5 103.5
O4' C1' N9 110.4 110.6
O4' C1' H1' 110.4 110.6
O3' C3' C2' 112.6 110.5
O3' C3' H3' 103.1 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 113.0 110.6
C3' C2' O2' 109.5 110.9
C3' C2' C1' 103.5 102.1
C3' C2' H2' 113.1 110.9
O2' C2' C1' 108.8 110.9
O2' C2' H2' 108.2 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 113.7 111.0
C2' C1' N9 110.2 110.6
C2' C1' H1' 110.6 110.6
N9 C1' H1' 107.7 110.7
C1' N9 C8 128.7 126.3
C1' N9 C4 125.5 126.3
C8 N9 C4 105.8 107.5
N9 C8 N7 113.4 110.0
N9 C8 H8 123.3 125.0
N9 C4 C5 105.8 106.0
N9 C4 N3 126.8 134.9
N7 C8 H8 123.3 125.0
C8 N7 C5 104.1 109.5
N7 C5 C6 132.3 134.7
N7 C5 C4 110.9 107.1
C6 C5 C4 116.8 118.2
C5 C6 N6 122.6 120.8
C5 C6 N1 117.4 118.4
C5 C4 N3 127.3 119.1
N6 C6 N1 120.1 120.8
C6 N6 HN61 109.5 120.1
C6 N6 HN62 109.5 120.0
C6 N1 C2 119.4 121.2
HN61 N6 HN62 109.5 119.9
N1 C2 N3 128.7 122.4
N1 C2 H2 115.7 118.8
N3 C2 H2 115.6 118.7
C2 N3 C4 110.3 120.6

Torsion Angles for ANP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 228.6 240.0
O2G PG O1G N3B 111.4 120.0
O1G PG O2G HOG2 0.0 60.0
O3G PG O1G N3B 242.8 240.0
O1G PG O3G HOG3 360.0 180.0
O1G PG N3B PB 340.2 300.0
O1G PG N3B HNB1 100.1 64.0
O1G PG O2G O3G 130.8 120.0
O1G PG O2G N3B 246.9 240.0
O3G PG O2G N3B 116.1 120.0
O2G PG O3G HOG3 133.7 300.0
O2G PG N3B PB 217.9 180.0
O2G PG N3B HNB1 337.9 304.0
O1G PG O3G O2G 226.3 240.0
O1G PG O3G N3B 114.6 120.0
O2G PG O3G N3B 248.3 240.0
O3G PG O2G HOG2 229.2 300.0
O3G PG N3B PB 99.1 60.0
O3G PG N3B HNB1 219.1 184.0
O1G PG N3B O2G 122.2 120.0
O1G PG N3B O3G 241.1 240.0
O2G PG N3B O3G 118.8 120.0
N3B PG O2G HOG2 113.1 180.0
N3B PG O3G HOG3 245.4 60.0
O1B PB N3B PG 277.2 300.0
O2B PB N3B PG 51.0 60.0
PG N3B PB O3A 165.2 180.0
PB N3B PG HNB1 240.0 236.0
HOG2 O2G PG O3G 229.2 300.0
HOG2 O2G PG N3B 113.1 180.0
HOG3 O3G PG N3B 245.4 60.0
PG N3B PB O1B 277.2 300.0
O2B PB O1B N3B 231.6 240.0
O2B PB O1B O3A 121.4 120.0
O1B PB O2B HOB2 0.0 180.0
N3B PB O1B O3A 249.8 240.0
O1B PB N3B HNB1 157.2 176.1
O1B PB O3A PA 188.9 60.0
PG N3B PB O2B 51.0 60.0
O1B PB O2B N3B 128.0 120.0
O1B PB O2B O3A 239.3 240.0
N3B PB O2B O3A 111.4 120.0
O2B PB N3B HNB1 291.1 296.1
O2B PB O3A PA 59.5 300.0
PG N3B PB HNB1 120.0 123.9
O1B PB N3B O2B 226.2 240.0
O1B PB N3B O3A 112.0 120.0
O2B PB N3B O3A 245.9 240.1
N3B PB O2B HOB2 232.1 60.0
N3B PB O3A PA 303.4 180.0
O1B PB O3A O2B 129.4 120.0
O1B PB O3A N3B 245.5 240.0
O2B PB O3A N3B 116.1 120.0
O3A PB O2B HOB2 120.7 300.0
O3A PB N3B HNB1 45.2 56.0
O1A PA O3A PB 267.1 320.0
O2A PA O3A PB 42.8 80.0
PB O3A PA O5' 156.6 200.0
HOB2 O2B PB N3B 232.1 60.0
HOB2 O2B PB O3A 120.7 300.0
PG N3B HNB1 PB 227.9 236.0
HNB1 N3B PB O3A 45.2 56.0
PB O3A PA O1A 267.1 320.0
O2A PA O1A O3A 228.6 240.0
O2A PA O1A O5' 122.7 120.0
O1A PA O2A HOA2 360.0 180.0
O3A PA O1A O5' 254.1 240.0
O1A PA O5' C5' 187.6 55.0
PB O3A PA O2A 42.8 80.0
O1A PA O2A O3A 130.5 120.0
O1A PA O2A O5' 238.4 240.1
O3A PA O2A O5' 107.9 120.0
O2A PA O5' C5' 57.6 295.0
O1A PA O3A O2A 224.3 240.0
O1A PA O3A O5' 110.5 120.0
O2A PA O3A O5' 246.2 240.0
O3A PA O2A HOA2 229.4 60.0
O3A PA O5' C5' 301.1 175.0
O1A PA O5' O2A 130.0 119.9
O1A PA O5' O3A 246.5 240.0
O2A PA O5' O3A 116.5 120.0
O5' PA O2A HOA2 121.5 300.0
PA O5' C5' C4' 228.1 180.0
PA O5' C5' H5'1 348.1 300.0
PA O5' C5' H5'2 108.1 60.0
HOA2 O2A PA O3A 229.4 60.0
HOA2 O2A PA O5' 121.5 300.0
C4' C5' O5' H5'1 240.0 240.0
C4' C5' O5' H5'2 120.0 120.0
O5' C5' C4' O4' 301.8 66.5
O5' C5' C4' C3' 60.2 184.3
O5' C5' C4' H4' 180.6 305.5
H5'1 C5' O5' H5'2 240.0 240.0
O5' C5' C4' H5'1 120.0 120.0
O5' C5' C4' H5'2 240.0 240.0
H5'1 C5' C4' H5'2 120.0 120.0
O4' C4' C5' C3' 241.5 242.2
O4' C4' C5' H4' 121.1 121.0
C5' C4' O4' C1' 143.9 145.9
C3' C4' C5' H4' 239.6 238.8
C5' C4' C3' O3' 83.3 119.9
C5' C4' C3' C2' 204.9 238.5
C5' C4' C3' H3' 326.9 357.4
O5' C5' H5'1 C4' 239.4 240.0
O5' C5' H5'1 H5'2 119.7 120.0
C4' C5' H5'1 H5'2 240.3 240.0
H5'1 C5' C4' O4' 181.8 306.5
H5'1 C5' C4' C3' 300.3 64.3
H5'1 C5' C4' H4' 60.6 185.5
O5' C5' H5'2 C4' 120.6 120.0
O5' C5' H5'2 H5'1 240.3 240.0
C4' C5' H5'2 H5'1 119.7 120.1
H5'2 C5' C4' O4' 61.8 186.4
H5'2 C5' C4' C3' 180.3 304.3
H5'2 C5' C4' H4' 300.6 65.4
O4' C4' C5' H5'1 181.8 306.5
O4' C4' C5' H5'2 61.8 186.4
C5' C4' O4' C3' 122.2 119.4
C5' C4' O4' H4' 242.7 239.0
C3' C4' O4' H4' 120.5 119.6
O4' C4' C3' O3' 204.8 239.3
O4' C4' C3' C2' 326.4 358.0
O4' C4' C3' H3' 88.4 116.8
C4' O4' C1' C2' 359.0 319.9
C4' O4' C1' N9 238.7 201.5
C4' O4' C1' H1' 119.7 78.4
C3' C4' C5' H5'1 300.3 64.3
C3' C4' C5' H5'2 180.3 304.3
C5' C4' C3' O4' 238.5 240.6
C5' C4' C3' H4' 117.3 121.1
O4' C4' C3' H4' 238.8 240.5
C3' C4' O4' C1' 21.7 26.5
O3' C3' C4' C2' 238.5 241.4
O3' C3' C4' H3' 116.4 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 237.9 241.1
C4' C3' C2' O2' 276.1 221.0
C4' C3' C2' C1' 32.0 339.1
C4' C3' C2' H2' 155.4 97.4
H4' C4' C5' H5'1 60.6 185.5
H4' C4' C5' H5'2 300.6 65.4
C5' C4' H4' O4' 120.8 121.0
C5' C4' H4' C3' 238.5 238.9
O4' C4' H4' C3' 117.7 117.9
H4' C4' O4' C1' 261.2 266.9
H4' C4' C3' O3' 326.0 358.8
H4' C4' C3' C2' 87.6 117.4
H4' C4' C3' H3' 209.6 236.3
C1' O4' C4' C3' 21.7 26.5
C1' O4' C4' H4' 261.2 266.9
C3' C2' C1' O4' 340.1 37.0
O2' C2' C1' O4' 96.4 155.2
O4' C1' C2' H2' 217.0 278.8
C2' C1' O4' N9 120.2 118.5
C2' C1' O4' H1' 239.2 241.5
N9 C1' O4' H1' 119.0 123.1
O4' C1' N9 C8 39.9 23.5
O4' C1' N9 C4 220.8 203.3
O3' C3' C4' H4' 326.0 358.8
C4' C3' O3' C2' 115.8 114.8
C4' C3' O3' H3' 237.9 237.5
C2' C3' O3' H3' 122.1 122.7
O3' C3' C2' O2' 37.7 339.6
O3' C3' C2' C1' 153.6 97.8
O3' C3' C2' H2' 277.0 216.0
C2' C3' C4' H4' 87.6 117.4
C4' C3' C2' O3' 238.4 241.4
C4' C3' C2' H3' 122.0 118.8
O4' C1' C2' C3' 340.1 37.0
O3' C3' C2' H3' 243.6 237.4
C2' C3' O3' HO3' 64.2 65.3
O2' C2' C3' C1' 244.1 241.8
O2' C2' C3' H2' 120.7 123.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 236.5 241.7
C3' C2' C1' N9 100.4 155.5
C3' C2' C1' H1' 219.4 278.5
H3' C3' C4' H4' 209.6 236.3
C4' C3' H3' O3' 121.9 122.5
C4' C3' H3' C2' 243.8 245.1
O3' C3' H3' C2' 121.9 122.6
H3' C3' O3' HO3' 302.1 302.6
H3' C3' C2' O2' 154.1 102.2
H3' C3' C2' C1' 269.9 220.4
H3' C3' C2' H2' 33.4 338.6
HO3' O3' C3' C2' 64.2 65.3
HO3' O3' C3' H3' 302.1 302.6
O4' C1' C2' O2' 96.4 155.2
O2' C2' C3' H3' 154.1 102.2
C3' C2' O2' C1' 112.5 112.7
C3' C2' O2' H2' 236.4 236.4
C1' C2' O2' H2' 123.9 123.7
O2' C2' C1' N9 216.8 273.7
O2' C2' C1' H1' 335.8 36.7
O4' C1' C2' N9 239.6 241.5
O4' C1' C2' H1' 120.6 118.5
C1' C2' C3' H3' 269.9 220.4
C3' C2' C1' O2' 243.6 241.8
C3' C2' C1' H2' 123.1 118.2
O2' C2' C1' H2' 239.4 236.4
C1' C2' O2' HO2' 67.5 185.8
N9 C1' C2' H1' 241.0 237.0
C2' C1' N9 C8 281.3 269.5
C2' C1' N9 C4 102.2 89.2
H2' C2' C3' H3' 33.4 338.6
C3' C2' H2' O2' 121.4 123.6
C3' C2' H2' C1' 242.3 247.3
O2' C2' H2' C1' 120.9 123.6
H2' C2' O2' HO2' 303.6 62.1
H2' C2' C1' N9 337.4 37.3
H2' C2' C1' H1' 96.4 160.3
HO2' O2' C2' C1' 67.5 185.8
HO2' O2' C2' H2' 303.6 62.1
O4' C1' N9 C2' 118.6 114.0
O4' C1' N9 H1' 239.4 237.0
N9 C1' C2' H2' 337.4 37.3
C2' C1' N9 H1' 120.8 123.0
C8 N9 C1' C4 179.1 180.2
C1' N9 C8 N7 180.8 180.0
C1' N9 C8 H8 0.8 0.1
C1' N9 C4 C5 178.2 179.8
C1' N9 C4 N3 0.4 0.7
O4' C1' H1' C2' 241.1 246.0
O4' C1' H1' N9 120.6 123.0
H1' C1' C2' H2' 96.4 160.3
C2' C1' H1' N9 239.5 237.1
H1' C1' N9 C8 160.5 146.5
H1' C1' N9 C4 341.4 326.3
C8 N9 C1' H1' 160.5 146.5
C1' N9 C8 C4 180.7 179.8
C8 N9 C4 C5 358.9 359.6
C8 N9 C4 N3 181.2 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.9 0.0
C4 N9 C1' H1' 341.4 326.3
C1' N9 C4 C8 179.3 180.2
C4 N9 C8 N7 0.1 0.2
C4 N9 C8 H8 180.1 180.2
N7 C5 C4 N9 1.7 0.4
C6 C5 C4 N9 183.7 180.2
C5 C4 N9 N3 177.8 179.1
C2 N3 C4 N9 178.7 179.6
N7 C8 N9 C4 0.1 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 176.0 180.0
C8 N7 C5 C4 358.4 359.7
H8 C8 N9 C4 180.1 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.9 180.0
N9 C4 C5 N7 1.7 0.4
C5 N7 C8 H8 180.9 180.0
C6 C5 N7 C4 177.6 180.3
N7 C5 C6 N6 0.0 360.0
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 179.4 179.6
N9 C4 C5 C6 183.7 180.2
N7 C5 C6 C4 182.5 179.7
C6 C5 C4 N3 1.4 359.4
N6 C6 C5 N1 180.1 180.0
C5 C6 N6 HN61 179.9 0.0
C5 C6 N6 HN62 299.9 180.0
C5 C6 N1 C2 0.9 0.0
N9 C4 C5 N3 182.3 180.8
N7 C5 C4 C6 178.0 180.2
C4 C5 C6 N6 177.5 180.3
C4 C5 C6 N1 357.5 0.3
C2 N3 C4 C5 1.4 0.6
N6 C6 C5 C4 177.5 180.3
C5 C6 N6 N1 179.9 180.0
N6 C6 N1 C2 180.8 180.0
HN61 N6 C6 HN62 240.0 180.0
N1 C6 C5 C4 357.5 0.3
C5 C6 N1 N6 180.1 180.0
N1 C6 N6 HN61 360.0 180.0
N1 C6 N6 HN62 120.0 360.0
C6 N1 C2 N3 2.5 360.0
C6 N1 C2 H2 182.5 180.0
HN61 N6 C6 N1 360.0 180.0
C6 N6 HN61 HN62 120.0 180.0
HN62 N6 C6 N1 120.0 360.0
C6 N6 HN62 HN61 240.0 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 356.5 359.7
N9 C4 N3 C2 178.7 179.6
C5 C4 N3 C2 1.4 0.6
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 176.5 179.7
N9 C4 N3 C5 177.3 179.0
C4 N3 C2 H2 176.5 179.7