PDB Chemical Component AML
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AML
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.528 |
1.529 |
C1 |
HC11 |
1.115 |
1.089 |
C1 |
HC12 |
1.114 |
1.091 |
C1 |
HC13 |
1.116 |
1.089 |
C2 |
C3 |
1.521 |
1.530 |
C2 |
HC21 |
1.114 |
1.089 |
C2 |
HC22 |
1.115 |
1.090 |
C3 |
C4 |
1.518 |
1.528 |
C3 |
HC31 |
1.114 |
1.089 |
C3 |
HC32 |
1.116 |
1.090 |
C4 |
C5 |
1.516 |
1.529 |
C4 |
HC41 |
1.115 |
1.089 |
C4 |
HC42 |
1.115 |
1.091 |
C5 |
N1 |
1.479 |
1.469 |
C5 |
HC51 |
1.114 |
1.090 |
C5 |
HC52 |
1.115 |
1.090 |
N1 |
HN11 |
1.021 |
1.008 |
N1 |
HN12 |
1.019 |
1.008 |
Bond Angles for AML
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
HC11 |
114.0 |
109.6 |
C2 |
C1 |
HC12 |
110.5 |
109.4 |
C2 |
C1 |
HC13 |
110.5 |
109.5 |
C1 |
C2 |
C3 |
114.1 |
109.5 |
C1 |
C2 |
HC21 |
110.5 |
109.5 |
C1 |
C2 |
HC22 |
110.5 |
109.4 |
HC11 |
C1 |
HC12 |
110.6 |
109.4 |
HC11 |
C1 |
HC13 |
110.5 |
109.5 |
HC12 |
C1 |
HC13 |
99.7 |
109.4 |
C3 |
C2 |
HC21 |
110.5 |
109.6 |
C3 |
C2 |
HC22 |
110.5 |
109.4 |
C2 |
C3 |
C4 |
111.2 |
109.5 |
C2 |
C3 |
HC31 |
111.6 |
109.5 |
C2 |
C3 |
HC32 |
111.6 |
109.4 |
HC21 |
C2 |
HC22 |
99.7 |
109.5 |
C4 |
C3 |
HC31 |
111.5 |
109.5 |
C4 |
C3 |
HC32 |
111.6 |
109.4 |
C3 |
C4 |
C5 |
111.7 |
109.5 |
C3 |
C4 |
HC41 |
111.4 |
109.6 |
C3 |
C4 |
HC42 |
111.4 |
109.5 |
HC31 |
C3 |
HC32 |
98.8 |
109.5 |
C5 |
C4 |
HC41 |
111.4 |
109.5 |
C5 |
C4 |
HC42 |
111.4 |
109.4 |
C4 |
C5 |
N1 |
109.9 |
109.6 |
C4 |
C5 |
HC51 |
112.1 |
109.5 |
C4 |
C5 |
HC52 |
112.0 |
109.5 |
HC41 |
C4 |
HC42 |
98.9 |
109.4 |
N1 |
C5 |
HC51 |
112.0 |
109.4 |
N1 |
C5 |
HC52 |
112.0 |
109.5 |
C5 |
N1 |
HN11 |
110.0 |
106.8 |
C5 |
N1 |
HN12 |
112.1 |
106.7 |
HC51 |
C5 |
HC52 |
98.4 |
109.4 |
HN11 |
N1 |
HN12 |
112.0 |
106.7 |
Torsion Angles for AML
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HC11 |
C1 |
C2 |
HC12 |
234.6 |
240.1 |
HC11 |
C1 |
C2 |
HC13 |
125.2 |
120.1 |
HC12 |
C1 |
C2 |
HC13 |
250.6 |
240.1 |
C3 |
C2 |
C1 |
HC21 |
234.7 |
239.8 |
C3 |
C2 |
C1 |
HC22 |
125.2 |
119.9 |
C1 |
C2 |
C3 |
C4 |
309.2 |
180.0 |
C1 |
C2 |
C3 |
HC31 |
74.4 |
300.1 |
C1 |
C2 |
C3 |
HC32 |
183.9 |
60.1 |
HC21 |
C2 |
C1 |
HC22 |
250.5 |
240.0 |
C2 |
C1 |
HC11 |
HC12 |
125.3 |
119.9 |
C2 |
C1 |
HC11 |
HC13 |
234.8 |
239.9 |
HC11 |
C1 |
C2 |
C3 |
179.9 |
180.0 |
HC11 |
C1 |
C2 |
HC21 |
305.2 |
300.1 |
HC11 |
C1 |
C2 |
HC22 |
54.7 |
60.1 |
HC12 |
C1 |
HC11 |
HC13 |
109.5 |
119.9 |
C2 |
C1 |
HC12 |
HC11 |
232.7 |
240.0 |
C2 |
C1 |
HC12 |
HC13 |
116.3 |
120.0 |
HC12 |
C1 |
C2 |
C3 |
305.3 |
299.9 |
HC12 |
C1 |
C2 |
HC21 |
70.6 |
60.1 |
HC12 |
C1 |
C2 |
HC22 |
180.1 |
180.0 |
HC11 |
C1 |
HC12 |
HC13 |
243.6 |
240.0 |
C2 |
C1 |
HC13 |
HC11 |
127.2 |
120.2 |
C2 |
C1 |
HC13 |
HC12 |
243.7 |
240.1 |
HC13 |
C1 |
C2 |
C3 |
54.7 |
59.8 |
HC13 |
C1 |
C2 |
HC21 |
180.0 |
180.0 |
HC13 |
C1 |
C2 |
HC22 |
289.5 |
300.0 |
HC11 |
C1 |
HC13 |
HC12 |
116.5 |
119.9 |
C3 |
C2 |
C1 |
HC11 |
179.9 |
180.0 |
C3 |
C2 |
C1 |
HC12 |
305.3 |
299.9 |
C3 |
C2 |
C1 |
HC13 |
54.7 |
59.8 |
C1 |
C2 |
C3 |
HC21 |
125.3 |
120.1 |
C1 |
C2 |
C3 |
HC22 |
234.8 |
240.1 |
HC21 |
C2 |
C3 |
HC22 |
109.5 |
120.0 |
C4 |
C3 |
C2 |
HC31 |
234.7 |
239.9 |
C4 |
C3 |
C2 |
HC32 |
125.2 |
119.9 |
C2 |
C3 |
C4 |
C5 |
185.0 |
180.0 |
C2 |
C3 |
C4 |
HC41 |
310.3 |
300.1 |
C2 |
C3 |
C4 |
HC42 |
59.7 |
60.1 |
HC31 |
C3 |
C2 |
HC32 |
250.5 |
240.0 |
HC21 |
C2 |
C1 |
HC11 |
305.2 |
300.1 |
HC21 |
C2 |
C1 |
HC12 |
70.6 |
60.1 |
HC21 |
C2 |
C1 |
HC13 |
180.0 |
180.0 |
C1 |
C2 |
HC21 |
C3 |
232.8 |
239.9 |
C1 |
C2 |
HC21 |
HC22 |
116.4 |
119.9 |
C3 |
C2 |
HC21 |
HC22 |
243.6 |
240.0 |
HC21 |
C2 |
C3 |
C4 |
183.9 |
59.9 |
HC21 |
C2 |
C3 |
HC31 |
309.1 |
180.0 |
HC21 |
C2 |
C3 |
HC32 |
58.6 |
300.0 |
HC22 |
C2 |
C1 |
HC11 |
54.7 |
60.1 |
HC22 |
C2 |
C1 |
HC12 |
180.1 |
180.0 |
HC22 |
C2 |
C1 |
HC13 |
289.5 |
300.0 |
C1 |
C2 |
HC22 |
C3 |
127.2 |
119.9 |
C1 |
C2 |
HC22 |
HC21 |
243.6 |
240.0 |
C3 |
C2 |
HC22 |
HC21 |
116.4 |
120.1 |
HC22 |
C2 |
C3 |
C4 |
74.4 |
299.9 |
HC22 |
C2 |
C3 |
HC31 |
199.7 |
60.0 |
HC22 |
C2 |
C3 |
HC32 |
309.2 |
180.0 |
C4 |
C3 |
C2 |
HC21 |
183.9 |
59.9 |
C4 |
C3 |
C2 |
HC22 |
74.4 |
299.9 |
C2 |
C3 |
C4 |
HC31 |
125.3 |
120.1 |
C2 |
C3 |
C4 |
HC32 |
234.7 |
240.1 |
HC31 |
C3 |
C4 |
HC32 |
109.4 |
120.0 |
C5 |
C4 |
C3 |
HC41 |
234.7 |
239.9 |
C5 |
C4 |
C3 |
HC42 |
125.2 |
119.9 |
C3 |
C4 |
C5 |
N1 |
182.5 |
180.1 |
C3 |
C4 |
C5 |
HC51 |
307.8 |
300.1 |
C3 |
C4 |
C5 |
HC52 |
57.3 |
60.0 |
HC41 |
C4 |
C3 |
HC42 |
250.5 |
240.0 |
HC31 |
C3 |
C2 |
HC21 |
309.1 |
180.0 |
HC31 |
C3 |
C2 |
HC22 |
199.7 |
60.0 |
C2 |
C3 |
HC31 |
C4 |
234.9 |
239.9 |
C2 |
C3 |
HC31 |
HC32 |
117.5 |
120.0 |
C4 |
C3 |
HC31 |
HC32 |
242.6 |
240.1 |
HC31 |
C3 |
C4 |
C5 |
59.7 |
59.9 |
HC31 |
C3 |
C4 |
HC41 |
184.9 |
180.0 |
HC31 |
C3 |
C4 |
HC42 |
294.4 |
300.0 |
HC32 |
C3 |
C2 |
HC21 |
58.6 |
300.0 |
HC32 |
C3 |
C2 |
HC22 |
309.2 |
180.0 |
C2 |
C3 |
HC32 |
C4 |
125.0 |
119.9 |
C2 |
C3 |
HC32 |
HC31 |
242.4 |
240.0 |
C4 |
C3 |
HC32 |
HC31 |
117.4 |
120.0 |
HC32 |
C3 |
C4 |
C5 |
310.3 |
299.9 |
HC32 |
C3 |
C4 |
HC41 |
75.5 |
60.0 |
HC32 |
C3 |
C4 |
HC42 |
185.0 |
180.0 |
C5 |
C4 |
C3 |
HC31 |
59.7 |
59.9 |
C5 |
C4 |
C3 |
HC32 |
310.3 |
299.9 |
C3 |
C4 |
C5 |
HC41 |
125.3 |
120.2 |
C3 |
C4 |
C5 |
HC42 |
234.7 |
240.0 |
HC41 |
C4 |
C5 |
HC42 |
109.4 |
119.9 |
N1 |
C5 |
C4 |
HC51 |
234.7 |
240.0 |
N1 |
C5 |
C4 |
HC52 |
125.3 |
120.0 |
C4 |
C5 |
N1 |
HN11 |
180.0 |
180.1 |
C4 |
C5 |
N1 |
HN12 |
54.7 |
293.8 |
HC51 |
C5 |
C4 |
HC52 |
250.5 |
240.0 |
HC41 |
C4 |
C3 |
HC31 |
184.9 |
180.0 |
HC41 |
C4 |
C3 |
HC32 |
75.5 |
60.0 |
C3 |
C4 |
HC41 |
C5 |
234.6 |
239.9 |
C3 |
C4 |
HC41 |
HC42 |
117.3 |
120.0 |
C5 |
C4 |
HC41 |
HC42 |
242.7 |
240.1 |
HC41 |
C4 |
C5 |
N1 |
57.2 |
59.9 |
HC41 |
C4 |
C5 |
HC51 |
182.5 |
179.9 |
HC41 |
C4 |
C5 |
HC52 |
292.0 |
299.9 |
HC42 |
C4 |
C3 |
HC31 |
294.4 |
300.0 |
HC42 |
C4 |
C3 |
HC32 |
185.0 |
180.0 |
C3 |
C4 |
HC42 |
C5 |
125.4 |
120.0 |
C3 |
C4 |
HC42 |
HC41 |
242.7 |
239.9 |
C5 |
C4 |
HC42 |
HC41 |
117.3 |
119.9 |
HC42 |
C4 |
C5 |
N1 |
307.8 |
300.0 |
HC42 |
C4 |
C5 |
HC51 |
73.0 |
60.1 |
HC42 |
C4 |
C5 |
HC52 |
182.5 |
180.0 |
N1 |
C5 |
C4 |
HC41 |
57.2 |
59.9 |
N1 |
C5 |
C4 |
HC42 |
307.8 |
300.0 |
C4 |
C5 |
N1 |
HC51 |
125.3 |
120.1 |
C4 |
C5 |
N1 |
HC52 |
234.7 |
240.0 |
HC51 |
C5 |
N1 |
HC52 |
109.4 |
119.9 |
HN11 |
N1 |
C5 |
HN12 |
125.3 |
246.3 |
HC51 |
C5 |
C4 |
HC41 |
182.5 |
179.9 |
HC51 |
C5 |
C4 |
HC42 |
73.0 |
60.1 |
C4 |
C5 |
HC51 |
N1 |
235.9 |
239.9 |
C4 |
C5 |
HC51 |
HC52 |
118.0 |
120.0 |
N1 |
C5 |
HC51 |
HC52 |
242.1 |
240.1 |
HC51 |
C5 |
N1 |
HN11 |
54.7 |
60.0 |
HC51 |
C5 |
N1 |
HN12 |
289.4 |
173.8 |
HC52 |
C5 |
C4 |
HC41 |
292.0 |
299.9 |
HC52 |
C5 |
C4 |
HC42 |
182.5 |
180.0 |
C4 |
C5 |
HC52 |
N1 |
124.1 |
120.1 |
C4 |
C5 |
HC52 |
HC51 |
242.0 |
240.0 |
N1 |
C5 |
HC52 |
HC51 |
117.9 |
119.9 |
HC52 |
C5 |
N1 |
HN11 |
305.3 |
300.1 |
HC52 |
C5 |
N1 |
HN12 |
180.0 |
53.8 |
HN11 |
N1 |
C5 |
HC51 |
54.7 |
60.0 |
HN11 |
N1 |
C5 |
HC52 |
305.3 |
300.1 |
C5 |
N1 |
HN11 |
HN12 |
234.6 |
113.7 |
HN12 |
N1 |
C5 |
HC51 |
289.4 |
173.8 |
HN12 |
N1 |
C5 |
HC52 |
180.0 |
53.8 |
C5 |
N1 |
HN12 |
HN11 |
124.2 |
246.2 |