PDB Chemical Component AMJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AMJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.230 |
1.214 |
| C |
CA |
1.530 |
1.507 |
| C |
NAL |
1.330 |
1.348 |
| N |
CA |
1.470 |
1.465 |
| N |
CAO |
1.330 |
1.347 |
| CA |
CB |
1.530 |
1.531 |
| CB |
OAN |
1.436 |
1.428 |
| CAA |
OAN |
1.430 |
1.428 |
| CAB |
CAO |
1.530 |
1.507 |
| OAC |
CAO |
1.231 |
1.213 |
| CAE |
CAF |
1.390 |
1.382 |
| CAE |
CAG |
1.389 |
1.383 |
| CAF |
CAH |
1.390 |
1.382 |
| CAG |
CAI |
1.390 |
1.382 |
| CAH |
CAQ |
1.390 |
1.382 |
| CAI |
CAQ |
1.390 |
1.382 |
| CAJ |
NAL |
1.470 |
1.465 |
| CAJ |
CAQ |
1.530 |
1.507 |
| N |
HN |
1.000 |
0.970 |
| CA |
HA |
1.100 |
1.089 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CAA |
HAA |
1.100 |
1.090 |
| CAA |
HAAA |
1.100 |
1.090 |
| CAA |
HAAB |
1.100 |
1.089 |
| CAB |
HAB |
1.100 |
1.089 |
| CAB |
HABA |
1.100 |
1.091 |
| CAB |
HABB |
1.100 |
1.090 |
| CAE |
HAE |
1.080 |
1.080 |
| CAF |
HAF |
1.080 |
1.080 |
| CAG |
HAG |
1.080 |
1.079 |
| CAH |
HAH |
1.080 |
1.080 |
| CAI |
HAI |
1.080 |
1.081 |
| CAJ |
HAJ |
1.100 |
1.090 |
| CAJ |
HAJA |
1.100 |
1.090 |
| NAL |
HNAL |
1.000 |
0.969 |
Bond Angles for AMJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
121.0 |
120.0 |
| O |
C |
NAL |
124.1 |
120.0 |
| CA |
C |
NAL |
115.0 |
120.0 |
| C |
CA |
N |
109.5 |
109.5 |
| C |
CA |
CB |
109.5 |
109.4 |
| C |
CA |
HA |
109.5 |
109.5 |
| C |
NAL |
CAJ |
122.0 |
120.0 |
| C |
NAL |
HNAL |
119.0 |
120.0 |
| CA |
N |
CAO |
122.0 |
120.0 |
| N |
CA |
CB |
109.5 |
109.4 |
| CA |
N |
HN |
119.0 |
120.0 |
| N |
CA |
HA |
109.4 |
109.5 |
| N |
CAO |
CAB |
115.0 |
120.0 |
| N |
CAO |
OAC |
124.0 |
120.0 |
| CAO |
N |
HN |
119.0 |
120.0 |
| CA |
CB |
OAN |
109.5 |
109.5 |
| CB |
CA |
HA |
109.4 |
109.5 |
| CA |
CB |
HB |
109.5 |
109.5 |
| CA |
CB |
HBA |
109.5 |
109.4 |
| CB |
OAN |
CAA |
109.5 |
114.0 |
| OAN |
CB |
HB |
109.5 |
109.5 |
| OAN |
CB |
HBA |
109.5 |
109.5 |
| OAN |
CAA |
HAA |
109.5 |
109.5 |
| OAN |
CAA |
HAAA |
109.5 |
109.5 |
| OAN |
CAA |
HAAB |
109.5 |
109.5 |
| CAB |
CAO |
OAC |
121.0 |
120.0 |
| CAO |
CAB |
HAB |
109.5 |
109.5 |
| CAO |
CAB |
HABA |
109.4 |
109.5 |
| CAO |
CAB |
HABB |
109.5 |
109.5 |
| CAF |
CAE |
CAG |
120.0 |
120.0 |
| CAE |
CAF |
CAH |
120.0 |
120.1 |
| CAF |
CAE |
HAE |
120.0 |
120.1 |
| CAE |
CAF |
HAF |
120.0 |
120.0 |
| CAE |
CAG |
CAI |
120.0 |
120.0 |
| CAG |
CAE |
HAE |
120.0 |
120.0 |
| CAE |
CAG |
HAG |
120.0 |
120.0 |
| CAF |
CAH |
CAQ |
120.0 |
120.0 |
| CAH |
CAF |
HAF |
120.0 |
120.0 |
| CAF |
CAH |
HAH |
120.0 |
120.0 |
| CAG |
CAI |
CAQ |
120.0 |
120.0 |
| CAI |
CAG |
HAG |
120.0 |
120.0 |
| CAG |
CAI |
HAI |
120.0 |
120.0 |
| CAH |
CAQ |
CAI |
120.0 |
120.0 |
| CAH |
CAQ |
CAJ |
120.0 |
120.0 |
| CAQ |
CAH |
HAH |
120.0 |
120.0 |
| CAI |
CAQ |
CAJ |
120.0 |
120.0 |
| CAQ |
CAI |
HAI |
120.0 |
120.0 |
| NAL |
CAJ |
CAQ |
109.5 |
109.5 |
| NAL |
CAJ |
HAJ |
109.5 |
109.5 |
| NAL |
CAJ |
HAJA |
109.5 |
109.5 |
| CAJ |
NAL |
HNAL |
119.0 |
120.0 |
| CAQ |
CAJ |
HAJ |
109.5 |
109.5 |
| CAQ |
CAJ |
HAJA |
109.4 |
109.4 |
| HB |
CB |
HBA |
109.5 |
109.5 |
| HAA |
CAA |
HAAA |
109.5 |
109.4 |
| HAA |
CAA |
HAAB |
109.5 |
109.4 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAB |
CAB |
HABA |
109.5 |
109.5 |
| HAB |
CAB |
HABB |
109.5 |
109.5 |
| HABA |
CAB |
HABB |
109.5 |
109.4 |
| HAJ |
CAJ |
HAJA |
109.5 |
109.5 |
Torsion Angles for AMJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
NAL |
179.9 |
180.2 |
| O |
C |
CA |
N |
104.5 |
0.1 |
| O |
C |
CA |
CB |
224.7 |
120.0 |
| O |
C |
CA |
HA |
344.6 |
240.0 |
| O |
C |
NAL |
CAJ |
360.0 |
360.0 |
| O |
C |
NAL |
HNAL |
179.9 |
180.0 |
| O |
C |
CA |
NAL |
180.0 |
179.8 |
| CA |
C |
NAL |
CAJ |
180.0 |
179.8 |
| CA |
C |
NAL |
HNAL |
360.0 |
359.7 |
| C |
CA |
N |
CAO |
312.3 |
205.0 |
| N |
CA |
C |
CB |
239.9 |
240.0 |
| C |
CA |
N |
HN |
132.3 |
24.9 |
| N |
CA |
C |
HA |
119.9 |
120.1 |
| C |
CA |
CB |
OAN |
214.4 |
305.0 |
| CB |
CA |
C |
HA |
240.1 |
240.0 |
| C |
CA |
CB |
HB |
334.4 |
65.0 |
| C |
CA |
CB |
HBA |
94.4 |
185.0 |
| O |
C |
NAL |
CA |
180.0 |
180.2 |
| NAL |
C |
CA |
N |
284.5 |
180.3 |
| NAL |
C |
CA |
CB |
44.6 |
300.3 |
| NAL |
C |
CA |
HA |
164.6 |
60.2 |
| C |
NAL |
CAJ |
CAQ |
106.4 |
180.0 |
| C |
NAL |
CAJ |
HAJ |
226.4 |
300.0 |
| C |
NAL |
CAJ |
HAJA |
346.4 |
60.0 |
| CAJ |
NAL |
C |
HNAL |
180.0 |
180.0 |
| N |
CA |
C |
NAL |
284.5 |
180.3 |
| C |
CA |
N |
CB |
120.1 |
119.9 |
| C |
CA |
N |
HA |
240.0 |
239.9 |
| CA |
N |
CAO |
CAB |
0.0 |
180.0 |
| CA |
N |
CAO |
OAC |
180.0 |
360.0 |
| CAO |
N |
CA |
HN |
180.0 |
180.1 |
| N |
CA |
CB |
OAN |
334.5 |
65.0 |
| CB |
CA |
N |
HA |
119.9 |
120.0 |
| N |
CA |
CB |
HB |
94.5 |
185.0 |
| N |
CA |
CB |
HBA |
214.5 |
305.0 |
| CAO |
N |
CA |
CB |
192.2 |
85.1 |
| CA |
N |
CAO |
HN |
180.0 |
179.9 |
| CAO |
N |
CA |
HA |
72.3 |
325.1 |
| CAB |
CAO |
N |
OAC |
180.1 |
180.0 |
| N |
CAO |
CAB |
HAB |
179.9 |
90.0 |
| N |
CAO |
CAB |
HABA |
299.9 |
210.0 |
| N |
CAO |
CAB |
HABB |
59.9 |
330.0 |
| CB |
CA |
C |
NAL |
44.6 |
300.3 |
| C |
CA |
CB |
N |
239.9 |
240.0 |
| C |
CA |
CB |
HA |
120.0 |
120.0 |
| CB |
CA |
N |
CAO |
192.2 |
85.1 |
| CB |
CA |
N |
HN |
12.3 |
265.0 |
| N |
CA |
CB |
HA |
240.0 |
240.0 |
| CA |
CB |
OAN |
CAA |
75.3 |
180.0 |
| OAN |
CB |
CA |
HB |
240.0 |
239.9 |
| OAN |
CB |
CA |
HBA |
120.0 |
120.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| OAN |
CB |
CA |
HA |
94.4 |
185.0 |
| CA |
CB |
OAN |
HB |
120.0 |
120.0 |
| CA |
CB |
OAN |
HBA |
240.0 |
240.1 |
| CB |
OAN |
CAA |
HAA |
180.0 |
300.0 |
| CB |
OAN |
CAA |
HAAA |
300.0 |
60.0 |
| CB |
OAN |
CAA |
HAAB |
60.0 |
180.0 |
| HB |
CB |
OAN |
HBA |
120.0 |
120.0 |
| CAA |
OAN |
CB |
HB |
315.3 |
60.0 |
| CAA |
OAN |
CB |
HBA |
195.3 |
299.9 |
| HAA |
CAA |
OAN |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
OAN |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
OAN |
HAAB |
240.0 |
239.9 |
| N |
CAO |
CAB |
OAC |
179.9 |
180.0 |
| CAB |
CAO |
N |
HN |
180.0 |
0.1 |
| HAB |
CAB |
CAO |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
CAO |
HABB |
120.0 |
120.1 |
| HABA |
CAB |
CAO |
HABB |
240.0 |
240.0 |
| N |
CAO |
OAC |
CAB |
180.1 |
180.0 |
| OAC |
CAO |
N |
HN |
359.9 |
180.1 |
| OAC |
CAO |
CAB |
HAB |
0.0 |
270.0 |
| OAC |
CAO |
CAB |
HABA |
120.0 |
30.0 |
| OAC |
CAO |
CAB |
HABB |
240.0 |
149.9 |
| CAF |
CAE |
CAG |
CAI |
360.0 |
359.8 |
| CAG |
CAE |
CAF |
HAE |
180.0 |
180.4 |
| CAF |
CAE |
CAG |
HAG |
180.0 |
180.0 |
| CAE |
CAF |
CAH |
CAQ |
360.0 |
360.0 |
| CAH |
CAF |
CAE |
HAF |
180.0 |
180.2 |
| CAE |
CAF |
CAH |
HAH |
179.9 |
179.9 |
| CAG |
CAE |
CAF |
CAH |
0.0 |
0.1 |
| CAF |
CAE |
CAG |
HAE |
180.0 |
179.6 |
| CAG |
CAE |
CAF |
HAF |
180.0 |
179.9 |
| CAE |
CAG |
CAI |
CAQ |
0.0 |
0.1 |
| CAI |
CAG |
CAE |
HAG |
180.0 |
179.9 |
| CAE |
CAG |
CAI |
HAI |
180.0 |
180.1 |
| CAH |
CAF |
CAE |
CAG |
0.0 |
0.1 |
| CAH |
CAF |
CAE |
HAE |
180.0 |
179.7 |
| CAE |
CAF |
CAH |
HAF |
180.0 |
179.8 |
| CAF |
CAH |
CAQ |
CAI |
0.0 |
359.9 |
| CAF |
CAH |
CAQ |
CAJ |
180.0 |
180.0 |
| CAQ |
CAH |
CAF |
HAH |
180.0 |
180.1 |
| CAI |
CAG |
CAE |
HAE |
180.0 |
180.3 |
| CAE |
CAG |
CAI |
HAG |
180.0 |
180.1 |
| CAH |
CAQ |
CAI |
CAG |
360.0 |
0.0 |
| CAG |
CAI |
CAQ |
CAJ |
180.0 |
180.0 |
| CAQ |
CAI |
CAG |
HAI |
180.0 |
180.0 |
| CAQ |
CAH |
CAF |
HAF |
180.0 |
180.2 |
| CAF |
CAH |
CAQ |
HAH |
180.0 |
179.9 |
| CAG |
CAI |
CAQ |
CAH |
360.0 |
0.0 |
| CAI |
CAQ |
CAH |
CAJ |
180.0 |
180.0 |
| CAH |
CAQ |
CAI |
HAI |
179.9 |
180.0 |
| NAL |
CAJ |
CAQ |
CAH |
234.6 |
90.0 |
| CAH |
CAQ |
CAJ |
HAJ |
114.6 |
330.0 |
| CAH |
CAQ |
CAJ |
HAJA |
354.6 |
210.0 |
| CAQ |
CAI |
CAG |
HAG |
180.0 |
180.0 |
| CAG |
CAI |
CAQ |
HAI |
180.0 |
180.0 |
| CAH |
CAQ |
CAI |
CAJ |
180.0 |
180.0 |
| CAI |
CAQ |
CAH |
HAH |
180.1 |
180.0 |
| NAL |
CAJ |
CAQ |
CAI |
54.5 |
270.0 |
| CAI |
CAQ |
CAJ |
HAJ |
294.5 |
150.0 |
| CAI |
CAQ |
CAJ |
HAJA |
174.6 |
30.0 |
| C |
NAL |
CAJ |
HNAL |
180.0 |
180.0 |
| CAH |
CAQ |
CAJ |
NAL |
234.6 |
90.0 |
| CAI |
CAQ |
CAJ |
NAL |
54.5 |
270.0 |
| CAQ |
CAJ |
NAL |
HAJ |
240.0 |
240.0 |
| CAQ |
CAJ |
NAL |
HAJA |
120.0 |
120.0 |
| HAJ |
CAJ |
NAL |
HAJA |
240.0 |
240.0 |
| CAH |
CAQ |
CAJ |
CAI |
180.0 |
180.0 |
| CAJ |
CAQ |
CAH |
HAH |
0.0 |
0.0 |
| CAJ |
CAQ |
CAI |
HAI |
360.0 |
360.0 |
| NAL |
CAJ |
CAQ |
HAJ |
120.0 |
120.0 |
| NAL |
CAJ |
CAQ |
HAJA |
240.0 |
240.0 |
| CAQ |
CAJ |
NAL |
HNAL |
286.4 |
0.0 |
| HAJ |
CAJ |
CAQ |
HAJA |
120.0 |
120.0 |
| CA |
N |
HN |
CAO |
180.0 |
180.1 |
| HN |
N |
CA |
CB |
12.3 |
265.0 |
| HN |
N |
CA |
HA |
252.3 |
145.0 |
| HN |
N |
CAO |
CAB |
180.0 |
0.1 |
| HN |
N |
CAO |
OAC |
359.9 |
180.1 |
| HA |
CA |
C |
NAL |
164.6 |
60.2 |
| C |
CA |
HA |
N |
120.0 |
120.1 |
| C |
CA |
HA |
CB |
240.0 |
240.1 |
| HA |
CA |
N |
CAO |
72.3 |
325.1 |
| N |
CA |
HA |
CB |
120.0 |
120.0 |
| HA |
CA |
N |
HN |
252.3 |
145.0 |
| HA |
CA |
CB |
OAN |
94.4 |
185.0 |
| HA |
CA |
CB |
HB |
214.4 |
305.0 |
| HA |
CA |
CB |
HBA |
334.4 |
65.0 |
| CA |
CB |
HB |
OAN |
240.0 |
240.0 |
| HB |
CB |
CA |
HA |
214.4 |
305.0 |
| CA |
CB |
HB |
HBA |
120.0 |
119.9 |
| HB |
CB |
OAN |
CAA |
315.3 |
60.0 |
| OAN |
CB |
HB |
HBA |
240.0 |
240.0 |
| CA |
CB |
HBA |
OAN |
120.0 |
120.0 |
| HBA |
CB |
CA |
HA |
334.4 |
65.0 |
| CA |
CB |
HBA |
HB |
240.0 |
240.0 |
| HBA |
CB |
OAN |
CAA |
195.3 |
299.9 |
| OAN |
CB |
HBA |
HB |
120.0 |
120.0 |
| OAN |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
| OAN |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
119.9 |
| OAN |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| OAN |
CAA |
HAAA |
HAAB |
120.0 |
120.1 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.1 |
| OAN |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| OAN |
CAA |
HAAB |
HAAA |
240.0 |
239.9 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
119.9 |
| HAB |
CAB |
CAO |
OAC |
0.0 |
270.0 |
| CAO |
CAB |
HAB |
HABA |
120.0 |
120.0 |
| CAO |
CAB |
HAB |
HABB |
240.0 |
239.9 |
| HABA |
CAB |
HAB |
HABB |
120.0 |
119.9 |
| HABA |
CAB |
CAO |
OAC |
120.0 |
30.0 |
| CAO |
CAB |
HABA |
HAB |
240.0 |
240.0 |
| CAO |
CAB |
HABA |
HABB |
120.0 |
120.0 |
| HAB |
CAB |
HABA |
HABB |
240.0 |
240.0 |
| HABB |
CAB |
CAO |
OAC |
240.0 |
149.9 |
| CAO |
CAB |
HABB |
HAB |
120.0 |
120.1 |
| CAO |
CAB |
HABB |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
HABB |
HABA |
120.0 |
120.0 |
| CAF |
CAE |
HAE |
CAG |
180.0 |
180.4 |
| HAE |
CAE |
CAF |
CAH |
180.0 |
179.7 |
| HAE |
CAE |
CAF |
HAF |
0.0 |
359.5 |
| HAE |
CAE |
CAG |
CAI |
180.0 |
180.3 |
| HAE |
CAE |
CAG |
HAG |
360.0 |
0.4 |
| HAF |
CAF |
CAE |
CAG |
180.0 |
179.9 |
| CAE |
CAF |
HAF |
CAH |
180.0 |
180.2 |
| HAF |
CAF |
CAE |
HAE |
0.0 |
359.5 |
| HAF |
CAF |
CAH |
CAQ |
180.0 |
180.2 |
| HAF |
CAF |
CAH |
HAH |
360.0 |
0.1 |
| CAE |
CAG |
HAG |
CAI |
180.0 |
179.9 |
| HAG |
CAG |
CAE |
HAE |
360.0 |
0.4 |
| HAG |
CAG |
CAI |
CAQ |
180.0 |
180.0 |
| HAG |
CAG |
CAI |
HAI |
0.0 |
360.0 |
| CAF |
CAH |
HAH |
CAQ |
180.0 |
180.1 |
| HAH |
CAH |
CAF |
HAF |
360.0 |
0.1 |
| HAH |
CAH |
CAQ |
CAI |
180.1 |
180.0 |
| HAH |
CAH |
CAQ |
CAJ |
0.0 |
0.0 |
| CAG |
CAI |
HAI |
CAQ |
180.0 |
180.0 |
| HAI |
CAI |
CAG |
HAG |
0.0 |
360.0 |
| HAI |
CAI |
CAQ |
CAJ |
360.0 |
360.0 |
| NAL |
CAJ |
HAJ |
CAQ |
240.0 |
240.0 |
| NAL |
CAJ |
HAJ |
HAJA |
120.0 |
120.1 |
| HAJ |
CAJ |
NAL |
HNAL |
46.4 |
120.0 |
| CAQ |
CAJ |
HAJ |
HAJA |
240.0 |
240.1 |
| NAL |
CAJ |
HAJA |
CAQ |
120.0 |
120.0 |
| NAL |
CAJ |
HAJA |
HAJ |
240.0 |
240.0 |
| HAJA |
CAJ |
NAL |
HNAL |
166.4 |
240.0 |
| CAQ |
CAJ |
HAJA |
HAJ |
120.0 |
120.0 |
| C |
NAL |
HNAL |
CAJ |
180.0 |
180.0 |
| HNAL |
NAL |
CAJ |
CAQ |
286.4 |
0.0 |
| HNAL |
NAL |
CAJ |
HAJ |
46.4 |
120.0 |
| HNAL |
NAL |
CAJ |
HAJA |
166.4 |
240.0 |