PDB Chemical Component AMI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AMI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.548	1.554
C1	C5	1.541	1.554
C1	O7	1.429	1.446
C1	H1	1.115	1.090
C2	C3	1.534	1.535
C2	N2	1.415	1.473
C2	H2	1.114	1.090
C3	C4	1.531	1.535
C3	O3	1.411	1.428
C3	H3	1.116	1.090
C4	C5	1.526	1.533
C4	O4	1.426	1.429
C4	H4	1.115	1.090
C5	C6	1.535	1.530
C5	H5	1.116	1.090
C6	O6	1.409	1.428
C6	H61	1.116	1.090
C6	H62	1.114	1.090
C7	N2	1.357	1.299
C7	N7	1.355	1.373
C7	O7	1.348	1.347
C8	N7	1.420	1.465
C8	H81	1.115	1.090
C8	H82	1.114	1.089
C8	H83	1.116	1.090
C9	N7	1.426	1.464
C9	H91	1.115	1.090
C9	H92	1.115	1.089
C9	H93	1.115	1.090
O3	HO3	0.951	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.967

Bond Angles for AMI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	105.1	104.8
C2	C1	O7	103.8	100.7
C2	C1	H1	115.9	114.1
C1	C2	C3	104.4	105.7
C1	C2	N2	104.5	101.9
C1	C2	H2	116.1	113.0
C5	C1	O7	109.9	108.9
C5	C1	H1	110.3	113.3
C1	C5	C4	106.1	107.8
C1	C5	C6	112.9	109.8
C1	C5	H5	109.9	109.8
O7	C1	H1	111.5	114.0
C1	O7	C7	108.8	107.5
C3	C2	N2	110.7	110.1
C3	C2	H2	110.5	112.6
C2	C3	C4	104.0	106.3
C2	C3	O3	109.1	110.1
C2	C3	H3	113.5	110.1
N2	C2	H2	110.4	112.8
C2	N2	C7	108.7	108.3
C4	C3	O3	110.2	110.1
C4	C3	H3	112.4	110.1
C3	C4	C5	100.0	107.2
C3	C4	O4	112.6	109.9
C3	C4	H4	113.0	109.9
O3	C3	H3	107.6	110.0
C3	O3	HO3	109.0	106.8
C5	C4	O4	107.7	110.0
C5	C4	H4	117.6	109.9
C4	C5	C6	110.6	109.8
C4	C5	H5	112.2	109.9
O4	C4	H4	106.0	109.9
C4	O4	HO4	112.6	106.8
C6	C5	H5	105.3	109.8
C5	C6	O6	107.2	109.5
C5	C6	H61	113.0	109.4
C5	C6	H62	113.1	109.5
O6	C6	H61	113.0	109.4
O6	C6	H62	113.1	109.5
C6	O6	HO6	107.3	106.9
H61	C6	H62	97.4	109.5
N2	C7	N7	130.2	123.1
N2	C7	O7	113.1	113.8
N7	C7	O7	116.7	123.1
C7	N7	C8	117.7	120.0
C7	N7	C9	125.1	120.0
N7	C8	H81	117.7	109.5
N7	C8	H82	109.2	109.4
N7	C8	H83	109.2	109.5
C8	N7	C9	117.1	120.0
H81	C8	H82	109.3	109.5
H81	C8	H83	109.2	109.5
H82	C8	H83	100.9	109.5
N7	C9	H91	125.2	109.5
N7	C9	H92	106.7	109.5
N7	C9	H93	106.7	109.4
H91	C9	H92	106.6	109.6
H91	C9	H93	106.7	109.4
H92	C9	H93	102.9	109.4

Torsion Angles for AMI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C1	C2	O7	115.4	112.9
C5	C1	C2	H1	237.9	235.5
C2	C1	C5	C4	18.6	16.6
C2	C1	C5	C6	139.9	136.2
C2	C1	C5	H5	257.1	257.0
O7	C1	C2	H1	122.5	122.5
C2	C1	O7	C7	351.7	26.9
C3	C2	C1	N2	243.7	244.9
C3	C2	C1	H2	121.9	123.6
C1	C2	C3	C4	325.8	28.2
C1	C2	C3	O3	208.2	268.9
C1	C2	C3	H3	88.2	147.4
N2	C2	C1	H2	238.2	238.7
C1	C2	N2	C7	351.0	16.2
C2	C1	C5	O7	248.9	253.0
C2	C1	C5	H1	125.6	125.0
C5	C1	C2	C3	9.5	332.5
C5	C1	C2	N2	125.8	87.6
C5	C1	C2	H2	247.7	208.9
O7	C1	C5	H1	236.7	232.0
C5	C1	O7	C7	239.8	277.1
C3	C4	C5	C1	321.0	0.5
C1	C5	C4	O4	203.2	241.0
C1	C5	C4	H4	83.6	119.9
C4	C5	C1	C6	238.8	240.4
C4	C5	C1	H5	121.5	119.7
C6	C5	C1	H5	242.8	239.2
C1	C5	C6	O6	70.0	180.3
C1	C5	C6	H61	195.2	300.2
C1	C5	C6	H62	304.7	60.2
C2	C1	O7	C5	111.9	109.8
C2	C1	O7	H1	234.6	237.4
O7	C1	C2	C3	254.1	219.6
O7	C1	C2	N2	10.4	334.6
O7	C1	C2	H2	132.3	95.9
C5	C1	O7	H1	122.7	127.6
O7	C1	C5	C4	129.7	123.6
O7	C1	C5	C6	250.9	243.2
O7	C1	C5	H5	8.2	4.0
N2	C7	O7	C1	3.1	341.2
N7	C7	O7	C1	185.2	161.6
C2	C1	H1	C5	240.8	240.2
C2	C1	H1	O7	118.4	114.9
H1	C1	C2	C3	131.6	97.0
H1	C1	C2	N2	247.9	212.1
H1	C1	C2	H2	9.7	333.4
C5	C1	H1	O7	237.6	234.7
H1	C1	C5	C4	253.0	251.6
H1	C1	C5	C6	14.3	11.2
H1	C1	C5	H5	131.5	132.0
H1	C1	O7	C7	117.1	149.5
C3	C2	C1	C5	9.5	332.5
C3	C2	C1	O7	254.1	219.6
C3	C2	C1	H1	131.6	97.0
C1	C2	C3	N2	111.9	109.3
C1	C2	C3	H2	234.5	236.1
N2	C2	C3	H2	122.6	126.8
C3	C2	N2	C7	102.9	128.1
C4	C3	C2	O3	117.6	119.3
C4	C3	C2	H3	237.6	240.8
C2	C3	C4	C5	45.0	342.2
C2	C3	C4	O4	159.1	101.7
C2	C3	C4	H4	279.2	222.8
O3	C3	C2	H3	120.0	121.5
C2	C3	O3	HO3	180.0	180.0
N2	C2	C1	C5	125.8	87.6
N2	C2	C1	O7	10.4	334.6
N2	C2	C1	H1	247.9	212.1
C1	C2	N2	C3	248.2	248.2
C1	C2	N2	H2	125.5	121.4
C3	C2	N2	H2	237.4	233.3
N2	C2	C3	C4	213.9	278.9
N2	C2	C3	O3	96.3	159.6
N2	C2	C3	H3	336.3	38.1
C2	N2	C7	N7	181.8	180.1
C2	N2	C7	O7	4.2	0.5
H2	C2	C1	C5	247.7	208.9
H2	C2	C1	O7	132.3	95.9
H2	C2	C1	H1	9.7	333.4
C1	C2	H2	C3	118.6	119.7
C1	C2	H2	N2	241.3	245.1
C3	C2	H2	N2	122.7	125.4
H2	C2	C3	C4	91.3	152.1
H2	C2	C3	O3	333.7	32.8
H2	C2	C3	H3	213.7	271.3
H2	C2	N2	C7	225.5	254.8
C1	C5	C4	C3	321.0	0.5
C4	C3	C2	N2	213.9	278.9
C4	C3	C2	H2	91.3	152.1
C2	C3	C4	O3	243.2	240.7
C2	C3	C4	H3	123.2	119.2
O3	C3	C4	H3	239.9	238.5
C4	C3	O3	HO3	66.5	63.1
C5	C4	C3	O4	245.9	240.5
C5	C4	C3	H4	125.8	119.4
C3	C4	C5	C6	198.2	240.9
C3	C4	C5	H5	81.0	120.1
O4	C4	C3	H4	239.9	238.9
C3	C4	O4	HO4	180.0	61.5
O3	C3	C2	N2	96.3	159.6
O3	C3	C2	H2	333.7	32.8
C2	C3	O3	C4	113.6	116.9
C2	C3	O3	H3	236.5	238.5
C4	C3	O3	H3	122.9	121.5
O3	C3	C4	C5	161.8	101.5
O3	C3	C4	O4	275.8	221.0
O3	C3	C4	H4	35.9	342.1
H3	C3	C2	N2	336.3	38.1
H3	C3	C2	H2	213.7	271.3
C2	C3	H3	C4	242.4	243.1
C2	C3	H3	O3	120.8	121.6
C4	C3	H3	O3	238.4	238.4
H3	C3	C4	C5	281.8	223.0
H3	C3	C4	O4	35.9	342.5
H3	C3	C4	H4	156.0	103.6
H3	C3	O3	HO3	303.6	301.5
C4	C5	C1	O7	129.7	123.6
C4	C5	C1	H1	253.0	251.6
C1	C5	C4	C6	122.7	119.6
C1	C5	C4	H5	240.0	240.4
C5	C4	C3	O3	161.8	101.5
C5	C4	C3	H3	281.8	223.0
C3	C4	C5	O4	117.8	119.5
C3	C4	C5	H4	237.3	240.6
O4	C4	C5	H4	119.5	121.1
C5	C4	O4	HO4	289.3	179.3
C6	C5	C4	H5	117.3	120.8
C4	C5	C6	O6	188.7	298.6
C4	C5	C6	H61	313.9	58.5
C4	C5	C6	H62	63.4	178.5
O4	C4	C3	O3	275.8	221.0
O4	C4	C3	H3	35.9	342.5
C3	C4	O4	C5	250.7	242.2
C3	C4	O4	H4	124.0	121.1
C5	C4	O4	H4	233.4	238.9
O4	C4	C5	C6	80.4	121.5
O4	C4	C5	H5	323.2	0.6
H4	C4	C3	O3	35.9	342.1
H4	C4	C3	H3	156.0	103.6
C3	C4	H4	C5	115.8	117.8
C3	C4	H4	O4	236.2	238.9
C5	C4	H4	O4	120.4	121.2
H4	C4	C5	C6	320.9	0.4
H4	C4	C5	H5	203.6	239.5
H4	C4	O4	HO4	56.0	300.4
C6	C5	C1	O7	250.9	243.2
C6	C5	C1	H1	14.3	11.2
C1	C5	C6	C4	241.3	241.7
C1	C5	C6	H5	119.9	120.8
C6	C5	C4	O4	80.4	121.5
C6	C5	C4	H4	320.9	0.4
C4	C5	C6	H5	238.6	239.1
O6	C6	C5	H61	234.8	240.1
O6	C6	C5	H62	125.3	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	250.5	240.0
H5	C5	C1	O7	8.2	4.0
H5	C5	C1	H1	131.5	132.0
C1	C5	H5	C4	117.8	118.4
C1	C5	H5	C6	238.1	239.2
H5	C5	C4	O4	323.2	0.6
H5	C5	C4	H4	203.6	239.5
C4	C5	H5	C6	120.3	120.8
H5	C5	C6	O6	310.1	59.5
H5	C5	C6	H61	75.4	179.4
H5	C5	C6	H62	184.8	299.4
O6	C6	C5	H5	310.1	59.5
C5	C6	O6	H61	125.2	120.0
C5	C6	O6	H62	234.7	240.0
H61	C6	O6	H62	109.5	120.0
H61	C6	C5	H5	75.4	179.4
C5	C6	H61	O6	238.0	240.0
C5	C6	H61	H62	119.0	120.0
O6	C6	H61	H62	241.0	240.0
H61	C6	O6	HO6	54.8	60.0
H62	C6	C5	H5	184.8	299.4
C5	C6	H62	O6	122.1	120.1
C5	C6	H62	H61	241.1	240.0
O6	C6	H62	H61	119.0	120.0
H62	C6	O6	HO6	305.3	300.0
C1	O7	C7	N2	3.1	341.2
C7	N2	C2	H2	225.5	254.8
N7	C7	N2	O7	177.6	179.6
N2	C7	N7	C8	3.9	0.2
N2	C7	N7	C9	183.8	180.0
C1	O7	C7	N7	185.2	161.6
N2	C7	N7	O7	182.5	180.4
C7	N7	C8	H81	180.0	179.9
C7	N7	C8	H82	305.3	299.9
C7	N7	C8	H83	54.8	59.9
C8	N7	C7	C9	180.1	180.2
C7	N7	C9	H91	180.0	180.0
C7	N7	C9	H92	305.2	300.2
C7	N7	C9	H93	54.7	60.1
C7	O7	C1	H1	117.1	149.5
N2	C7	O7	N7	178.0	179.6
O7	C7	N7	C8	181.5	179.7
O7	C7	N7	C9	1.4	359.6
C8	N7	C7	O7	181.5	179.7
C7	N7	C8	C9	179.9	179.8
H81	C8	N7	H82	234.7	240.0
H81	C8	N7	H83	125.2	120.0
H82	C8	N7	H83	250.5	240.0
C8	N7	C9	H91	359.9	359.9
C8	N7	C9	H92	125.1	120.0
C8	N7	C9	H93	234.6	239.9
N7	C8	H81	H82	125.3	119.9
N7	C8	H81	H83	234.8	240.0
H81	C8	N7	C9	0.1	0.1
H82	C8	H81	H83	109.5	120.0
N7	C8	H82	H81	229.9	240.0
N7	C8	H82	H83	115.0	120.0
H82	C8	N7	C9	125.4	120.1
H81	C8	H82	H83	245.0	239.9
N7	C8	H83	H81	130.0	120.0
N7	C8	H83	H82	245.0	240.1
H83	C8	N7	C9	234.9	240.1
H81	C8	H83	H82	115.0	120.1
C9	N7	C7	O7	1.4	359.6
C7	N7	C9	C8	180.1	180.2
C9	N7	C8	H81	0.1	0.1
C9	N7	C8	H82	125.4	120.1
C9	N7	C8	H83	234.9	240.1
H91	C9	N7	H92	234.8	239.8
H91	C9	N7	H93	125.3	119.9
H92	C9	N7	H93	250.5	240.1
N7	C9	H91	H92	125.2	120.1
N7	C9	H91	H93	234.7	240.0
H92	C9	H91	H93	109.4	119.9
N7	C9	H92	H91	224.2	239.9
N7	C9	H92	H93	112.1	119.9
H91	C9	H92	H93	247.9	240.1
N7	C9	H93	H91	135.9	120.0
N7	C9	H93	H92	247.9	240.0
H91	C9	H93	H92	112.0	120.0
HO3	O3	C3	H3	303.6	301.5
HO4	O4	C4	H4	56.0	300.4
HO6	O6	C6	H61	54.8	60.0
HO6	O6	C6	H62	305.3	300.0