PDB Chemical Component AMZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AMZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O5	C6	1.235	1.216
C6	N2	1.313	1.348
C6	C3A	1.533	1.465
N2	H11	1.020	0.970
N2	H12	1.020	0.969
C3A	C7A	1.419	1.386
C3A	N1	1.382	1.361
C7A	N3	1.426	1.381
C7A	N	1.366	1.363
N3	H9	1.021	0.970
N3	H10	1.020	0.970
N1	C5	1.363	1.299
C5	N	1.411	1.364
C5	H13	1.103	1.080
N	C1	1.514	1.464
C1	C2	1.524	1.544
C1	O	1.416	1.444
C1	H2	1.116	1.090
C2	C3	1.521	1.546
C2	O1	1.426	1.429
C2	H3	1.114	1.090
C3	O2	1.430	1.430
C3	C	1.541	1.544
C3	H4	1.115	1.089
O2	H5	0.950	0.967
O1	H1	0.950	0.968
O	C	1.445	1.444
C	C4	1.538	1.530
C	H6	1.116	1.090
C4	O3	1.448	1.427
C4	H7	1.116	1.090
C4	H8	1.116	1.089
O3	P	1.634	1.610
P	OP1	1.613	1.610
P	O4	1.602	1.610
P	OP2	1.592	1.479
OP1	H15	0.950	0.967
O4	H14	0.950	0.966

Bond Angles for AMZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O5	C6	N2	118.0	120.0
O5	C6	C3A	120.8	120.0
N2	C6	C3A	121.1	120.0
C6	N2	H11	121.1	120.0
C6	N2	H12	118.0	120.0
C6	C3A	C7A	123.5	126.4
C6	C3A	N1	126.0	126.3
H11	N2	H12	120.9	120.0
C7A	C3A	N1	110.5	107.3
C3A	C7A	N3	127.0	126.8
C3A	C7A	N	111.7	106.4
C3A	N1	C5	99.2	109.2
N3	C7A	N	121.2	126.8
C7A	N3	H9	127.0	120.0
C7A	N3	H10	106.1	119.9
C7A	N	C5	98.0	107.6
C7A	N	C1	128.5	126.3
H9	N3	H10	106.0	120.1
N1	C5	N	120.5	109.5
N1	C5	H13	118.0	125.2
N	C5	H13	121.4	125.2
C5	N	C1	133.2	126.1
N	C1	C2	106.0	110.4
N	C1	O	112.0	110.4
N	C1	H2	113.2	110.3
C2	C1	O	117.0	104.9
C2	C1	H2	107.6	110.3
C1	C2	C3	97.0	104.0
C1	C2	O1	110.7	110.8
C1	C2	H3	119.5	110.4
O	C1	H2	101.1	110.4
C1	O	C	101.0	105.2
C3	C2	O1	117.2	110.5
C3	C2	H3	113.2	110.5
C2	C3	O2	107.2	110.5
C2	C3	C	102.8	104.1
C2	C3	H4	116.6	110.6
O1	C2	H3	100.2	110.5
C2	O1	H1	110.8	106.8
O2	C3	C	113.5	110.5
O2	C3	H4	106.4	110.5
C3	O2	H5	107.2	106.8
C	C3	H4	110.5	110.5
C3	C	O	110.4	104.8
C3	C	C4	109.0	110.5
C3	C	H6	109.3	110.4
O	C	C4	109.8	110.4
O	C	H6	108.5	110.4
C4	C	H6	109.9	110.3
C	C4	O3	114.0	109.5
C	C4	H7	110.5	109.5
C	C4	H8	110.6	109.4
O3	C4	H7	110.6	109.4
O3	C4	H8	110.6	109.5
C4	O3	P	117.7	106.8
H7	C4	H8	99.7	109.5
O3	P	OP1	102.9	109.5
O3	P	O4	113.5	109.5
O3	P	OP2	104.8	109.5
OP1	P	O4	109.7	109.4
OP1	P	OP2	116.3	109.4
P	OP1	H15	102.9	106.8
O4	P	OP2	109.5	109.5
P	O4	H14	113.4	106.8

Torsion Angles for AMZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C6	O5	C3A	179.7	180.0
O5	C6	N2	H11	0.3	0.0
O5	C6	N2	H12	180.0	179.7
O5	C6	C3A	C7A	359.9	359.8
O5	C6	C3A	N1	180.1	180.0
O5	C6	N2	C3A	180.3	180.0
N2	C6	C3A	C7A	180.2	179.7
N2	C6	C3A	N1	0.5	360.0
H11	N2	C6	H12	180.4	180.3
O5	C6	C3A	N2	179.7	180.0
C3A	C6	N2	H11	180.0	180.0
C3A	C6	N2	H12	359.7	359.8
C7A	C3A	C6	N1	179.8	179.7
C6	C3A	C7A	N3	0.4	0.2
C6	C3A	C7A	N	180.4	179.8
C6	C3A	N1	C5	179.5	180.0
H11	N2	C6	C3A	180.0	180.0
C6	N2	H11	H12	179.6	179.7
H12	N2	C6	C3A	359.7	359.8
C6	N2	H12	H11	180.4	180.3
C6	C3A	C7A	N1	180.2	180.2
C7A	C3A	N1	C5	359.7	0.3
N3	C7A	C3A	N	180.0	180.4
C3A	C7A	N3	H9	180.0	359.6
C3A	C7A	N3	H10	54.8	179.6
C3A	C7A	N	C5	360.0	0.4
C3A	C7A	N	C1	175.4	180.1
C6	C3A	N1	C7A	179.8	179.8
N1	C3A	C7A	N3	180.2	179.9
N1	C3A	C7A	N	0.2	359.6
C3A	N1	C5	N	0.3	360.0
C3A	N1	C5	H13	180.4	179.9
N3	C7A	C3A	N1	180.2	179.9
C3A	C7A	N3	N	180.0	179.6
N3	C7A	N	C5	179.9	180.1
N3	C7A	N	C1	355.3	359.7
H9	N3	C7A	H10	125.3	180.0
N	C7A	C3A	N1	0.2	359.6
C3A	C7A	N	N3	180.0	180.4
N	C7A	N3	H9	0.1	180.0
N	C7A	N3	H10	234.8	360.0
N1	C5	N	C7A	359.8	359.7
C7A	N	C5	H13	179.8	179.8
C5	N	C7A	C1	184.6	180.3
C7A	N	C1	C2	124.1	91.8
C7A	N	C1	O	252.9	207.4
C7A	N	C1	H2	6.4	329.7
H9	N3	C7A	N	0.1	180.0
C7A	N3	H9	H10	234.7	180.0
H10	N3	C7A	N	234.8	360.0
C7A	N3	H10	H9	137.3	180.0
C7A	N	C5	N1	359.8	359.7
N	C5	N1	H13	180.0	180.0
N1	C5	N	C1	184.7	180.1
C7A	N	C5	C1	175.1	179.7
N1	C5	N	H13	180.0	180.0
C5	N	C1	C2	297.9	271.4
C5	N	C1	O	66.7	27.0
C5	N	C1	H2	180.1	149.3
N1	C5	H13	N	180.0	180.1
H13	C5	N	C1	4.7	0.1
C7A	N	C1	C5	186.3	180.4
C1	N	C5	H13	4.7	0.1
C2	C1	N	O	231.2	244.4
C2	C1	N	H2	117.8	122.1
N	C1	C2	C3	98.9	142.8
N	C1	C2	O1	221.6	261.5
N	C1	C2	H3	337.1	24.2
O	C1	N	H2	246.6	237.7
N	C1	O	C	245.4	200.6
N	C1	C2	O	125.8	118.9
N	C1	C2	H2	238.6	237.9
O	C1	C2	H2	112.8	118.9
C2	C1	O	C	8.2	319.6
C3	C2	C1	O1	237.4	241.2
C3	C2	C1	H3	121.8	118.5
C1	C2	C3	O2	151.6	118.8
C1	C2	C3	C	31.7	0.2
C1	C2	C3	H4	270.6	241.5
O1	C2	C1	H3	244.4	237.3
C1	C2	O1	H1	180.1	183.8
N	C1	O	C2	237.2	241.1
N	C1	O	H2	120.7	122.2
C2	C1	O	H2	243.5	241.1
O	C1	C2	C3	333.1	23.8
O	C1	C2	O1	95.8	142.6
O	C1	C2	H3	211.4	265.3
C3	C	O	C1	14.9	40.5
C1	O	C	C4	135.0	159.5
C1	O	C	H6	255.1	281.7
N	C1	H2	C2	116.8	122.2
N	C1	H2	O	240.1	237.7
C2	C1	H2	O	123.2	115.5
H2	C1	C2	C3	220.3	264.9
H2	C1	C2	O1	342.9	23.7
H2	C1	C2	H3	98.5	146.4
H2	C1	O	C	124.7	78.4
C3	C2	C1	O	333.1	23.8
C3	C2	C1	H2	220.3	264.9
C1	C2	C3	O1	117.7	119.0
C1	C2	C3	H3	233.6	241.5
O1	C2	C3	H3	116.0	122.6
C3	C2	O1	H1	290.0	298.5
O2	C3	C2	C	119.9	118.7
O2	C3	C2	H4	241.0	237.3
C2	C3	O2	H5	180.1	65.4
C	C3	C2	H4	121.0	118.7
C2	C3	C	O	328.1	335.9
C2	C3	C	C4	207.4	217.0
C2	C3	C	H6	87.3	94.8
O1	C2	C1	O	95.8	142.6
O1	C2	C1	H2	342.9	23.7
C1	C2	O1	C3	250.0	245.3
C1	C2	O1	H3	127.1	122.7
C3	C2	O1	H3	237.1	237.4
O1	C2	C3	O2	33.9	359.9
O1	C2	C3	C	274.0	241.2
O1	C2	C3	H4	152.9	122.5
H3	C2	C1	O	211.4	265.3
H3	C2	C1	H2	98.5	146.4
C1	C2	H3	C3	113.3	114.5
C1	C2	H3	O1	239.0	237.1
C3	C2	H3	O1	125.7	122.6
H3	C2	C3	O2	278.0	237.3
H3	C2	C3	C	158.0	118.6
H3	C2	C3	H4	37.0	360.0
H3	C2	O1	H1	52.9	61.1
O2	C3	C2	O1	33.9	359.9
O2	C3	C2	H3	278.0	237.3
C2	C3	O2	C	247.2	245.3
C2	C3	O2	H4	125.4	122.7
C	C3	O2	H4	238.2	237.4
O2	C3	C	O	212.7	217.2
O2	C3	C	C4	92.0	98.3
O2	C3	C	H6	331.9	336.1
C1	O	C	C3	14.9	40.5
C	C3	C2	O1	274.0	241.2
C	C3	C2	H3	158.0	118.6
C2	C3	C	O2	115.4	118.7
C2	C3	C	H4	234.9	241.2
O2	C3	C	H4	119.5	122.6
C	C3	O2	H5	292.9	180.0
O	C	C3	C4	120.6	118.9
O	C	C3	H6	240.7	241.1
C4	C	C3	H6	120.1	122.2
C3	C	C4	O3	57.5	176.9
C3	C	C4	H7	182.8	296.9
C3	C	C4	H8	292.2	57.0
H4	C3	C2	O1	152.9	122.5
H4	C3	C2	H3	37.0	360.0
C2	C3	H4	O2	240.6	237.3
C2	C3	H4	C	116.9	114.7
O2	C3	H4	C	236.3	237.4
H4	C3	O2	H5	54.7	302.6
H4	C3	C	O	93.2	94.7
H4	C3	C	C4	332.6	335.7
H4	C3	C	H6	212.5	213.6
H5	O2	C3	C	292.9	180.0
H5	O2	C3	H4	54.7	302.6
H1	O1	C2	H3	52.9	61.1
C	O	C1	H2	124.7	78.4
O	C	C3	H4	93.2	94.7
C3	C	O	C4	239.9	241.0
C3	C	O	H6	119.8	118.8
C4	C	O	H6	239.9	237.8
O	C	C4	O3	296.5	61.5
O	C	C4	H7	61.8	181.4
O	C	C4	H8	171.2	301.5
C4	C	C3	H4	332.6	335.7
C3	C	C4	O	121.0	115.5
C3	C	C4	H6	240.2	237.7
O	C	C4	H6	119.3	122.3
O3	C4	C	H7	234.7	240.0
O3	C4	C	H8	125.3	120.0
C	C4	O3	P	192.2	180.1
H7	C4	C	H8	250.6	239.9
H6	C	C3	H4	212.5	213.6
C3	C	H6	O	239.6	244.6
C3	C	H6	C4	119.6	122.3
O	C	H6	C4	240.0	237.8
H6	C	C4	O3	177.2	299.2
H6	C	C4	H7	302.5	59.1
H6	C	C4	H8	52.0	179.2
O3	C4	C	H6	177.2	299.2
C	C4	O3	H7	125.3	120.0
C	C4	O3	H8	234.7	240.0
H7	C4	O3	H8	109.5	120.1
C4	O3	P	OP1	61.0	180.0
C4	O3	P	O4	179.5	299.9
C4	O3	P	OP2	298.9	60.0
H7	C4	C	H6	302.5	59.1
C	C4	H7	O3	232.8	240.0
C	C4	H7	H8	116.4	120.0
O3	C4	H7	H8	243.6	240.0
H7	C4	O3	P	66.9	60.1
H8	C4	C	H6	52.0	179.2
C	C4	H8	O3	127.2	120.0
C	C4	H8	H7	243.6	240.0
O3	C4	H8	H7	116.4	120.0
H8	C4	O3	P	317.4	300.0
P	O3	C4	H7	66.9	60.1
P	O3	C4	H8	317.4	300.0
OP1	P	O3	O4	241.5	240.1
OP1	P	O3	OP2	122.1	120.0
O3	P	OP1	H15	180.1	180.0
O4	P	O3	OP2	240.6	239.9
O3	P	O4	H14	180.0	300.1
O3	P	OP1	O4	121.1	120.0
O3	P	OP1	OP2	246.1	240.0
O4	P	OP1	OP2	125.0	120.0
OP1	P	O4	H14	294.5	60.0
O3	P	O4	OP1	245.5	240.0
O3	P	O4	OP2	116.7	120.1
OP1	P	O4	OP2	231.2	240.0
O4	P	OP1	H15	59.0	60.0
O3	P	OP2	OP1	112.9	120.0
O3	P	OP2	O4	238.0	240.0
OP1	P	OP2	O4	125.1	119.9
OP2	P	OP1	H15	294.0	300.0
OP2	P	O4	H14	63.3	180.0
H15	OP1	P	O4	59.0	60.0
H15	OP1	P	OP2	294.0	300.0
H14	O4	P	OP2	63.3	180.0