PDB Chemical Component ALL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ALL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.548 |
1.531 |
C1 |
O1 |
1.410 |
1.430 |
C1 |
O5 |
1.414 |
1.429 |
C1 |
H1 |
1.101 |
1.090 |
C2 |
C3 |
1.526 |
1.531 |
C2 |
O2 |
1.416 |
1.430 |
C2 |
H2 |
1.099 |
1.091 |
C3 |
C4 |
1.534 |
1.532 |
C3 |
O3 |
1.469 |
1.429 |
C3 |
H3 |
1.100 |
1.090 |
C4 |
C5 |
1.535 |
1.532 |
C4 |
O4 |
1.432 |
1.429 |
C4 |
H4 |
1.100 |
1.090 |
C5 |
C6 |
1.495 |
1.529 |
C5 |
O5 |
1.422 |
1.428 |
C5 |
H5 |
1.100 |
1.090 |
C6 |
O6 |
1.453 |
1.430 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.091 |
O1 |
HO1 |
0.950 |
0.967 |
O2 |
HO2 |
0.950 |
0.966 |
O3 |
HO3 |
0.950 |
0.966 |
O4 |
HO4 |
0.950 |
0.967 |
O6 |
HO6 |
0.950 |
0.966 |
Bond Angles for ALL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
111.9 |
109.5 |
C2 |
C1 |
O5 |
108.2 |
109.4 |
C2 |
C1 |
H1 |
107.7 |
109.4 |
C1 |
C2 |
C3 |
110.0 |
109.2 |
C1 |
C2 |
O2 |
109.2 |
109.5 |
C1 |
C2 |
H2 |
108.5 |
109.5 |
O1 |
C1 |
O5 |
110.2 |
109.5 |
O1 |
C1 |
H1 |
109.4 |
109.5 |
C1 |
O1 |
HO1 |
109.5 |
113.9 |
O5 |
C1 |
H1 |
109.4 |
109.5 |
C1 |
O5 |
C5 |
114.3 |
114.1 |
C3 |
C2 |
O2 |
109.9 |
109.5 |
C3 |
C2 |
H2 |
108.8 |
109.5 |
C2 |
C3 |
C4 |
109.0 |
109.1 |
C2 |
C3 |
O3 |
107.8 |
109.6 |
C2 |
C3 |
H3 |
110.3 |
109.6 |
O2 |
C2 |
H2 |
110.3 |
109.6 |
C2 |
O2 |
HO2 |
109.5 |
114.0 |
C4 |
C3 |
O3 |
108.5 |
109.6 |
C4 |
C3 |
H3 |
110.2 |
109.5 |
C3 |
C4 |
C5 |
108.0 |
109.1 |
C3 |
C4 |
O4 |
112.2 |
109.6 |
C3 |
C4 |
H4 |
109.2 |
109.5 |
O3 |
C3 |
H3 |
111.1 |
109.6 |
C3 |
O3 |
HO3 |
109.5 |
114.0 |
C5 |
C4 |
O4 |
107.4 |
109.5 |
C5 |
C4 |
H4 |
109.2 |
109.5 |
C4 |
C5 |
C6 |
115.9 |
109.4 |
C4 |
C5 |
O5 |
111.2 |
109.4 |
C4 |
C5 |
H5 |
105.7 |
109.5 |
O4 |
C4 |
H4 |
110.6 |
109.6 |
C4 |
O4 |
HO4 |
109.5 |
114.0 |
C6 |
C5 |
O5 |
110.3 |
109.5 |
C6 |
C5 |
H5 |
106.1 |
109.5 |
C5 |
C6 |
O6 |
110.9 |
109.5 |
C5 |
C6 |
H61 |
109.1 |
109.5 |
C5 |
C6 |
H62 |
109.1 |
109.5 |
O5 |
C5 |
H5 |
107.0 |
109.5 |
O6 |
C6 |
H61 |
109.1 |
109.5 |
O6 |
C6 |
H62 |
109.1 |
109.4 |
C6 |
O6 |
HO6 |
109.5 |
114.0 |
H61 |
C6 |
H62 |
109.5 |
109.4 |
Torsion Angles for ALL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
121.5 |
120.0 |
O1 |
C1 |
C2 |
H1 |
239.7 |
240.0 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
O5 |
C1 |
C2 |
H1 |
118.2 |
120.0 |
C2 |
C1 |
O5 |
C5 |
299.5 |
298.8 |
C3 |
C2 |
C1 |
O2 |
239.3 |
240.1 |
C3 |
C2 |
C1 |
H2 |
119.0 |
119.9 |
C1 |
C2 |
C3 |
C4 |
302.3 |
303.0 |
C1 |
C2 |
C3 |
O3 |
59.8 |
62.9 |
C1 |
C2 |
C3 |
H3 |
181.2 |
183.2 |
O2 |
C2 |
C1 |
H2 |
239.7 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
59.9 |
C2 |
C1 |
O1 |
O5 |
239.6 |
240.0 |
C2 |
C1 |
O1 |
H1 |
119.3 |
119.9 |
O1 |
C1 |
C2 |
C3 |
179.6 |
177.6 |
O1 |
C1 |
C2 |
O2 |
300.3 |
297.6 |
O1 |
C1 |
C2 |
H2 |
60.7 |
57.7 |
O5 |
C1 |
O1 |
H1 |
239.7 |
239.9 |
O1 |
C1 |
O5 |
C5 |
176.9 |
178.8 |
C2 |
C1 |
O5 |
O1 |
122.6 |
120.0 |
C2 |
C1 |
O5 |
H1 |
243.0 |
240.1 |
O5 |
C1 |
C2 |
C3 |
58.1 |
57.6 |
O5 |
C1 |
C2 |
O2 |
178.8 |
177.5 |
O5 |
C1 |
C2 |
H2 |
299.1 |
297.7 |
O1 |
C1 |
O5 |
H1 |
120.4 |
120.1 |
O5 |
C1 |
O1 |
HO1 |
300.4 |
299.9 |
C4 |
C5 |
O5 |
C1 |
61.5 |
61.2 |
C6 |
C5 |
O5 |
C1 |
191.6 |
181.1 |
C1 |
O5 |
C5 |
H5 |
306.6 |
301.2 |
C2 |
C1 |
H1 |
O1 |
238.1 |
240.0 |
C2 |
C1 |
H1 |
O5 |
117.3 |
119.9 |
H1 |
C1 |
C2 |
C3 |
299.9 |
297.6 |
H1 |
C1 |
C2 |
O2 |
60.7 |
57.5 |
H1 |
C1 |
C2 |
H2 |
181.0 |
177.7 |
O1 |
C1 |
H1 |
O5 |
239.2 |
239.9 |
H1 |
C1 |
O1 |
HO1 |
60.7 |
60.1 |
H1 |
C1 |
O5 |
C5 |
56.5 |
58.7 |
C3 |
C2 |
C1 |
O1 |
179.6 |
177.6 |
C3 |
C2 |
C1 |
O5 |
58.1 |
57.6 |
C3 |
C2 |
C1 |
H1 |
299.9 |
297.6 |
C1 |
C2 |
C3 |
O2 |
120.3 |
119.9 |
C1 |
C2 |
C3 |
H2 |
241.2 |
240.1 |
O2 |
C2 |
C3 |
H2 |
120.9 |
120.2 |
C3 |
C2 |
O2 |
HO2 |
300.8 |
179.7 |
C4 |
C3 |
C2 |
O3 |
242.4 |
240.1 |
C4 |
C3 |
C2 |
H3 |
121.1 |
119.8 |
C2 |
C3 |
C4 |
C5 |
55.9 |
57.0 |
C2 |
C3 |
C4 |
O4 |
174.1 |
176.9 |
C2 |
C3 |
C4 |
H4 |
297.2 |
297.1 |
O3 |
C3 |
C2 |
H3 |
238.6 |
239.7 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
60.0 |
O2 |
C2 |
C1 |
O1 |
300.3 |
297.6 |
O2 |
C2 |
C1 |
O5 |
178.8 |
177.5 |
O2 |
C2 |
C1 |
H1 |
60.7 |
57.5 |
C1 |
C2 |
O2 |
C3 |
239.2 |
240.3 |
C1 |
C2 |
O2 |
H2 |
119.2 |
120.1 |
C3 |
C2 |
O2 |
H2 |
240.0 |
239.9 |
O2 |
C2 |
C3 |
C4 |
182.0 |
183.1 |
O2 |
C2 |
C3 |
O3 |
299.5 |
303.0 |
O2 |
C2 |
C3 |
H3 |
60.9 |
63.3 |
H2 |
C2 |
C1 |
O1 |
60.7 |
57.7 |
H2 |
C2 |
C1 |
O5 |
299.1 |
297.7 |
H2 |
C2 |
C1 |
H1 |
181.0 |
177.7 |
C1 |
C2 |
H2 |
C3 |
119.7 |
119.7 |
C1 |
C2 |
H2 |
O2 |
240.4 |
239.8 |
C3 |
C2 |
H2 |
O2 |
120.7 |
120.1 |
H2 |
C2 |
C3 |
C4 |
61.1 |
62.9 |
H2 |
C2 |
C3 |
O3 |
178.6 |
182.8 |
H2 |
C2 |
C3 |
H3 |
300.0 |
303.1 |
H2 |
C2 |
O2 |
HO2 |
60.8 |
299.8 |
C4 |
C3 |
C2 |
O2 |
182.0 |
183.1 |
C4 |
C3 |
C2 |
H2 |
61.1 |
62.9 |
C2 |
C3 |
C4 |
O3 |
117.1 |
119.9 |
C2 |
C3 |
C4 |
H3 |
238.9 |
240.1 |
O3 |
C3 |
C4 |
H3 |
121.8 |
120.2 |
C4 |
C3 |
O3 |
HO3 |
297.9 |
179.6 |
C5 |
C4 |
C3 |
O4 |
241.8 |
240.1 |
C5 |
C4 |
C3 |
H4 |
118.7 |
119.9 |
C3 |
C4 |
C5 |
C6 |
176.2 |
182.4 |
C3 |
C4 |
C5 |
O5 |
303.2 |
302.4 |
C3 |
C4 |
C5 |
H5 |
59.0 |
62.4 |
O4 |
C4 |
C3 |
H4 |
236.9 |
239.7 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
60.0 |
O3 |
C3 |
C2 |
O2 |
299.5 |
303.0 |
O3 |
C3 |
C2 |
H2 |
178.6 |
182.8 |
C2 |
C3 |
O3 |
C4 |
242.1 |
240.4 |
C2 |
C3 |
O3 |
H3 |
120.9 |
120.3 |
C4 |
C3 |
O3 |
H3 |
238.8 |
239.9 |
O3 |
C3 |
C4 |
C5 |
298.8 |
297.1 |
O3 |
C3 |
C4 |
O4 |
57.0 |
56.9 |
O3 |
C3 |
C4 |
H4 |
180.1 |
177.2 |
H3 |
C3 |
C2 |
O2 |
60.9 |
63.3 |
H3 |
C3 |
C2 |
H2 |
300.0 |
303.1 |
C2 |
C3 |
H3 |
C4 |
120.4 |
119.6 |
C2 |
C3 |
H3 |
O3 |
240.6 |
239.7 |
C4 |
C3 |
H3 |
O3 |
120.2 |
120.2 |
H3 |
C3 |
C4 |
C5 |
177.0 |
176.9 |
H3 |
C3 |
C4 |
O4 |
295.2 |
296.7 |
H3 |
C3 |
C4 |
H4 |
58.3 |
57.0 |
H3 |
C3 |
O3 |
HO3 |
59.1 |
299.8 |
C1 |
O5 |
C5 |
C4 |
61.5 |
61.2 |
C5 |
C4 |
C3 |
O3 |
298.8 |
297.1 |
C5 |
C4 |
C3 |
H3 |
177.0 |
176.9 |
C3 |
C4 |
C5 |
O4 |
121.2 |
119.9 |
C3 |
C4 |
C5 |
H4 |
241.3 |
240.1 |
O4 |
C4 |
C5 |
H4 |
120.1 |
120.2 |
C5 |
C4 |
O4 |
HO4 |
298.6 |
179.6 |
C6 |
C5 |
C4 |
O5 |
232.9 |
240.0 |
C6 |
C5 |
C4 |
H5 |
117.2 |
120.0 |
C4 |
C5 |
C6 |
O6 |
61.6 |
185.0 |
C4 |
C5 |
C6 |
H61 |
181.8 |
305.0 |
C4 |
C5 |
C6 |
H62 |
301.4 |
65.0 |
O5 |
C5 |
C4 |
H5 |
244.3 |
240.0 |
O4 |
C4 |
C3 |
O3 |
57.0 |
56.9 |
O4 |
C4 |
C3 |
H3 |
295.2 |
296.7 |
C3 |
C4 |
O4 |
C5 |
241.4 |
240.4 |
C3 |
C4 |
O4 |
H4 |
122.3 |
120.2 |
C5 |
C4 |
O4 |
H4 |
240.8 |
239.9 |
O4 |
C4 |
C5 |
C6 |
54.9 |
62.5 |
O4 |
C4 |
C5 |
O5 |
182.0 |
182.5 |
O4 |
C4 |
C5 |
H5 |
297.7 |
302.5 |
H4 |
C4 |
C3 |
O3 |
180.1 |
177.2 |
H4 |
C4 |
C3 |
H3 |
58.3 |
57.0 |
C3 |
C4 |
H4 |
C5 |
117.9 |
119.6 |
C3 |
C4 |
H4 |
O4 |
236.0 |
239.8 |
C5 |
C4 |
H4 |
O4 |
118.1 |
120.1 |
H4 |
C4 |
C5 |
C6 |
294.9 |
302.3 |
H4 |
C4 |
C5 |
O5 |
61.9 |
62.3 |
H4 |
C4 |
C5 |
H5 |
177.7 |
182.3 |
H4 |
C4 |
O4 |
HO4 |
57.7 |
299.8 |
C1 |
O5 |
C5 |
C6 |
191.6 |
181.1 |
C6 |
C5 |
C4 |
O4 |
54.9 |
62.5 |
C6 |
C5 |
C4 |
H4 |
294.9 |
302.3 |
C4 |
C5 |
C6 |
O5 |
127.5 |
119.9 |
C4 |
C5 |
C6 |
H5 |
243.0 |
240.0 |
O5 |
C5 |
C6 |
H5 |
115.6 |
120.1 |
O6 |
C6 |
C5 |
H61 |
239.8 |
240.0 |
O6 |
C6 |
C5 |
H62 |
120.2 |
119.9 |
C5 |
C6 |
O6 |
HO6 |
180.0 |
180.0 |
H61 |
C6 |
C5 |
H62 |
240.4 |
240.0 |
C5 |
O5 |
C1 |
H1 |
56.5 |
58.7 |
O5 |
C5 |
C4 |
O4 |
182.0 |
182.5 |
O5 |
C5 |
C4 |
H4 |
61.9 |
62.3 |
C4 |
C5 |
O5 |
C6 |
230.0 |
240.1 |
C4 |
C5 |
O5 |
H5 |
114.9 |
120.0 |
C6 |
C5 |
O5 |
H5 |
245.0 |
239.9 |
O5 |
C5 |
C6 |
O6 |
294.1 |
65.1 |
O5 |
C5 |
C6 |
H61 |
54.3 |
185.1 |
O5 |
C5 |
C6 |
H62 |
173.9 |
305.1 |
H5 |
C5 |
C4 |
O4 |
297.7 |
302.5 |
H5 |
C5 |
C4 |
H4 |
177.7 |
182.3 |
C4 |
C5 |
H5 |
C6 |
123.6 |
120.0 |
C4 |
C5 |
H5 |
O5 |
241.4 |
240.1 |
C6 |
C5 |
H5 |
O5 |
117.8 |
120.1 |
H5 |
C5 |
C6 |
O6 |
178.5 |
305.0 |
H5 |
C5 |
C6 |
H61 |
298.7 |
65.0 |
H5 |
C5 |
C6 |
H62 |
58.3 |
185.0 |
O6 |
C6 |
C5 |
O5 |
294.1 |
65.1 |
O6 |
C6 |
C5 |
H5 |
178.5 |
305.0 |
C5 |
C6 |
O6 |
H61 |
120.2 |
120.1 |
C5 |
C6 |
O6 |
H62 |
239.8 |
240.0 |
H61 |
C6 |
O6 |
H62 |
119.6 |
119.9 |
H61 |
C6 |
C5 |
O5 |
54.3 |
185.1 |
H61 |
C6 |
C5 |
H5 |
298.7 |
65.0 |
C5 |
C6 |
H61 |
O6 |
238.7 |
240.0 |
C5 |
C6 |
H61 |
H62 |
119.4 |
120.1 |
O6 |
C6 |
H61 |
H62 |
240.7 |
240.1 |
H61 |
C6 |
O6 |
HO6 |
59.8 |
59.9 |
H62 |
C6 |
C5 |
O5 |
173.9 |
305.1 |
H62 |
C6 |
C5 |
H5 |
58.3 |
185.0 |
C5 |
C6 |
H62 |
O6 |
121.3 |
120.0 |
C5 |
C6 |
H62 |
H61 |
240.6 |
239.9 |
O6 |
C6 |
H62 |
H61 |
119.4 |
119.9 |
H62 |
C6 |
O6 |
HO6 |
300.2 |
300.0 |
HO1 |
O1 |
C1 |
O5 |
300.4 |
299.9 |
HO1 |
O1 |
C1 |
H1 |
60.7 |
60.1 |
HO2 |
O2 |
C2 |
H2 |
60.8 |
299.8 |
HO3 |
O3 |
C3 |
H3 |
59.1 |
299.8 |
HO4 |
O4 |
C4 |
H4 |
57.7 |
299.8 |
HO6 |
O6 |
C6 |
H61 |
59.8 |
59.9 |
HO6 |
O6 |
C6 |
H62 |
300.2 |
300.0 |