PDB Chemical Component AMV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AMV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.554	1.533
C1	O1	1.424	1.427
C1	O5	1.435	1.427
C1	H1	1.115	1.097
C2	C3	1.545	1.532
C2	N2	1.476	1.447
C2	H2	1.115	1.097
C3	C4	1.535	1.530
C3	O3	1.444	1.428
C3	H3	1.115	1.098
C4	C5	1.539	1.531
C4	O4	1.437	1.425
C4	H4	1.115	1.097
C5	C6	1.538	1.524
C5	O5	1.446	1.429
C5	H5	1.116	1.098
C6	O6	1.446	1.416
C6	H61	1.114	1.090
C6	H62	1.115	1.090
C7	C8	1.538	1.492
C7	O7	1.222	1.226
C7	N2	1.356	1.381
C8	H81	1.115	1.102
C8	H82	1.115	1.103
C8	H83	1.115	1.101
C9	C10	1.561	1.515
C9	C11	1.545	1.518
C9	O3	1.446	1.419
C9	H9	1.115	1.094
C10	O11	1.223	1.224
C10	OXT	1.370	1.358
C11	H111	1.115	1.096
C11	H112	1.114	1.095
C11	H113	1.115	1.094
O1	C12	1.422	1.419
O4	HO4	0.950	0.970
O6	HO6	0.950	0.972
N2	HN2	1.020	1.015
C12	H121	1.115	1.093
C12	H122	1.115	1.093
C12	H123	1.115	1.092
OXT	HX	0.950	0.981

Bond Angles for AMV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	109.3	108.3
C2	C1	O5	109.7	110.5
C2	C1	H1	109.7	111.1
C1	C2	C3	111.7	111.1
C1	C2	N2	111.8	110.4
C1	C2	H2	107.4	109.9
O1	C1	O5	110.0	109.4
O1	C1	H1	109.3	107.8
C1	O1	C12	112.1	111.3
O5	C1	H1	108.9	109.7
C1	O5	C5	117.6	112.7
C3	C2	N2	112.6	110.3
C3	C2	H2	106.4	109.4
C2	C3	C4	106.7	111.6
C2	C3	O3	108.4	109.4
C2	C3	H3	108.5	111.1
N2	C2	H2	106.4	105.5
C2	N2	C7	122.9	123.1
C2	N2	HN2	123.0	118.5
C4	C3	O3	96.5	108.0
C4	C3	H3	118.5	109.7
C3	C4	C5	110.2	110.7
C3	C4	O4	109.2	109.4
C3	C4	H4	108.3	109.5
O3	C3	H3	117.2	106.8
C3	O3	C9	120.5	111.3
C5	C4	O4	106.9	109.3
C5	C4	H4	110.7	110.3
C4	C5	C6	113.5	111.8
C4	C5	O5	109.9	109.7
C4	C5	H5	106.1	110.6
O4	C4	H4	111.6	107.7
C4	O4	HO4	109.3	106.6
C6	C5	O5	108.6	107.6
C6	C5	H5	107.5	107.7
C5	C6	O6	110.6	108.6
C5	C6	H61	111.8	110.0
C5	C6	H62	111.8	110.0
O5	C5	H5	111.3	109.4
O6	C6	H61	111.8	109.3
O6	C6	H62	111.8	109.3
C6	O6	HO6	110.6	107.1
H61	C6	H62	98.6	109.7
C8	C7	O7	122.1	119.6
C8	C7	N2	115.5	114.0
C7	C8	H81	110.0	112.5
C7	C8	H82	110.0	112.4
C7	C8	H83	115.5	115.4
O7	C7	N2	122.3	126.5
C7	N2	HN2	114.1	118.4
H81	C8	H82	100.2	105.3
H81	C8	H83	110.0	105.2
H82	C8	H83	110.0	105.2
C10	C9	C11	112.2	111.3
C10	C9	O3	114.2	108.4
C10	C9	H9	102.3	109.6
C9	C10	O11	120.8	124.8
C9	C10	OXT	119.0	112.2
C11	C9	O3	102.5	108.0
C11	C9	H9	114.1	111.3
C9	C11	H111	114.9	110.9
C9	C11	H112	114.9	110.6
C9	C11	H113	102.5	111.8
O3	C9	H9	112.0	108.0
O11	C10	OXT	120.2	123.0
C10	OXT	HX	109.5	115.2
H111	C11	H112	95.6	106.9
H111	C11	H113	114.9	108.0
H112	C11	H113	114.9	108.6
O1	C12	H121	111.2	109.6
O1	C12	H122	111.3	109.5
O1	C12	H123	112.1	109.0
H121	C12	H122	99.1	110.0
H121	C12	H123	111.3	109.4
H122	C12	H123	111.3	109.4

Torsion Angles for AMV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	120.6	119.7
O1	C1	C2	H1	240.2	241.8
C2	C1	O1	C12	156.0	180.0
O5	C1	C2	H1	119.5	122.0
C2	C1	O5	C5	307.4	297.6
C3	C2	C1	N2	232.7	237.3
C3	C2	C1	H2	116.3	121.3
C1	C2	C3	C4	302.2	311.8
C1	C2	C3	O3	199.2	192.4
C1	C2	C3	H3	71.0	74.7
N2	C2	C1	H2	243.6	244.0
C1	C2	N2	C7	127.6	118.7
C1	C2	N2	HN2	307.6	298.8
C2	C1	O1	O5	239.5	239.6
C2	C1	O1	H1	120.0	120.3
O1	C1	C2	C3	173.9	173.0
O1	C1	C2	N2	301.2	295.7
O1	C1	C2	H2	57.6	51.7
O5	C1	O1	H1	240.5	240.7
O1	C1	O5	C5	187.2	178.6
C1	O1	C12	H121	54.7	181.5
C1	O1	C12	H122	305.3	60.8
C1	O1	C12	H123	180.0	301.2
C2	C1	O5	O1	120.2	119.1
C2	C1	O5	H1	240.0	237.2
O5	C1	C2	C3	53.3	53.3
O5	C1	C2	N2	180.5	176.0
O5	C1	C2	H2	296.9	292.0
O1	C1	O5	H1	119.8	118.1
O5	C1	O1	C12	276.5	300.4
C4	C5	O5	C1	55.3	63.7
C6	C5	O5	C1	180.0	185.5
C1	O5	C5	H5	298.0	302.3
C2	C1	H1	O1	240.2	241.5
C2	C1	H1	O5	120.0	122.5
H1	C1	C2	C3	293.7	291.3
H1	C1	C2	N2	61.0	54.0
H1	C1	C2	H2	177.4	170.0
O1	C1	H1	O5	239.8	241.0
H1	C1	O1	C12	36.0	59.7
H1	C1	O5	C5	67.4	60.5
C3	C2	C1	O1	173.9	173.0
C3	C2	C1	O5	53.3	53.3
C3	C2	C1	H1	293.7	291.3
C1	C2	C3	N2	126.8	122.7
C1	C2	C3	H2	243.0	238.4
N2	C2	C3	H2	116.3	115.7
C3	C2	N2	C7	254.4	241.9
C3	C2	N2	HN2	74.4	61.9
C4	C3	C2	O3	103.0	119.4
C4	C3	C2	H3	231.2	237.1
C2	C3	C4	C5	59.5	49.6
C2	C3	C4	O4	176.6	170.1
C2	C3	C4	H4	298.3	287.8
O3	C3	C2	H3	128.2	117.7
C2	C3	O3	C9	227.8	269.6
N2	C2	C1	O1	301.2	295.7
N2	C2	C1	O5	180.5	176.0
N2	C2	C1	H1	61.0	54.0
C1	C2	N2	C3	233.2	236.8
C1	C2	N2	H2	117.0	118.7
C3	C2	N2	H2	243.8	241.9
N2	C2	C3	C4	175.4	189.1
N2	C2	C3	O3	72.4	69.7
N2	C2	C3	H3	304.2	311.9
C8	C7	N2	C2	169.0	179.9
O7	C7	N2	C2	348.6	0.0
C7	N2	C2	HN2	180.0	180.0
H2	C2	C1	O1	57.6	51.7
H2	C2	C1	O5	296.9	292.0
H2	C2	C1	H1	177.4	170.0
C1	C2	H2	C3	119.8	122.3
C1	C2	H2	N2	240.2	241.0
C3	C2	H2	N2	120.3	118.6
H2	C2	C3	C4	59.2	73.4
H2	C2	C3	O3	316.2	314.0
H2	C2	C3	H3	188.0	196.3
H2	C2	N2	C7	10.6	0.0
H2	C2	N2	HN2	190.6	180.0
C4	C3	C2	N2	175.4	189.1
C4	C3	C2	H2	59.2	73.4
C2	C3	C4	O3	248.6	239.7
C2	C3	C4	H3	122.7	123.6
O3	C3	C4	H3	234.2	243.9
C4	C3	O3	C9	117.8	147.9
C5	C4	C3	O4	242.9	239.5
C5	C4	C3	H4	121.2	121.8
C3	C4	C5	C6	180.6	184.7
C3	C4	C5	O5	302.4	303.9
C3	C4	C5	H5	62.8	64.7
O4	C4	C3	H4	238.3	242.2
C3	C4	O4	HO4	180.0	209.7
O3	C3	C2	N2	72.4	69.7
O3	C3	C2	H2	316.2	314.0
C2	C3	O3	C4	110.1	121.6
C2	C3	O3	H3	236.9	239.6
C4	C3	O3	H3	126.8	118.0
O3	C3	C4	C5	171.0	169.9
O3	C3	C4	O4	288.1	290.3
O3	C3	C4	H4	49.8	48.1
C10	C9	O3	C3	53.5	148.8
C11	C9	O3	C3	175.1	269.5
C3	O3	C9	H9	297.8	30.1
H3	C3	C2	N2	304.2	311.9
H3	C3	C2	H2	188.0	196.3
C2	C3	H3	C4	238.2	236.1
C2	C3	H3	O3	123.1	119.3
C4	C3	H3	O3	244.9	243.2
H3	C3	C4	C5	296.8	286.0
H3	C3	C4	O4	53.9	46.4
H3	C3	C4	H4	175.6	164.2
H3	C3	O3	C9	351.0	29.9
C1	O5	C5	C4	55.3	63.7
C5	C4	C3	O3	171.0	169.9
C5	C4	C3	H3	296.8	286.0
C3	C4	C5	O4	118.6	120.5
C3	C4	C5	H4	240.2	238.7
O4	C4	C5	H4	121.7	118.2
C5	C4	O4	HO4	299.1	330.9
C6	C5	C4	O5	238.2	240.8
C6	C5	C4	H5	117.8	120.0
C4	C5	C6	O6	182.5	179.5
C4	C5	C6	H61	57.2	60.0
C4	C5	C6	H62	307.7	299.1
O5	C5	C4	H5	239.6	239.2
O4	C4	C3	O3	288.1	290.3
O4	C4	C3	H3	53.9	46.4
C3	C4	O4	C5	240.8	238.7
C3	C4	O4	H4	119.7	118.9
C5	C4	O4	H4	238.9	240.2
O4	C4	C5	C6	62.1	64.2
O4	C4	C5	O5	183.9	183.4
O4	C4	C5	H5	304.3	304.2
H4	C4	C3	O3	49.8	48.1
H4	C4	C3	H3	175.6	164.2
C3	C4	H4	C5	120.9	122.0
C3	C4	H4	O4	239.7	241.2
C5	C4	H4	O4	118.9	119.2
H4	C4	C5	C6	300.4	306.0
H4	C4	C5	O5	62.2	65.2
H4	C4	C5	H5	182.6	186.0
H4	C4	O4	HO4	60.2	90.8
C1	O5	C5	C6	180.0	185.5
C6	C5	C4	O4	62.1	64.2
C6	C5	C4	H4	300.4	306.0
C4	C5	C6	O5	122.5	120.5
C4	C5	C6	H5	243.0	238.3
O5	C5	C6	H5	120.4	117.8
O6	C6	C5	H61	125.3	119.5
O6	C6	C5	H62	234.8	240.5
C5	C6	O6	HO6	180.0	284.8
H61	C6	C5	H62	109.5	120.9
C5	O5	C1	H1	67.4	60.5
O5	C5	C4	O4	183.9	183.4
O5	C5	C4	H4	62.2	65.2
C4	C5	O5	C6	235.3	238.2
C4	C5	O5	H5	117.2	121.5
C6	C5	O5	H5	241.9	243.2
O5	C5	C6	O6	59.9	59.1
O5	C5	C6	H61	294.7	299.5
O5	C5	C6	H62	185.2	178.6
H5	C5	C4	O4	304.3	304.2
H5	C5	C4	H4	182.6	186.0
C4	C5	H5	C6	121.7	122.4
C4	C5	H5	O5	240.5	239.1
C6	C5	H5	O5	118.8	116.7
H5	C5	C6	O6	299.5	301.2
H5	C5	C6	H61	174.2	181.7
H5	C5	C6	H62	64.7	60.8
O6	C6	C5	O5	59.9	59.1
O6	C6	C5	H5	299.5	301.2
C5	C6	O6	H61	234.7	240.0
C5	C6	O6	H62	125.2	120.0
H61	C6	O6	H62	250.5	240.0
H61	C6	C5	O5	294.7	299.5
H61	C6	C5	H5	174.2	181.7
C5	C6	H61	O6	124.6	119.1
C5	C6	H61	H62	242.3	238.9
O6	C6	H61	H62	117.7	119.8
H61	C6	O6	HO6	305.3	44.8
H62	C6	C5	O5	185.2	178.6
H62	C6	C5	H5	64.7	60.8
C5	C6	H62	O6	235.4	240.9
C5	C6	H62	H61	117.7	121.1
O6	C6	H62	H61	242.3	240.2
H62	C6	O6	HO6	54.8	164.8
C2	N2	C7	C8	169.0	179.9
O7	C7	C8	N2	180.4	179.9
C8	C7	N2	HN2	349.0	359.9
H81	C8	C7	H82	109.5	241.4
H81	C8	C7	H83	234.7	120.7
H82	C8	C7	H83	125.2	239.3
C2	N2	C7	O7	348.6	0.0
C8	C7	O7	N2	179.5	180.1
O7	C7	C8	H81	235.2	300.7
O7	C7	C8	H82	125.7	59.4
O7	C7	C8	H83	0.4	180.0
O7	C7	N2	HN2	168.6	180.0
C7	N2	C2	H2	10.6	0.0
C2	N2	C7	HN2	180.0	180.0
C8	C7	N2	O7	180.4	179.9
N2	C7	C8	H81	54.7	120.8
N2	C7	C8	H82	305.3	239.5
N2	C7	C8	H83	180.0	0.1
H81	C8	C7	O7	235.2	300.7
H81	C8	C7	N2	54.7	120.8
C7	C8	H81	H82	244.2	122.8
C7	C8	H81	H83	128.4	233.6
H82	C8	H81	H83	244.2	110.9
H82	C8	C7	O7	125.7	59.4
H82	C8	C7	N2	305.3	239.5
C7	C8	H82	H81	115.8	237.2
C7	C8	H82	H83	231.6	126.3
H81	C8	H82	H83	115.8	249.1
H83	C8	C7	O7	0.4	180.0
H83	C8	C7	N2	180.0	0.1
C7	C8	H83	H81	234.7	124.5
C7	C8	H83	H82	125.3	235.5
H81	C8	H83	H82	250.5	110.9
C3	O3	C9	C10	53.5	148.8
C11	C9	C10	O3	243.9	241.3
C11	C9	C10	H9	122.7	123.6
C10	C9	C11	H111	177.7	360.0
C10	C9	C11	H112	68.3	241.6
C10	C9	C11	H113	303.0	120.6
O3	C9	C10	H9	238.7	242.3
O11	C10	C9	OXT	179.6	181.0
C9	C10	OXT	HX	179.6	181.0
C3	O3	C9	C11	175.1	269.5
C10	C9	C11	O3	123.0	119.0
C10	C9	C11	H9	244.3	237.4
C11	C9	C10	O11	326.2	243.6
C11	C9	C10	OXT	146.6	62.6
O3	C9	C11	H9	121.3	118.4
H111	C11	C9	H112	109.5	118.4
H111	C11	C9	H113	234.7	239.4
H112	C11	C9	H113	125.3	121.1
C9	O3	C3	H3	351.0	29.9
C10	C9	O3	C11	238.4	239.2
C10	C9	O3	H9	115.7	118.7
O3	C9	C10	O11	82.3	2.3
O3	C9	C10	OXT	262.7	181.3
C11	C9	O3	H9	237.3	239.5
O3	C9	C11	H111	54.7	241.0
O3	C9	C11	H112	305.3	122.7
O3	C9	C11	H113	180.0	1.6
C10	C9	H9	C11	121.4	123.6
C10	C9	H9	O3	237.3	242.0
H9	C9	C10	O11	203.5	120.0
H9	C9	C10	OXT	23.9	299.0
C11	C9	H9	O3	115.9	118.5
H9	C9	C11	H111	293.4	122.6
H9	C9	C11	H112	183.9	4.3
H9	C9	C11	H113	58.7	243.2
O11	C10	C9	C11	326.2	243.6
O11	C10	C9	O3	82.3	2.3
O11	C10	C9	H9	203.5	120.0
C9	C10	O11	OXT	180.4	178.8
O11	C10	OXT	HX	0.0	360.0
OXT	C10	C9	C11	146.6	62.6
OXT	C10	C9	O3	262.7	181.3
OXT	C10	C9	H9	23.9	299.0
C9	C10	OXT	O11	179.6	181.0
H111	C11	C9	O3	54.7	241.0
H111	C11	C9	H9	293.4	122.6
C9	C11	H111	H112	239.3	239.4
C9	C11	H111	H113	118.5	122.8
H112	C11	H111	H113	239.3	243.4
H112	C11	C9	O3	305.3	122.7
H112	C11	C9	H9	183.9	4.3
C9	C11	H112	H111	120.8	120.8
C9	C11	H112	H113	241.5	237.0
H111	C11	H112	H113	120.7	116.2
H113	C11	C9	O3	180.0	1.6
H113	C11	C9	H9	58.7	243.2
C9	C11	H113	H111	234.7	237.7
C9	C11	H113	H112	125.3	122.2
H111	C11	H113	H112	250.5	244.5
C12	O1	C1	O5	276.5	300.4
C12	O1	C1	H1	36.0	59.7
H121	C12	O1	H122	109.5	120.8
H121	C12	O1	H123	234.8	240.4
H122	C12	O1	H123	125.3	119.6
HO4	O4	C4	H4	60.2	90.8
HO6	O6	C6	H61	305.3	44.8
HO6	O6	C6	H62	54.8	164.8
HN2	N2	C2	H2	190.6	180.0
C2	N2	HN2	C7	180.0	180.0
O1	C12	H121	H122	242.8	239.5
O1	C12	H121	H123	125.7	119.4
H122	C12	H121	H123	242.8	239.9
O1	C12	H122	H121	117.1	120.5
O1	C12	H122	H123	234.3	240.6
H121	C12	H122	H123	117.2	120.1
O1	C12	H123	H121	234.8	240.3
O1	C12	H123	H122	125.3	119.7
H121	C12	H123	H122	250.5	239.5