PDB Chemical Component ALY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ALY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OH |
CH |
1.308 |
1.211 |
| CH |
CH3 |
1.507 |
1.507 |
| CH |
NZ |
1.415 |
1.347 |
| CH3 |
HH31 |
1.114 |
1.090 |
| CH3 |
HH32 |
1.115 |
1.090 |
| CH3 |
HH33 |
1.116 |
1.089 |
| NZ |
CE |
1.485 |
1.465 |
| NZ |
HZ |
1.020 |
0.970 |
| CE |
CD |
1.529 |
1.529 |
| CE |
HE3 |
1.115 |
1.090 |
| CE |
HE2 |
1.116 |
1.090 |
| CD |
CG |
1.524 |
1.528 |
| CD |
HD3 |
1.115 |
1.089 |
| CD |
HD2 |
1.115 |
1.090 |
| CG |
CB |
1.520 |
1.529 |
| CG |
HG3 |
1.115 |
1.090 |
| CG |
HG2 |
1.114 |
1.090 |
| CB |
CA |
1.524 |
1.530 |
| CB |
HB3 |
1.114 |
1.090 |
| CB |
HB2 |
1.115 |
1.090 |
| CA |
N |
1.446 |
1.468 |
| CA |
C |
1.498 |
1.507 |
| CA |
HA |
1.116 |
1.090 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.019 |
1.010 |
| C |
O |
1.306 |
1.208 |
| C |
OXT |
1.323 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for ALY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OH |
CH |
CH3 |
121.6 |
120.0 |
| OH |
CH |
NZ |
121.7 |
120.0 |
| CH3 |
CH |
NZ |
116.6 |
120.0 |
| CH |
CH3 |
HH31 |
121.7 |
109.4 |
| CH |
CH3 |
HH32 |
107.9 |
109.5 |
| CH |
CH3 |
HH33 |
107.9 |
109.5 |
| CH |
NZ |
CE |
111.8 |
120.0 |
| CH |
NZ |
HZ |
122.0 |
120.0 |
| HH31 |
CH3 |
HH32 |
107.9 |
109.5 |
| HH31 |
CH3 |
HH33 |
107.8 |
109.5 |
| HH32 |
CH3 |
HH33 |
102.0 |
109.5 |
| CE |
NZ |
HZ |
126.2 |
119.9 |
| NZ |
CE |
CD |
111.3 |
109.6 |
| NZ |
CE |
HE3 |
111.5 |
109.5 |
| NZ |
CE |
HE2 |
111.5 |
109.4 |
| CD |
CE |
HE3 |
111.5 |
109.5 |
| CD |
CE |
HE2 |
111.5 |
109.4 |
| CE |
CD |
CG |
111.5 |
109.5 |
| CE |
CD |
HD3 |
111.4 |
109.5 |
| CE |
CD |
HD2 |
111.4 |
109.4 |
| HE3 |
CE |
HE2 |
98.8 |
109.4 |
| CG |
CD |
HD3 |
111.5 |
109.6 |
| CG |
CD |
HD2 |
111.5 |
109.4 |
| CD |
CG |
CB |
110.0 |
109.5 |
| CD |
CG |
HG3 |
112.0 |
109.6 |
| CD |
CG |
HG2 |
112.0 |
109.4 |
| HD3 |
CD |
HD2 |
98.9 |
109.5 |
| CB |
CG |
HG3 |
112.0 |
109.5 |
| CB |
CG |
HG2 |
112.1 |
109.4 |
| CG |
CB |
CA |
114.1 |
109.6 |
| CG |
CB |
HB3 |
110.5 |
109.5 |
| CG |
CB |
HB2 |
110.5 |
109.4 |
| HG3 |
CG |
HG2 |
98.3 |
109.4 |
| CA |
CB |
HB3 |
110.5 |
109.5 |
| CA |
CB |
HB2 |
110.5 |
109.4 |
| CB |
CA |
N |
107.2 |
109.5 |
| CB |
CA |
C |
109.2 |
109.5 |
| CB |
CA |
HA |
111.1 |
109.4 |
| HB3 |
CB |
HB2 |
99.8 |
109.4 |
| N |
CA |
C |
109.2 |
109.4 |
| N |
CA |
HA |
111.1 |
109.5 |
| CA |
N |
H |
107.1 |
106.7 |
| CA |
N |
H2 |
113.0 |
106.7 |
| C |
CA |
HA |
109.1 |
109.5 |
| CA |
C |
O |
118.6 |
120.0 |
| CA |
C |
OXT |
119.7 |
120.0 |
| H |
N |
H2 |
113.1 |
106.7 |
| O |
C |
OXT |
121.7 |
120.0 |
| C |
OXT |
HXT |
119.7 |
120.0 |
Torsion Angles for ALY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CH3 |
CH |
OH |
NZ |
180.4 |
180.1 |
| OH |
CH |
CH3 |
HH31 |
180.0 |
360.0 |
| OH |
CH |
CH3 |
HH32 |
305.3 |
119.9 |
| OH |
CH |
CH3 |
HH33 |
54.7 |
240.0 |
| OH |
CH |
NZ |
CE |
0.1 |
0.0 |
| OH |
CH |
NZ |
HZ |
180.1 |
180.0 |
| OH |
CH |
CH3 |
NZ |
179.6 |
179.9 |
| CH3 |
CH |
NZ |
CE |
179.7 |
180.0 |
| CH3 |
CH |
NZ |
HZ |
359.7 |
360.0 |
| HH31 |
CH3 |
CH |
HH32 |
234.7 |
240.0 |
| HH31 |
CH3 |
CH |
HH33 |
125.3 |
120.0 |
| HH32 |
CH3 |
CH |
HH33 |
250.6 |
239.9 |
| OH |
CH |
NZ |
CH3 |
180.4 |
180.1 |
| NZ |
CH |
CH3 |
HH31 |
0.4 |
180.0 |
| NZ |
CH |
CH3 |
HH32 |
125.7 |
300.0 |
| NZ |
CH |
CH3 |
HH33 |
235.2 |
60.0 |
| CE |
NZ |
CH |
HZ |
180.0 |
180.0 |
| CH |
NZ |
CE |
CD |
95.4 |
180.0 |
| CH |
NZ |
CE |
HE3 |
220.7 |
300.1 |
| CH |
NZ |
CE |
HE2 |
330.1 |
60.0 |
| HH31 |
CH3 |
CH |
NZ |
0.4 |
180.0 |
| CH |
CH3 |
HH31 |
HH32 |
125.3 |
120.0 |
| CH |
CH3 |
HH31 |
HH33 |
234.7 |
240.0 |
| HH32 |
CH3 |
HH31 |
HH33 |
109.4 |
120.0 |
| HH32 |
CH3 |
CH |
NZ |
125.7 |
300.0 |
| CH |
CH3 |
HH32 |
HH31 |
226.9 |
240.1 |
| CH |
CH3 |
HH32 |
HH33 |
113.4 |
120.1 |
| HH31 |
CH3 |
HH32 |
HH33 |
246.6 |
240.0 |
| HH33 |
CH3 |
CH |
NZ |
235.2 |
60.0 |
| CH |
CH3 |
HH33 |
HH31 |
133.1 |
120.0 |
| CH |
CH3 |
HH33 |
HH32 |
246.6 |
240.0 |
| HH31 |
CH3 |
HH33 |
HH32 |
113.5 |
120.0 |
| CH |
NZ |
CE |
HZ |
180.0 |
180.0 |
| CD |
CE |
NZ |
HE3 |
234.7 |
239.8 |
| CD |
CE |
NZ |
HE2 |
125.3 |
120.0 |
| NZ |
CE |
CD |
CG |
170.0 |
180.0 |
| NZ |
CE |
CD |
HD3 |
295.3 |
300.1 |
| NZ |
CE |
CD |
HD2 |
44.8 |
60.1 |
| HE3 |
CE |
NZ |
HE2 |
250.6 |
240.1 |
| CH |
NZ |
HZ |
CE |
180.0 |
180.0 |
| HZ |
NZ |
CE |
CD |
275.3 |
360.0 |
| HZ |
NZ |
CE |
HE3 |
40.6 |
120.1 |
| HZ |
NZ |
CE |
HE2 |
150.1 |
240.0 |
| CD |
CE |
NZ |
HZ |
275.3 |
360.0 |
| NZ |
CE |
CD |
HE3 |
125.3 |
120.1 |
| NZ |
CE |
CD |
HE2 |
234.8 |
240.0 |
| HE3 |
CE |
CD |
HE2 |
109.4 |
119.9 |
| CG |
CD |
CE |
HD3 |
234.8 |
239.9 |
| CG |
CD |
CE |
HD2 |
125.3 |
119.9 |
| CE |
CD |
CG |
CB |
275.9 |
180.0 |
| CE |
CD |
CG |
HG3 |
41.2 |
300.1 |
| CE |
CD |
CG |
HG2 |
150.6 |
60.0 |
| HD3 |
CD |
CE |
HD2 |
250.5 |
240.0 |
| HE3 |
CE |
NZ |
HZ |
40.6 |
120.1 |
| NZ |
CE |
HE3 |
CD |
234.8 |
239.8 |
| NZ |
CE |
HE3 |
HE2 |
117.4 |
119.9 |
| CD |
CE |
HE3 |
HE2 |
242.6 |
240.1 |
| HE3 |
CE |
CD |
CG |
44.7 |
59.9 |
| HE3 |
CE |
CD |
HD3 |
170.0 |
180.0 |
| HE3 |
CE |
CD |
HD2 |
279.4 |
300.0 |
| HE2 |
CE |
NZ |
HZ |
150.1 |
240.0 |
| NZ |
CE |
HE2 |
CD |
125.2 |
120.1 |
| NZ |
CE |
HE2 |
HE3 |
242.6 |
240.1 |
| CD |
CE |
HE2 |
HE3 |
117.4 |
120.0 |
| HE2 |
CE |
CD |
CG |
295.3 |
300.0 |
| HE2 |
CE |
CD |
HD3 |
60.5 |
60.1 |
| HE2 |
CE |
CD |
HD2 |
170.0 |
180.0 |
| CG |
CD |
CE |
HE3 |
44.7 |
59.9 |
| CG |
CD |
CE |
HE2 |
295.3 |
300.0 |
| CE |
CD |
CG |
HD3 |
125.2 |
120.1 |
| CE |
CD |
CG |
HD2 |
234.8 |
240.1 |
| HD3 |
CD |
CG |
HD2 |
109.5 |
120.0 |
| CB |
CG |
CD |
HG3 |
234.7 |
239.9 |
| CB |
CG |
CD |
HG2 |
125.3 |
120.0 |
| CD |
CG |
CB |
CA |
168.1 |
180.0 |
| CD |
CG |
CB |
HB3 |
293.4 |
300.1 |
| CD |
CG |
CB |
HB2 |
42.8 |
60.0 |
| HG3 |
CG |
CD |
HG2 |
250.6 |
240.1 |
| HD3 |
CD |
CE |
HE3 |
170.0 |
180.0 |
| HD3 |
CD |
CE |
HE2 |
60.5 |
60.1 |
| CE |
CD |
HD3 |
CG |
234.7 |
239.9 |
| CE |
CD |
HD3 |
HD2 |
117.3 |
119.9 |
| CG |
CD |
HD3 |
HD2 |
242.6 |
240.0 |
| HD3 |
CD |
CG |
CB |
150.7 |
59.9 |
| HD3 |
CD |
CG |
HG3 |
276.0 |
180.0 |
| HD3 |
CD |
CG |
HG2 |
25.4 |
299.9 |
| HD2 |
CD |
CE |
HE3 |
279.4 |
300.0 |
| HD2 |
CD |
CE |
HE2 |
170.0 |
180.0 |
| CE |
CD |
HD2 |
CG |
125.3 |
120.0 |
| CE |
CD |
HD2 |
HD3 |
242.7 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
117.4 |
120.1 |
| HD2 |
CD |
CG |
CB |
41.2 |
299.9 |
| HD2 |
CD |
CG |
HG3 |
166.4 |
60.0 |
| HD2 |
CD |
CG |
HG2 |
275.8 |
180.0 |
| CB |
CG |
CD |
HD3 |
150.7 |
59.9 |
| CB |
CG |
CD |
HD2 |
41.2 |
299.9 |
| CD |
CG |
CB |
HG3 |
125.3 |
120.2 |
| CD |
CG |
CB |
HG2 |
234.7 |
240.0 |
| HG3 |
CG |
CB |
HG2 |
109.5 |
119.9 |
| CA |
CB |
CG |
HB3 |
234.7 |
239.9 |
| CA |
CB |
CG |
HB2 |
125.2 |
120.0 |
| CG |
CB |
CA |
N |
172.7 |
300.0 |
| CG |
CB |
CA |
C |
54.5 |
180.0 |
| CG |
CB |
CA |
HA |
294.2 |
60.0 |
| HB3 |
CB |
CG |
HB2 |
250.5 |
240.1 |
| HG3 |
CG |
CD |
HD3 |
276.0 |
180.0 |
| HG3 |
CG |
CD |
HD2 |
166.4 |
60.0 |
| CD |
CG |
HG3 |
CB |
235.9 |
239.9 |
| CD |
CG |
HG3 |
HG2 |
117.9 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
242.0 |
240.1 |
| HG3 |
CG |
CB |
CA |
42.8 |
59.9 |
| HG3 |
CG |
CB |
HB3 |
168.1 |
179.9 |
| HG3 |
CG |
CB |
HB2 |
277.6 |
299.9 |
| HG2 |
CG |
CD |
HD3 |
25.4 |
299.9 |
| HG2 |
CG |
CD |
HD2 |
275.8 |
180.0 |
| CD |
CG |
HG2 |
CB |
124.1 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
242.1 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
117.9 |
119.9 |
| HG2 |
CG |
CB |
CA |
293.4 |
300.0 |
| HG2 |
CG |
CB |
HB3 |
58.6 |
60.1 |
| HG2 |
CG |
CB |
HB2 |
168.1 |
180.0 |
| CA |
CB |
CG |
HG3 |
42.8 |
59.9 |
| CA |
CB |
CG |
HG2 |
293.4 |
300.0 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.1 |
| CG |
CB |
CA |
HB2 |
234.8 |
240.0 |
| HB3 |
CB |
CA |
HB2 |
109.6 |
119.9 |
| N |
CA |
CB |
C |
118.2 |
120.0 |
| N |
CA |
CB |
HA |
238.5 |
240.0 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
54.8 |
53.7 |
| C |
CA |
CB |
HA |
120.3 |
120.0 |
| CB |
CA |
C |
O |
68.3 |
90.0 |
| CB |
CA |
C |
OXT |
249.9 |
270.0 |
| HB3 |
CB |
CG |
HG3 |
168.1 |
179.9 |
| HB3 |
CB |
CG |
HG2 |
58.6 |
60.1 |
| CG |
CB |
HB3 |
CA |
232.7 |
239.9 |
| CG |
CB |
HB3 |
HB2 |
116.3 |
119.9 |
| CA |
CB |
HB3 |
HB2 |
243.6 |
240.1 |
| HB3 |
CB |
CA |
N |
47.5 |
180.0 |
| HB3 |
CB |
CA |
C |
289.3 |
60.0 |
| HB3 |
CB |
CA |
HA |
169.0 |
300.0 |
| HB2 |
CB |
CG |
HG3 |
277.6 |
299.9 |
| HB2 |
CB |
CG |
HG2 |
168.1 |
180.0 |
| CG |
CB |
HB2 |
CA |
127.2 |
120.1 |
| CG |
CB |
HB2 |
HB3 |
243.7 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.4 |
119.9 |
| HB2 |
CB |
CA |
N |
297.9 |
60.0 |
| HB2 |
CB |
CA |
C |
179.7 |
300.0 |
| HB2 |
CB |
CA |
HA |
59.4 |
180.0 |
| N |
CA |
CB |
HB3 |
47.5 |
180.0 |
| N |
CA |
CB |
HB2 |
297.9 |
60.0 |
| CB |
CA |
N |
C |
241.8 |
240.0 |
| CB |
CA |
N |
HA |
121.5 |
120.0 |
| C |
CA |
N |
HA |
239.6 |
240.0 |
| N |
CA |
C |
O |
311.5 |
330.0 |
| N |
CA |
C |
OXT |
133.0 |
150.0 |
| H |
N |
CA |
H2 |
125.2 |
246.2 |
| C |
CA |
CB |
HB3 |
289.3 |
60.0 |
| C |
CA |
CB |
HB2 |
179.7 |
300.0 |
| CB |
CA |
C |
N |
116.9 |
120.0 |
| CB |
CA |
C |
HA |
238.4 |
240.0 |
| N |
CA |
C |
HA |
121.6 |
120.0 |
| C |
CA |
N |
H |
298.1 |
60.0 |
| C |
CA |
N |
H2 |
172.9 |
173.8 |
| O |
C |
CA |
OXT |
178.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
CB |
HB3 |
169.0 |
300.0 |
| HA |
CA |
CB |
HB2 |
59.4 |
180.0 |
| CB |
CA |
HA |
N |
240.8 |
240.0 |
| CB |
CA |
HA |
C |
120.4 |
120.0 |
| N |
CA |
HA |
C |
239.5 |
240.0 |
| HA |
CA |
N |
H |
58.5 |
180.0 |
| HA |
CA |
N |
H2 |
293.3 |
293.8 |
| HA |
CA |
C |
O |
189.9 |
210.0 |
| HA |
CA |
C |
OXT |
11.4 |
30.0 |
| H |
N |
CA |
C |
298.1 |
60.0 |
| H |
N |
CA |
HA |
58.5 |
180.0 |
| CA |
N |
H |
H2 |
234.8 |
113.8 |
| H2 |
N |
CA |
C |
172.9 |
173.8 |
| H2 |
N |
CA |
HA |
293.3 |
293.8 |
| CA |
N |
H2 |
H |
121.9 |
246.2 |
| O |
C |
CA |
HA |
189.9 |
210.0 |
| CA |
C |
O |
OXT |
181.6 |
180.0 |
| O |
C |
OXT |
HXT |
1.6 |
360.0 |
| OXT |
C |
CA |
HA |
11.4 |
30.0 |
| CA |
C |
OXT |
O |
178.4 |
180.0 |