PDB Chemical Component AMU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AMU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.516	1.531
C1	O1	1.415	1.429
C1	O5	1.411	1.426
C1	H1	1.115	1.090
C2	C3	1.552	1.532
C2	N2	1.450	1.464
C2	H2	1.115	1.090
C3	C4	1.530	1.532
C3	O3	1.432	1.427
C3	H3	1.115	1.090
C4	C5	1.571	1.530
C4	O4	1.428	1.429
C4	H4	1.114	1.090
C5	C6	1.517	1.530
C5	O5	1.423	1.426
C5	H5	1.115	1.090
C6	O6	1.417	1.428
C6	H61	1.115	1.090
C6	H62	1.115	1.091
C7	C8	1.516	1.507
C7	O7	1.232	1.212
C7	N2	1.327	1.348
C8	H81	1.115	1.090
C8	H82	1.115	1.090
C8	H83	1.115	1.090
C9	C10	1.523	1.506
C9	C11	1.523	1.530
C9	O3	1.434	1.428
C9	H9	1.116	1.090
C10	O10	1.230	1.208
C10	O11	1.331	1.341
C11	H111	1.115	1.090
C11	H112	1.115	1.091
C11	H113	1.114	1.089
O1	HO1	0.951	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.966
O11	HO11	0.950	0.967
N2	HN2	1.020	0.971

Bond Angles for AMU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	106.5	109.4
C2	C1	O5	109.8	110.0
C2	C1	H1	111.3	109.3
C1	C2	C3	116.7	109.0
C1	C2	N2	107.5	109.5
C1	C2	H2	104.5	109.5
O1	C1	O5	109.7	109.4
O1	C1	H1	111.3	109.4
C1	O1	HO1	106.5	106.8
O5	C1	H1	108.2	109.3
C1	O5	C5	117.4	107.6
C3	C2	N2	104.5	109.9
C3	C2	H2	107.5	109.4
C2	C3	C4	108.1	108.8
C2	C3	O3	101.3	109.6
C2	C3	H3	116.7	109.6
N2	C2	H2	116.7	109.5
C2	N2	C7	127.5	120.0
C2	N2	HN2	121.4	120.0
C4	C3	O3	113.1	109.6
C4	C3	H3	105.7	109.6
C3	C4	C5	108.9	109.1
C3	C4	O4	112.3	109.6
C3	C4	H4	108.7	109.5
O3	C3	H3	112.0	109.6
C3	O3	C9	118.4	106.9
C5	C4	O4	111.6	109.6
C5	C4	H4	109.4	109.5
C4	C5	C6	113.1	109.5
C4	C5	O5	109.4	109.8
C4	C5	H5	106.3	109.4
O4	C4	H4	105.9	109.5
C4	O4	HO4	112.3	106.8
C6	C5	O5	107.1	109.4
C6	C5	H5	108.7	109.4
C5	C6	O6	108.3	109.5
C5	C6	H61	112.6	109.5
C5	C6	H62	112.7	109.4
O5	C5	H5	112.4	109.4
O6	C6	H61	112.7	109.5
O6	C6	H62	112.7	109.4
C6	O6	HO6	108.2	106.8
H61	C6	H62	97.8	109.4
C8	C7	O7	123.3	120.0
C8	C7	N2	113.6	120.0
C7	C8	H81	123.3	109.4
C7	C8	H82	107.3	109.4
C7	C8	H83	107.3	109.4
O7	C7	N2	123.2	120.0
C7	N2	HN2	111.1	120.0
H81	C8	H82	107.3	109.5
H81	C8	H83	107.3	109.5
H82	C8	H83	102.4	109.5
C10	C9	C11	111.3	109.5
C10	C9	O3	111.3	109.6
C10	C9	H9	108.4	109.4
C9	C10	O10	120.6	120.0
C9	C10	O11	115.9	120.1
C11	C9	O3	113.4	109.5
C11	C9	H9	106.1	109.4
C9	C11	H111	111.3	109.5
C9	C11	H112	111.5	109.4
C9	C11	H113	111.5	109.5
O3	C9	H9	106.0	109.4
O10	C10	O11	123.4	119.9
C10	O11	HO11	115.9	120.1
H111	C11	H112	111.5	109.5
H111	C11	H113	111.6	109.5
H112	C11	H113	98.9	109.5

Torsion Angles for AMU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	118.7	120.2
O1	C1	C2	H1	238.5	240.2
C2	C1	O1	HO1	179.9	179.5
O5	C1	C2	H1	119.8	120.0
C2	C1	O5	C5	307.1	292.6
C3	C2	C1	N2	243.1	239.7
C3	C2	C1	H2	118.5	119.6
C1	C2	C3	C4	311.1	306.6
C1	C2	C3	O3	191.9	186.7
C1	C2	C3	H3	70.0	66.4
N2	C2	C1	H2	235.4	239.9
C1	C2	N2	C7	118.1	89.9
C1	C2	N2	HN2	298.2	270.0
C2	C1	O1	O5	241.2	239.5
C2	C1	O1	H1	121.5	119.7
O1	C1	C2	C3	164.8	181.1
O1	C1	C2	N2	281.8	301.4
O1	C1	C2	H2	46.4	61.5
O5	C1	O1	H1	240.3	240.2
O1	C1	O5	C5	190.4	172.4
C2	C1	O5	O1	116.7	120.2
C2	C1	O5	H1	238.3	240.0
O5	C1	C2	C3	46.1	61.0
O5	C1	C2	N2	163.0	181.2
O5	C1	C2	H2	287.6	301.3
O1	C1	O5	H1	121.6	119.8
O5	C1	O1	HO1	298.7	300.0
C4	C5	O5	C1	61.2	67.5
C6	C5	O5	C1	184.1	187.7
C1	O5	C5	H5	303.4	307.5
C2	C1	H1	O1	241.4	240.2
C2	C1	H1	O5	120.7	120.4
H1	C1	C2	C3	286.3	300.9
H1	C1	C2	N2	43.3	61.2
H1	C1	C2	H2	167.8	181.3
O1	C1	H1	O5	239.3	240.2
H1	C1	O1	HO1	58.5	59.8
H1	C1	O5	C5	68.7	52.5
C3	C2	C1	O1	164.8	181.1
C3	C2	C1	O5	46.1	61.0
C3	C2	C1	H1	286.3	300.9
C1	C2	C3	N2	118.5	120.0
C1	C2	C3	H2	243.2	240.3
N2	C2	C3	H2	124.6	120.3
C3	C2	N2	C7	242.8	209.6
C3	C2	N2	HN2	62.8	29.7
C4	C3	C2	O3	119.2	119.9
C4	C3	C2	H3	241.1	240.2
C2	C3	C4	C5	53.1	53.6
C2	C3	C4	O4	177.1	173.6
C2	C3	C4	H4	294.0	293.8
O3	C3	C2	H3	121.9	120.3
C2	C3	O3	C9	255.3	258.3
N2	C2	C1	O1	281.8	301.4
N2	C2	C1	O5	163.0	181.2
N2	C2	C1	H1	43.3	61.2
C1	C2	N2	C3	235.3	240.3
C1	C2	N2	H2	116.8	120.1
C3	C2	N2	H2	241.5	239.8
N2	C2	C3	C4	192.6	186.5
N2	C2	C3	O3	73.4	66.6
N2	C2	C3	H3	311.5	306.3
C8	C7	N2	C2	179.9	180.0
O7	C7	N2	C2	1.1	0.0
C7	N2	C2	HN2	180.0	179.9
H2	C2	C1	O1	46.4	61.5
H2	C2	C1	O5	287.6	301.3
H2	C2	C1	H1	167.8	181.3
C1	C2	H2	C3	124.6	119.4
C1	C2	H2	N2	241.5	239.9
C3	C2	H2	N2	116.9	120.5
H2	C2	C3	C4	67.9	66.3
H2	C2	C3	O3	308.8	306.4
H2	C2	C3	H3	186.8	186.1
H2	C2	N2	C7	1.3	329.8
H2	C2	N2	HN2	181.3	149.9
C4	C3	C2	N2	192.6	186.5
C4	C3	C2	H2	67.9	66.3
C2	C3	C4	O3	248.6	240.1
C2	C3	C4	H3	125.7	119.8
O3	C3	C4	H3	237.1	239.7
C4	C3	O3	C9	139.8	138.9
C5	C4	C3	O4	236.0	240.0
C5	C4	C3	H4	119.1	119.8
C3	C4	C5	C6	181.1	178.7
C3	C4	C5	O5	300.3	298.8
C3	C4	C5	H5	61.9	58.9
O4	C4	C3	H4	243.2	239.8
C3	C4	O4	HO4	180.0	180.0
O3	C3	C2	N2	73.4	66.6
O3	C3	C2	H2	308.8	306.4
C2	C3	O3	C4	115.5	119.4
C2	C3	O3	H3	234.9	239.7
C4	C3	O3	H3	119.4	120.3
O3	C3	C4	C5	164.5	173.5
O3	C3	C4	O4	288.5	293.5
O3	C3	C4	H4	45.3	53.6
C10	C9	O3	C3	149.5	150.0
C11	C9	O3	C3	275.9	270.0
C3	O3	C9	H9	31.9	30.0
H3	C3	C2	N2	311.5	306.3
H3	C3	C2	H2	186.8	186.1
C2	C3	H3	C4	239.8	240.7
C2	C3	H3	O3	116.1	120.3
C4	C3	H3	O3	236.4	239.7
H3	C3	C4	C5	287.4	293.8
H3	C3	C4	O4	51.4	53.8
H3	C3	C4	H4	168.3	173.9
H3	C3	O3	C9	20.5	18.6
C1	O5	C5	C4	61.2	67.5
C5	C4	C3	O3	164.5	173.5
C5	C4	C3	H3	287.4	293.8
C3	C4	C5	O4	124.5	120.0
C3	C4	C5	H4	241.3	240.1
O4	C4	C5	H4	116.9	120.2
C5	C4	O4	HO4	302.6	299.6
C6	C5	C4	O5	240.8	239.9
C6	C5	C4	H5	119.2	119.8
C4	C5	C6	O6	78.1	180.0
C4	C5	C6	H61	203.4	300.1
C4	C5	C6	H62	312.9	60.0
O5	C5	C4	H5	238.4	239.9
O4	C4	C3	O3	288.5	293.5
O4	C4	C3	H3	51.4	53.8
C3	C4	O4	C5	237.5	240.3
C3	C4	O4	H4	118.5	120.2
C5	C4	O4	H4	241.0	239.8
O4	C4	C5	C6	56.6	58.7
O4	C4	C5	O5	175.9	178.8
O4	C4	C5	H5	297.4	298.9
H4	C4	C3	O3	45.3	53.6
H4	C4	C3	H3	168.3	173.9
C3	C4	H4	C5	118.8	119.6
C3	C4	H4	O4	239.2	239.8
C5	C4	H4	O4	120.4	120.2
H4	C4	C5	C6	299.8	298.6
H4	C4	C5	O5	59.0	58.7
H4	C4	C5	H5	180.6	178.7
H4	C4	O4	HO4	61.6	59.8
C1	O5	C5	C6	184.1	187.7
C6	C5	C4	O4	56.6	58.7
C6	C5	C4	H4	299.8	298.6
C4	C5	C6	O5	120.5	120.4
C4	C5	C6	H5	242.2	240.2
O5	C5	C6	H5	121.6	119.8
O6	C6	C5	H61	234.8	239.9
O6	C6	C5	H62	125.3	120.0
C5	C6	O6	HO6	179.9	180.0
H61	C6	C5	H62	250.5	240.1
C5	O5	C1	H1	68.7	52.5
O5	C5	C4	O4	175.9	178.8
O5	C5	C4	H4	59.0	58.7
C4	C5	O5	C6	237.1	239.8
C4	C5	O5	H5	117.9	120.1
C6	C5	O5	H5	240.7	240.2
O5	C5	C6	O6	317.6	59.6
O5	C5	C6	H61	82.8	179.7
O5	C5	C6	H62	192.3	299.6
H5	C5	C4	O4	297.4	298.9
H5	C5	C4	H4	180.6	178.7
C4	C5	H5	C6	122.0	119.9
C4	C5	H5	O5	240.4	239.7
C6	C5	H5	O5	118.3	119.8
H5	C5	C6	O6	196.0	299.8
H5	C5	C6	H61	321.2	59.9
H5	C5	C6	H62	70.7	179.8
O6	C6	C5	O5	317.6	59.6
O6	C6	C5	H5	196.0	299.8
C5	C6	O6	H61	125.2	120.1
C5	C6	O6	H62	234.7	240.1
H61	C6	O6	H62	109.5	120.0
H61	C6	C5	O5	82.8	179.7
H61	C6	C5	H5	321.2	59.9
C5	C6	H61	O6	237.2	239.9
C5	C6	H61	H62	118.6	119.9
O6	C6	H61	H62	241.4	240.0
H61	C6	O6	HO6	54.7	59.9
H62	C6	C5	O5	192.3	299.6
H62	C6	C5	H5	70.7	179.8
C5	C6	H62	O6	122.8	120.0
C5	C6	H62	H61	241.4	240.1
O6	C6	H62	H61	118.6	120.1
H62	C6	O6	HO6	305.2	299.9
C2	N2	C7	C8	179.9	180.0
O7	C7	C8	N2	178.8	180.0
C8	C7	N2	HN2	359.8	359.9
H81	C8	C7	H82	234.8	240.1
H81	C8	C7	H83	125.3	120.0
H82	C8	C7	H83	250.5	240.0
C2	N2	C7	O7	1.1	0.0
C8	C7	O7	N2	181.4	180.0
O7	C7	C8	H81	180.0	0.0
O7	C7	C8	H82	305.2	120.0
O7	C7	C8	H83	54.7	240.0
O7	C7	N2	HN2	181.1	180.0
C7	N2	C2	H2	1.3	329.8
C2	N2	C7	HN2	180.0	180.1
C8	C7	N2	O7	178.8	180.0
N2	C7	C8	H81	1.3	180.1
N2	C7	C8	H82	126.5	300.0
N2	C7	C8	H83	236.0	60.0
H81	C8	C7	O7	180.0	0.0
H81	C8	C7	N2	1.3	180.1
C7	C8	H81	H82	125.2	119.9
C7	C8	H81	H83	234.7	240.0
H82	C8	H81	H83	109.5	120.1
H82	C8	C7	O7	305.2	120.0
H82	C8	C7	N2	126.5	300.0
C7	C8	H82	H81	225.7	240.1
C7	C8	H82	H83	112.9	120.0
H81	C8	H82	H83	247.2	239.9
H83	C8	C7	O7	54.7	240.0
H83	C8	C7	N2	236.0	60.0
C7	C8	H83	H81	134.4	120.0
C7	C8	H83	H82	247.2	240.0
H81	C8	H83	H82	112.8	120.0
C3	O3	C9	C10	149.5	150.0
C11	C9	C10	O3	232.4	239.9
C11	C9	C10	H9	116.3	119.9
C10	C9	C11	H111	180.0	59.2
C10	C9	C11	H112	305.2	179.2
C10	C9	C11	H113	54.7	299.2
O3	C9	C10	H9	243.8	240.0
O10	C10	C9	O11	183.1	180.0
C9	C10	O11	HO11	180.0	180.0
C3	O3	C9	C11	275.9	270.0
C10	C9	C11	O3	126.4	120.1
C10	C9	C11	H9	242.3	240.1
C11	C9	C10	O10	58.9	240.0
C11	C9	C10	O11	235.8	60.0
O3	C9	C11	H9	115.9	119.9
H111	C11	C9	H112	234.8	240.0
H111	C11	C9	H113	125.3	120.0
H112	C11	C9	H113	250.5	240.0
C9	O3	C3	H3	20.5	18.6
C10	C9	O3	C11	233.6	239.9
C10	C9	O3	H9	117.6	120.0
O3	C9	C10	O10	186.5	0.1
O3	C9	C10	O11	3.3	180.0
C11	C9	O3	H9	244.0	240.1
O3	C9	C11	H111	53.6	299.1
O3	C9	C11	H112	178.8	59.0
O3	C9	C11	H113	288.3	179.1
C10	C9	H9	C11	119.6	120.0
C10	C9	H9	O3	240.4	239.9
H9	C9	C10	O10	302.6	120.0
H9	C9	C10	O11	119.5	300.0
C11	C9	H9	O3	120.8	120.0
H9	C9	C11	H111	297.7	179.1
H9	C9	C11	H112	62.9	299.1
H9	C9	C11	H113	172.4	59.1
O10	C10	C9	C11	58.9	240.0
O10	C10	C9	O3	186.5	0.1
O10	C10	C9	H9	302.6	120.0
C9	C10	O10	O11	176.6	180.0
O10	C10	O11	HO11	356.8	0.0
O11	C10	C9	C11	235.8	60.0
O11	C10	C9	O3	3.3	180.0
O11	C10	C9	H9	119.5	300.0
C9	C10	O11	O10	183.2	180.0
H111	C11	C9	O3	53.6	299.1
H111	C11	C9	H9	297.7	179.1
C9	C11	H111	H112	125.2	120.0
C9	C11	H111	H113	234.7	240.0
H112	C11	H111	H113	109.6	120.0
H112	C11	C9	O3	178.8	59.0
H112	C11	C9	H9	62.9	299.1
C9	C11	H112	H111	234.9	240.0
C9	C11	H112	H113	117.4	120.0
H111	C11	H112	H113	242.5	240.0
H113	C11	C9	O3	288.3	179.1
H113	C11	C9	H9	172.4	59.1
C9	C11	H113	H111	125.1	120.0
C9	C11	H113	H112	242.6	240.0
H111	C11	H113	H112	117.4	120.0
HO1	O1	C1	O5	298.7	300.0
HO1	O1	C1	H1	58.5	59.8
HO4	O4	C4	H4	61.6	59.8
HO6	O6	C6	H61	54.7	59.9
HO6	O6	C6	H62	305.2	299.9
HN2	N2	C2	H2	181.3	149.9
C2	N2	HN2	C7	180.0	179.9