PDB Chemical Component AMQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AMQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.500 |
1.469 |
| N |
H |
1.020 |
1.009 |
| N |
HN2 |
1.019 |
1.009 |
| CA |
C |
1.547 |
1.507 |
| CA |
CB |
1.552 |
1.529 |
| CA |
HA |
1.116 |
1.090 |
| C |
OT1 |
1.249 |
1.207 |
| C |
OT2 |
1.253 |
1.342 |
| OT2 |
HXT |
0.949 |
0.966 |
| CB |
CG |
1.517 |
1.506 |
| CB |
HB1 |
1.114 |
1.090 |
| CB |
HB2 |
1.116 |
1.089 |
| CG |
CD1 |
1.432 |
1.418 |
| CG |
CD2 |
1.364 |
1.353 |
| CD1 |
OE1 |
1.335 |
1.358 |
| CD1 |
NE1 |
1.311 |
1.306 |
| CD2 |
CE2 |
1.500 |
1.506 |
| CD2 |
OE2 |
1.388 |
1.341 |
| CE2 |
HE21 |
1.115 |
1.090 |
| CE2 |
HE22 |
1.114 |
1.090 |
| CE2 |
HE23 |
1.115 |
1.090 |
| OE1 |
HE1 |
0.951 |
0.966 |
| NE1 |
OE2 |
1.449 |
1.208 |
Bond Angles for AMQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
108.2 |
106.7 |
| CA |
N |
HN2 |
112.6 |
106.8 |
| N |
CA |
C |
108.2 |
109.5 |
| N |
CA |
CB |
109.9 |
109.4 |
| N |
CA |
HA |
111.0 |
109.4 |
| H |
N |
HN2 |
112.7 |
106.7 |
| C |
CA |
CB |
112.1 |
109.5 |
| C |
CA |
HA |
108.7 |
109.5 |
| CA |
C |
OT1 |
118.0 |
120.0 |
| CA |
C |
OT2 |
116.6 |
120.0 |
| CB |
CA |
HA |
107.0 |
109.5 |
| CA |
CB |
CG |
113.8 |
109.5 |
| CA |
CB |
HB1 |
110.7 |
109.4 |
| CA |
CB |
HB2 |
110.7 |
109.5 |
| OT1 |
C |
OT2 |
125.3 |
120.0 |
| C |
OT2 |
HXT |
116.6 |
120.0 |
| CG |
CB |
HB1 |
110.6 |
109.5 |
| CG |
CB |
HB2 |
110.6 |
109.5 |
| CB |
CG |
CD1 |
128.0 |
128.0 |
| CB |
CG |
CD2 |
131.2 |
128.0 |
| HB1 |
CB |
HB2 |
99.7 |
109.4 |
| CD1 |
CG |
CD2 |
100.8 |
103.9 |
| CG |
CD1 |
OE1 |
117.0 |
126.9 |
| CG |
CD1 |
NE1 |
118.4 |
106.3 |
| CG |
CD2 |
CE2 |
134.4 |
126.7 |
| CG |
CD2 |
OE2 |
110.7 |
106.6 |
| OE1 |
CD1 |
NE1 |
124.5 |
126.8 |
| CD1 |
OE1 |
HE1 |
117.0 |
106.8 |
| CD1 |
NE1 |
OE2 |
100.5 |
111.5 |
| CE2 |
CD2 |
OE2 |
114.7 |
126.7 |
| CD2 |
CE2 |
HE21 |
134.4 |
109.5 |
| CD2 |
CE2 |
HE22 |
103.6 |
109.5 |
| CD2 |
CE2 |
HE23 |
103.6 |
109.5 |
| CD2 |
OE2 |
NE1 |
109.6 |
111.7 |
| HE21 |
CE2 |
HE22 |
103.7 |
109.4 |
| HE21 |
CE2 |
HE23 |
103.7 |
109.5 |
| HE22 |
CE2 |
HE23 |
105.0 |
109.4 |
Torsion Angles for AMQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
HN2 |
125.3 |
246.2 |
| C |
CA |
N |
CB |
122.7 |
120.0 |
| C |
CA |
N |
HA |
240.8 |
240.0 |
| N |
CA |
C |
OT1 |
185.2 |
330.0 |
| N |
CA |
C |
OT2 |
8.0 |
150.0 |
| CB |
CA |
N |
HA |
118.1 |
120.0 |
| N |
CA |
CB |
CG |
297.0 |
300.0 |
| N |
CA |
CB |
HB1 |
62.3 |
180.0 |
| N |
CA |
CB |
HB2 |
171.8 |
60.1 |
| CA |
N |
H |
HN2 |
234.8 |
113.8 |
| H |
N |
CA |
C |
180.0 |
60.0 |
| H |
N |
CA |
CB |
57.4 |
300.0 |
| H |
N |
CA |
HA |
299.3 |
180.0 |
| CA |
N |
HN2 |
H |
122.8 |
246.2 |
| HN2 |
N |
CA |
C |
54.7 |
173.8 |
| HN2 |
N |
CA |
CB |
292.1 |
53.8 |
| HN2 |
N |
CA |
HA |
174.0 |
293.8 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
HN2 |
54.7 |
173.8 |
| N |
CA |
C |
CB |
238.7 |
240.0 |
| N |
CA |
C |
HA |
120.6 |
120.0 |
| CB |
CA |
C |
HA |
242.0 |
240.0 |
| C |
CA |
CB |
CG |
176.7 |
180.0 |
| C |
CA |
CB |
HB1 |
301.9 |
60.0 |
| C |
CA |
CB |
HB2 |
51.4 |
300.1 |
| OT1 |
C |
CA |
OT2 |
177.2 |
180.1 |
| CA |
C |
OT2 |
HXT |
179.9 |
180.0 |
| CB |
CA |
N |
H |
57.4 |
300.0 |
| CB |
CA |
N |
HN2 |
292.1 |
53.8 |
| N |
CA |
CB |
C |
120.4 |
120.0 |
| N |
CA |
CB |
HA |
239.5 |
240.1 |
| C |
CA |
CB |
HA |
119.1 |
120.1 |
| CB |
CA |
C |
OT1 |
306.6 |
90.0 |
| CB |
CA |
C |
OT2 |
129.3 |
270.0 |
| CG |
CB |
CA |
HB1 |
234.7 |
120.0 |
| CG |
CB |
CA |
HB2 |
125.2 |
239.9 |
| CA |
CB |
CG |
CD1 |
272.6 |
90.0 |
| CA |
CB |
CG |
CD2 |
88.8 |
269.5 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
119.9 |
| HA |
CA |
N |
H |
299.3 |
180.0 |
| HA |
CA |
N |
HN2 |
174.0 |
293.8 |
| N |
CA |
HA |
C |
241.1 |
240.0 |
| N |
CA |
HA |
CB |
119.9 |
119.9 |
| C |
CA |
HA |
CB |
238.8 |
239.9 |
| HA |
CA |
C |
OT1 |
64.6 |
210.1 |
| HA |
CA |
C |
OT2 |
247.4 |
30.0 |
| HA |
CA |
CB |
CG |
57.6 |
60.0 |
| HA |
CA |
CB |
HB1 |
182.8 |
300.0 |
| HA |
CA |
CB |
HB2 |
292.3 |
180.0 |
| OT1 |
C |
CA |
CB |
306.6 |
90.0 |
| OT1 |
C |
CA |
HA |
64.6 |
210.1 |
| CA |
C |
OT1 |
OT2 |
183.0 |
179.9 |
| OT1 |
C |
OT2 |
HXT |
2.9 |
359.9 |
| OT2 |
C |
CA |
CB |
129.3 |
270.0 |
| OT2 |
C |
CA |
HA |
247.4 |
30.0 |
| CA |
C |
OT2 |
OT1 |
177.0 |
180.1 |
| CG |
CB |
CA |
HA |
57.6 |
60.0 |
| CA |
CB |
CG |
HB1 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB2 |
234.7 |
120.0 |
| HB1 |
CB |
CG |
HB2 |
109.4 |
240.0 |
| CD1 |
CG |
CB |
CD2 |
183.9 |
180.4 |
| CB |
CG |
CD1 |
OE1 |
359.5 |
359.8 |
| CB |
CG |
CD1 |
NE1 |
177.7 |
180.0 |
| CB |
CG |
CD2 |
CE2 |
357.0 |
0.2 |
| CB |
CG |
CD2 |
OE2 |
182.5 |
180.0 |
| HB1 |
CB |
CA |
HA |
182.8 |
300.0 |
| CA |
CB |
HB1 |
CG |
233.0 |
120.0 |
| CA |
CB |
HB1 |
HB2 |
116.5 |
240.0 |
| CG |
CB |
HB1 |
HB2 |
243.6 |
120.0 |
| HB1 |
CB |
CG |
CD1 |
147.4 |
209.9 |
| HB1 |
CB |
CG |
CD2 |
323.5 |
29.5 |
| HB2 |
CB |
CA |
HA |
292.3 |
180.0 |
| CA |
CB |
HB2 |
CG |
127.0 |
239.9 |
| CA |
CB |
HB2 |
HB1 |
243.5 |
119.9 |
| CG |
CB |
HB2 |
HB1 |
116.5 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
37.9 |
329.9 |
| HB2 |
CB |
CG |
CD2 |
214.1 |
149.5 |
| CD1 |
CG |
CB |
HB1 |
147.4 |
209.9 |
| CD1 |
CG |
CB |
HB2 |
37.9 |
329.9 |
| CB |
CG |
CD1 |
CD2 |
177.0 |
179.6 |
| CD1 |
CG |
CD2 |
CE2 |
174.0 |
179.9 |
| CD1 |
CG |
CD2 |
OE2 |
359.4 |
359.6 |
| OE1 |
CD1 |
CG |
NE1 |
181.7 |
179.8 |
| CG |
CD1 |
OE1 |
HE1 |
180.0 |
270.3 |
| CG |
CD1 |
NE1 |
OE2 |
359.6 |
359.8 |
| CD2 |
CG |
CB |
HB1 |
323.5 |
29.5 |
| CD2 |
CG |
CB |
HB2 |
214.1 |
149.5 |
| CB |
CG |
CD2 |
CD1 |
183.1 |
180.4 |
| CD2 |
CG |
CD1 |
OE1 |
182.4 |
180.2 |
| CD2 |
CG |
CD1 |
NE1 |
0.7 |
0.4 |
| CE2 |
CD2 |
CG |
OE2 |
174.6 |
180.3 |
| CG |
CD2 |
CE2 |
HE21 |
180.0 |
179.7 |
| CG |
CD2 |
CE2 |
HE22 |
305.3 |
299.7 |
| CG |
CD2 |
CE2 |
HE23 |
54.7 |
59.7 |
| CG |
CD2 |
OE2 |
NE1 |
0.4 |
0.3 |
| OE1 |
CD1 |
CG |
CD2 |
182.4 |
180.2 |
| CG |
CD1 |
OE1 |
NE1 |
178.2 |
180.2 |
| OE1 |
CD1 |
NE1 |
OE2 |
177.7 |
180.0 |
| NE1 |
CD1 |
CG |
CD2 |
0.7 |
0.4 |
| CG |
CD1 |
NE1 |
OE1 |
181.9 |
179.8 |
| NE1 |
CD1 |
OE1 |
HE1 |
1.9 |
90.1 |
| CD2 |
OE2 |
NE1 |
CD1 |
0.0 |
360.0 |
| CG |
CD2 |
CE2 |
OE2 |
185.6 |
179.7 |
| CE2 |
CD2 |
OE2 |
NE1 |
184.7 |
180.0 |
| HE21 |
CE2 |
CD2 |
HE22 |
234.7 |
240.0 |
| HE21 |
CE2 |
CD2 |
HE23 |
125.3 |
120.0 |
| HE22 |
CE2 |
CD2 |
HE23 |
250.5 |
240.1 |
| CG |
CD2 |
OE2 |
CE2 |
175.7 |
180.3 |
| CD1 |
NE1 |
OE2 |
CD2 |
0.0 |
360.0 |
| OE2 |
CD2 |
CE2 |
HE21 |
354.4 |
0.0 |
| OE2 |
CD2 |
CE2 |
HE22 |
119.7 |
120.0 |
| OE2 |
CD2 |
CE2 |
HE23 |
229.1 |
240.0 |
| HE21 |
CE2 |
CD2 |
OE2 |
354.4 |
0.0 |
| CD2 |
CE2 |
HE21 |
HE22 |
125.2 |
120.1 |
| CD2 |
CE2 |
HE21 |
HE23 |
234.8 |
240.0 |
| HE22 |
CE2 |
HE21 |
HE23 |
109.5 |
119.9 |
| HE22 |
CE2 |
CD2 |
OE2 |
119.7 |
120.0 |
| CD2 |
CE2 |
HE22 |
HE21 |
216.9 |
240.0 |
| CD2 |
CE2 |
HE22 |
HE23 |
108.4 |
120.0 |
| HE21 |
CE2 |
HE22 |
HE23 |
251.5 |
240.0 |
| HE23 |
CE2 |
CD2 |
OE2 |
229.1 |
240.0 |
| CD2 |
CE2 |
HE23 |
HE21 |
143.1 |
120.0 |
| CD2 |
CE2 |
HE23 |
HE22 |
251.6 |
240.0 |
| HE21 |
CE2 |
HE23 |
HE22 |
108.5 |
119.9 |
| HE1 |
OE1 |
CD1 |
NE1 |
1.9 |
90.1 |