PDB Chemical Component AME
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AME
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CT2 |
CT1 |
1.509 |
1.507 |
| CT2 |
HT23 |
1.100 |
1.090 |
| CT2 |
HT22 |
1.100 |
1.090 |
| CT2 |
HT21 |
1.100 |
1.090 |
| CT1 |
OT |
1.301 |
1.213 |
| CT1 |
N |
1.460 |
1.348 |
| CB |
CG |
1.523 |
1.530 |
| CB |
CA |
1.539 |
1.530 |
| CB |
HB2 |
1.100 |
1.089 |
| CB |
HB1 |
1.100 |
1.090 |
| CG |
SD |
1.818 |
1.815 |
| CG |
HG2 |
1.099 |
1.090 |
| CG |
HG1 |
1.101 |
1.090 |
| SD |
CE |
1.802 |
1.814 |
| CE |
HE3 |
1.101 |
1.090 |
| CE |
HE2 |
1.100 |
1.089 |
| CE |
HE1 |
1.100 |
1.091 |
| C |
O |
1.305 |
1.209 |
| C |
OXT |
1.306 |
1.342 |
| C |
CA |
1.482 |
1.507 |
| OXT |
HO |
0.950 |
0.967 |
| N |
CA |
1.452 |
1.465 |
| N |
HN1 |
1.000 |
0.970 |
| CA |
HA |
1.100 |
1.090 |
Bond Angles for AME
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CT1 |
CT2 |
HT23 |
109.5 |
109.5 |
| CT1 |
CT2 |
HT22 |
109.5 |
109.5 |
| CT1 |
CT2 |
HT21 |
109.5 |
109.5 |
| CT2 |
CT1 |
OT |
117.9 |
120.0 |
| CT2 |
CT1 |
N |
119.9 |
120.0 |
| HT23 |
CT2 |
HT22 |
109.5 |
109.5 |
| HT23 |
CT2 |
HT21 |
109.4 |
109.4 |
| HT22 |
CT2 |
HT21 |
109.5 |
109.5 |
| OT |
CT1 |
N |
122.2 |
120.0 |
| CT1 |
N |
CA |
127.2 |
120.0 |
| CT1 |
N |
HN1 |
116.4 |
120.0 |
| CG |
CB |
CA |
110.7 |
109.5 |
| CG |
CB |
HB2 |
109.0 |
109.4 |
| CG |
CB |
HB1 |
108.8 |
109.5 |
| CB |
CG |
SD |
114.8 |
109.5 |
| CB |
CG |
HG2 |
107.7 |
109.5 |
| CB |
CG |
HG1 |
106.5 |
109.5 |
| CA |
CB |
HB2 |
109.1 |
109.5 |
| CA |
CB |
HB1 |
108.8 |
109.5 |
| CB |
CA |
C |
102.1 |
109.5 |
| CB |
CA |
N |
118.8 |
109.5 |
| CB |
CA |
HA |
109.0 |
109.5 |
| HB2 |
CB |
HB1 |
110.5 |
109.5 |
| SD |
CG |
HG2 |
107.7 |
109.4 |
| SD |
CG |
HG1 |
106.5 |
109.5 |
| CG |
SD |
CE |
100.4 |
100.0 |
| HG2 |
CG |
HG1 |
113.7 |
109.5 |
| SD |
CE |
HE3 |
109.5 |
109.5 |
| SD |
CE |
HE2 |
109.5 |
109.5 |
| SD |
CE |
HE1 |
109.5 |
109.4 |
| HE3 |
CE |
HE2 |
109.5 |
109.5 |
| HE3 |
CE |
HE1 |
109.4 |
109.4 |
| HE2 |
CE |
HE1 |
109.5 |
109.5 |
| O |
C |
OXT |
119.5 |
120.0 |
| O |
C |
CA |
117.6 |
120.0 |
| OXT |
C |
CA |
122.9 |
120.0 |
| C |
OXT |
HO |
109.5 |
120.0 |
| C |
CA |
N |
111.1 |
109.5 |
| C |
CA |
HA |
117.0 |
109.5 |
| CA |
N |
HN1 |
116.4 |
120.0 |
| N |
CA |
HA |
99.6 |
109.5 |
Torsion Angles for AME
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HT23 |
CT2 |
CT1 |
HT22 |
240.0 |
120.0 |
| HT23 |
CT2 |
CT1 |
HT21 |
119.9 |
240.1 |
| HT22 |
CT2 |
CT1 |
HT21 |
240.0 |
120.0 |
| OT |
CT1 |
CT2 |
N |
180.7 |
180.0 |
| CT2 |
CT1 |
N |
CA |
158.2 |
180.0 |
| CT2 |
CT1 |
N |
HN1 |
338.2 |
359.9 |
| CT1 |
CT2 |
HT23 |
HT22 |
120.0 |
240.0 |
| CT1 |
CT2 |
HT23 |
HT21 |
240.0 |
120.0 |
| HT23 |
CT2 |
CT1 |
OT |
4.4 |
150.0 |
| HT23 |
CT2 |
CT1 |
N |
183.7 |
330.1 |
| HT22 |
CT2 |
HT23 |
HT21 |
120.0 |
240.0 |
| CT1 |
CT2 |
HT22 |
HT23 |
240.0 |
120.0 |
| CT1 |
CT2 |
HT22 |
HT21 |
120.0 |
240.0 |
| HT22 |
CT2 |
CT1 |
OT |
124.4 |
30.0 |
| HT22 |
CT2 |
CT1 |
N |
303.7 |
210.0 |
| HT23 |
CT2 |
HT22 |
HT21 |
240.0 |
120.0 |
| CT1 |
CT2 |
HT21 |
HT23 |
120.0 |
240.0 |
| CT1 |
CT2 |
HT21 |
HT22 |
240.0 |
120.0 |
| HT21 |
CT2 |
CT1 |
OT |
244.5 |
270.0 |
| HT21 |
CT2 |
CT1 |
N |
63.7 |
90.0 |
| HT23 |
CT2 |
HT21 |
HT22 |
120.0 |
240.0 |
| OT |
CT1 |
CT2 |
HT23 |
4.4 |
150.0 |
| OT |
CT1 |
CT2 |
HT22 |
124.4 |
30.0 |
| OT |
CT1 |
CT2 |
HT21 |
244.5 |
270.0 |
| CT2 |
CT1 |
OT |
N |
179.3 |
180.0 |
| OT |
CT1 |
N |
CA |
337.4 |
0.0 |
| OT |
CT1 |
N |
HN1 |
157.4 |
179.9 |
| N |
CT1 |
CT2 |
HT23 |
183.7 |
330.1 |
| N |
CT1 |
CT2 |
HT22 |
303.7 |
210.0 |
| N |
CT1 |
CT2 |
HT21 |
63.7 |
90.0 |
| CT2 |
CT1 |
N |
OT |
180.8 |
180.0 |
| CB |
CA |
N |
CT1 |
110.4 |
155.0 |
| C |
CA |
N |
CT1 |
228.4 |
275.0 |
| CA |
N |
CT1 |
HN1 |
180.0 |
180.1 |
| CT1 |
N |
CA |
HA |
352.3 |
35.0 |
| CA |
CB |
CG |
HB2 |
240.0 |
120.0 |
| CA |
CB |
CG |
HB1 |
119.5 |
240.0 |
| CG |
CB |
CA |
C |
163.1 |
175.0 |
| CG |
CB |
CA |
N |
285.7 |
295.0 |
| CG |
CB |
CA |
HA |
38.7 |
55.0 |
| HB2 |
CB |
CG |
HB1 |
239.5 |
120.0 |
| SD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| SD |
CG |
CB |
HG1 |
117.6 |
120.0 |
| CB |
CG |
SD |
CE |
191.5 |
180.0 |
| HG2 |
CG |
CB |
HG1 |
237.6 |
240.0 |
| CT1 |
N |
CA |
CB |
110.4 |
155.0 |
| CG |
CB |
CA |
HB2 |
120.0 |
240.0 |
| CG |
CB |
CA |
HB1 |
240.5 |
120.0 |
| CA |
CB |
CG |
SD |
147.2 |
180.0 |
| CA |
CB |
CG |
HG2 |
267.1 |
300.0 |
| CA |
CB |
CG |
HG1 |
29.5 |
60.0 |
| HB2 |
CB |
CA |
HB1 |
120.5 |
240.0 |
| O |
C |
CA |
CB |
337.6 |
120.0 |
| OXT |
C |
CA |
CB |
156.2 |
300.0 |
| C |
CA |
CB |
N |
237.4 |
240.0 |
| C |
CA |
CB |
HA |
124.4 |
120.0 |
| CB |
CA |
N |
HN1 |
290.4 |
335.1 |
| N |
CA |
CB |
HA |
247.0 |
240.0 |
| CG |
CB |
HB2 |
CA |
239.0 |
120.0 |
| CG |
CB |
HB2 |
HB1 |
119.5 |
240.0 |
| HB2 |
CB |
CG |
SD |
267.2 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
27.1 |
180.0 |
| HB2 |
CB |
CG |
HG1 |
149.5 |
300.0 |
| CA |
CB |
HB2 |
HB1 |
240.5 |
120.0 |
| HB2 |
CB |
CA |
C |
43.1 |
295.0 |
| HB2 |
CB |
CA |
N |
165.7 |
55.0 |
| HB2 |
CB |
CA |
HA |
278.7 |
175.0 |
| CG |
CB |
HB1 |
CA |
120.7 |
240.0 |
| CG |
CB |
HB1 |
HB2 |
240.3 |
120.0 |
| HB1 |
CB |
CG |
SD |
27.7 |
300.0 |
| HB1 |
CB |
CG |
HG2 |
147.7 |
60.0 |
| HB1 |
CB |
CG |
HG1 |
270.1 |
180.0 |
| CA |
CB |
HB1 |
HB2 |
119.7 |
240.0 |
| HB1 |
CB |
CA |
C |
282.6 |
55.0 |
| HB1 |
CB |
CA |
N |
45.1 |
175.0 |
| HB1 |
CB |
CA |
HA |
158.2 |
295.0 |
| SD |
CG |
CB |
CA |
147.2 |
180.0 |
| SD |
CG |
CB |
HB2 |
267.2 |
60.0 |
| SD |
CG |
CB |
HB1 |
27.7 |
300.0 |
| CB |
CG |
SD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
SD |
HG1 |
242.4 |
240.0 |
| HG2 |
CG |
SD |
HG1 |
122.4 |
120.0 |
| CG |
SD |
CE |
HE3 |
9.1 |
60.0 |
| CG |
SD |
CE |
HE2 |
129.1 |
300.0 |
| CG |
SD |
CE |
HE1 |
249.1 |
180.0 |
| HG2 |
CG |
CB |
CA |
267.1 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
27.1 |
180.0 |
| HG2 |
CG |
CB |
HB1 |
147.7 |
60.0 |
| CB |
CG |
HG2 |
SD |
235.6 |
240.0 |
| CB |
CG |
HG2 |
HG1 |
117.8 |
120.0 |
| SD |
CG |
HG2 |
HG1 |
242.2 |
240.0 |
| HG2 |
CG |
SD |
CE |
71.5 |
60.0 |
| HG1 |
CG |
CB |
CA |
29.5 |
60.0 |
| HG1 |
CG |
CB |
HB2 |
149.5 |
300.0 |
| HG1 |
CG |
CB |
HB1 |
270.1 |
180.0 |
| CB |
CG |
HG1 |
SD |
123.0 |
120.0 |
| CB |
CG |
HG1 |
HG2 |
241.5 |
240.0 |
| SD |
CG |
HG1 |
HG2 |
118.5 |
120.0 |
| HG1 |
CG |
SD |
CE |
309.1 |
300.0 |
| CE |
SD |
CG |
HG2 |
71.5 |
60.0 |
| CE |
SD |
CG |
HG1 |
309.1 |
300.0 |
| HE3 |
CE |
SD |
HE2 |
240.0 |
120.1 |
| HE3 |
CE |
SD |
HE1 |
120.0 |
240.1 |
| HE2 |
CE |
SD |
HE1 |
240.0 |
120.0 |
| SD |
CE |
HE3 |
HE2 |
120.0 |
239.9 |
| SD |
CE |
HE3 |
HE1 |
240.0 |
119.9 |
| HE2 |
CE |
HE3 |
HE1 |
120.0 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
240.0 |
120.1 |
| SD |
CE |
HE2 |
HE1 |
120.0 |
240.0 |
| HE3 |
CE |
HE2 |
HE1 |
240.0 |
119.9 |
| SD |
CE |
HE1 |
HE3 |
120.0 |
240.0 |
| SD |
CE |
HE1 |
HE2 |
240.0 |
120.0 |
| HE3 |
CE |
HE1 |
HE2 |
120.0 |
240.0 |
| CB |
CA |
C |
O |
337.6 |
120.0 |
| OXT |
C |
O |
CA |
181.3 |
180.0 |
| O |
C |
OXT |
HO |
360.0 |
360.0 |
| O |
C |
CA |
N |
209.9 |
0.0 |
| O |
C |
CA |
HA |
96.5 |
240.0 |
| CB |
CA |
C |
OXT |
156.2 |
300.0 |
| O |
C |
OXT |
CA |
178.6 |
180.0 |
| OXT |
C |
CA |
N |
28.6 |
180.0 |
| OXT |
C |
CA |
HA |
275.1 |
60.0 |
| CT1 |
N |
CA |
C |
228.4 |
275.0 |
| C |
CA |
CB |
HB2 |
43.1 |
295.0 |
| C |
CA |
CB |
HB1 |
282.6 |
55.0 |
| CB |
CA |
C |
N |
127.7 |
120.0 |
| CB |
CA |
C |
HA |
241.1 |
240.0 |
| O |
C |
CA |
OXT |
181.4 |
180.0 |
| CA |
C |
OXT |
HO |
181.4 |
180.0 |
| C |
CA |
N |
HN1 |
48.4 |
95.1 |
| N |
CA |
C |
HA |
113.4 |
120.0 |
| HO |
OXT |
C |
CA |
181.4 |
180.0 |
| CT1 |
N |
CA |
HN1 |
180.0 |
179.9 |
| N |
CA |
CB |
HB2 |
165.7 |
55.0 |
| N |
CA |
CB |
HB1 |
45.1 |
175.0 |
| CB |
CA |
N |
C |
242.0 |
240.0 |
| CB |
CA |
N |
HA |
118.0 |
120.0 |
| C |
CA |
N |
HA |
236.0 |
240.0 |
| CT1 |
N |
HN1 |
CA |
180.0 |
180.1 |
| HN1 |
N |
CA |
HA |
172.4 |
215.1 |
| HA |
CA |
CB |
HB2 |
278.7 |
175.0 |
| HA |
CA |
CB |
HB1 |
158.2 |
295.0 |
| CB |
CA |
HA |
C |
115.1 |
120.0 |
| CB |
CA |
HA |
N |
234.9 |
240.0 |
| C |
CA |
HA |
N |
119.7 |
120.0 |
| HA |
CA |
N |
HN1 |
172.4 |
215.1 |