PDB Chemical Component AL9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AL9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
S1 |
1.740 |
1.762 |
| C3 |
C4 |
1.378 |
1.355 |
| C3 |
S2 |
1.736 |
1.784 |
| C9 |
C10 |
1.513 |
1.507 |
| C9 |
N8 |
1.461 |
1.464 |
| C9 |
H91 |
1.116 |
1.090 |
| C9 |
H92 |
1.114 |
1.090 |
| C10 |
C11 |
1.397 |
1.381 |
| C10 |
C15 |
1.392 |
1.383 |
| C11 |
C12 |
1.391 |
1.382 |
| C11 |
H11 |
1.104 |
1.080 |
| C12 |
C13 |
1.405 |
1.388 |
| C12 |
H12 |
1.104 |
1.079 |
| C13 |
C14 |
1.391 |
1.387 |
| C13 |
O16 |
1.310 |
1.359 |
| C14 |
C15 |
1.387 |
1.381 |
| C14 |
H14 |
1.103 |
1.080 |
| C15 |
H15 |
1.103 |
1.081 |
| O2A |
S1 |
1.422 |
1.421 |
| O1A |
S1 |
1.418 |
1.420 |
| N21 |
S1 |
1.581 |
1.656 |
| N21 |
HNL1 |
1.020 |
0.970 |
| N21 |
HNL2 |
1.020 |
0.969 |
| C4 |
C5 |
1.380 |
1.383 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.380 |
1.354 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
S2 |
1.712 |
1.785 |
| C6 |
S7 |
1.725 |
1.762 |
| S7 |
O3B |
1.429 |
1.421 |
| S7 |
O4B |
1.426 |
1.420 |
| S7 |
N8 |
1.492 |
1.657 |
| N8 |
HN8 |
1.021 |
0.970 |
| O16 |
C17 |
1.447 |
1.429 |
| C17 |
H171 |
1.114 |
1.090 |
| C17 |
H172 |
1.115 |
1.090 |
| C17 |
H173 |
1.115 |
1.090 |
Bond Angles for AL9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C3 |
C4 |
122.2 |
129.0 |
| S1 |
C3 |
S2 |
123.8 |
129.1 |
| C3 |
S1 |
O2A |
103.4 |
105.7 |
| C3 |
S1 |
O1A |
107.7 |
105.8 |
| C3 |
S1 |
N21 |
106.4 |
107.4 |
| C4 |
C3 |
S2 |
113.9 |
102.0 |
| C3 |
C4 |
C5 |
111.7 |
119.0 |
| C3 |
C4 |
H4 |
124.1 |
120.6 |
| C3 |
S2 |
C6 |
88.2 |
98.1 |
| C10 |
C9 |
N8 |
113.1 |
109.5 |
| C10 |
C9 |
H91 |
110.8 |
109.5 |
| C10 |
C9 |
H92 |
110.9 |
109.5 |
| C9 |
C10 |
C11 |
121.2 |
119.9 |
| C9 |
C10 |
C15 |
118.4 |
120.0 |
| N8 |
C9 |
H91 |
110.9 |
109.5 |
| N8 |
C9 |
H92 |
110.9 |
109.4 |
| C9 |
N8 |
S7 |
113.0 |
120.1 |
| C9 |
N8 |
HN8 |
110.9 |
120.0 |
| H91 |
C9 |
H92 |
99.4 |
109.4 |
| C11 |
C10 |
C15 |
120.4 |
120.1 |
| C10 |
C11 |
C12 |
119.2 |
120.1 |
| C10 |
C11 |
H11 |
120.6 |
120.0 |
| C10 |
C15 |
C14 |
120.1 |
120.1 |
| C10 |
C15 |
H15 |
120.1 |
119.9 |
| C12 |
C11 |
H11 |
120.2 |
119.9 |
| C11 |
C12 |
C13 |
120.8 |
119.9 |
| C11 |
C12 |
H12 |
119.1 |
120.0 |
| C13 |
C12 |
H12 |
120.1 |
120.1 |
| C12 |
C13 |
C14 |
119.0 |
119.9 |
| C12 |
C13 |
O16 |
122.4 |
120.0 |
| C14 |
C13 |
O16 |
118.6 |
120.0 |
| C13 |
C14 |
C15 |
120.6 |
119.9 |
| C13 |
C14 |
H14 |
119.8 |
120.0 |
| C13 |
O16 |
C17 |
114.5 |
106.8 |
| C15 |
C14 |
H14 |
119.6 |
120.1 |
| C14 |
C15 |
H15 |
119.8 |
120.0 |
| O2A |
S1 |
O1A |
110.9 |
125.4 |
| O2A |
S1 |
N21 |
114.8 |
105.7 |
| O1A |
S1 |
N21 |
112.9 |
105.8 |
| S1 |
N21 |
HNL1 |
106.4 |
120.0 |
| S1 |
N21 |
HNL2 |
113.4 |
120.0 |
| HNL1 |
N21 |
HNL2 |
113.4 |
120.0 |
| C5 |
C4 |
H4 |
124.2 |
120.5 |
| C4 |
C5 |
C6 |
111.7 |
119.0 |
| C4 |
C5 |
H5 |
124.1 |
120.5 |
| C6 |
C5 |
H5 |
124.2 |
120.5 |
| C5 |
C6 |
S2 |
114.6 |
102.0 |
| C5 |
C6 |
S7 |
128.6 |
129.0 |
| S2 |
C6 |
S7 |
116.7 |
129.0 |
| C6 |
S7 |
O3B |
107.9 |
105.8 |
| C6 |
S7 |
O4B |
108.5 |
105.8 |
| C6 |
S7 |
N8 |
114.3 |
107.3 |
| O3B |
S7 |
O4B |
106.9 |
125.4 |
| O3B |
S7 |
N8 |
108.0 |
105.8 |
| O4B |
S7 |
N8 |
111.0 |
105.7 |
| S7 |
N8 |
HN8 |
110.9 |
119.9 |
| O16 |
C17 |
H171 |
114.5 |
109.5 |
| O16 |
C17 |
H172 |
110.4 |
109.4 |
| O16 |
C17 |
H173 |
110.4 |
109.5 |
| H171 |
C17 |
H172 |
110.5 |
109.5 |
| H171 |
C17 |
H173 |
110.4 |
109.6 |
| H172 |
C17 |
H173 |
99.8 |
109.4 |
Torsion Angles for AL9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
S1 |
S2 |
177.0 |
180.1 |
| S1 |
C3 |
C4 |
C5 |
183.2 |
179.8 |
| S1 |
C3 |
C4 |
H4 |
3.3 |
359.9 |
| S1 |
C3 |
S2 |
C6 |
176.7 |
180.0 |
| O2A |
S1 |
C3 |
O1A |
117.4 |
225.2 |
| O2A |
S1 |
C3 |
N21 |
238.7 |
112.5 |
| O1A |
S1 |
C3 |
N21 |
121.3 |
247.4 |
| C3 |
S1 |
N21 |
HNL1 |
180.0 |
180.0 |
| C3 |
S1 |
N21 |
HNL2 |
54.7 |
359.9 |
| S1 |
C3 |
C4 |
S2 |
182.7 |
180.0 |
| C4 |
C3 |
S1 |
O2A |
199.3 |
202.6 |
| C4 |
C3 |
S1 |
O1A |
81.9 |
337.4 |
| C4 |
C3 |
S1 |
N21 |
320.6 |
90.1 |
| C4 |
C3 |
S2 |
C6 |
359.5 |
360.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
359.8 |
0.5 |
| C3 |
C4 |
C5 |
H5 |
179.8 |
179.9 |
| S1 |
C3 |
S2 |
C4 |
177.2 |
180.0 |
| S2 |
C3 |
S1 |
O2A |
22.4 |
22.6 |
| S2 |
C3 |
S1 |
O1A |
264.9 |
157.4 |
| S2 |
C3 |
S1 |
N21 |
143.7 |
270.0 |
| S2 |
C3 |
C4 |
C5 |
0.5 |
359.8 |
| S2 |
C3 |
C4 |
H4 |
180.5 |
179.9 |
| C5 |
C6 |
S2 |
C3 |
0.3 |
0.3 |
| C3 |
S2 |
C6 |
S7 |
181.3 |
180.0 |
| N8 |
C9 |
C10 |
H91 |
234.7 |
240.0 |
| N8 |
C9 |
C10 |
H92 |
125.3 |
120.0 |
| C10 |
C9 |
N8 |
S7 |
237.1 |
180.0 |
| C10 |
C9 |
N8 |
HN8 |
111.9 |
0.0 |
| H91 |
C9 |
C10 |
H92 |
250.6 |
240.0 |
| C11 |
C10 |
C9 |
C15 |
179.4 |
180.1 |
| C9 |
C10 |
C11 |
C12 |
180.8 |
180.0 |
| C9 |
C10 |
C11 |
H11 |
0.8 |
360.0 |
| C9 |
C10 |
C15 |
C14 |
179.2 |
179.7 |
| C9 |
C10 |
C15 |
H15 |
359.3 |
0.0 |
| C10 |
C9 |
N8 |
H91 |
125.2 |
120.0 |
| C10 |
C9 |
N8 |
H92 |
234.7 |
239.9 |
| N8 |
C9 |
C10 |
C11 |
305.3 |
90.0 |
| N8 |
C9 |
C10 |
C15 |
125.9 |
270.0 |
| H91 |
C9 |
N8 |
H92 |
109.5 |
119.9 |
| C6 |
S7 |
N8 |
C9 |
302.5 |
60.0 |
| O3B |
S7 |
N8 |
C9 |
182.4 |
172.6 |
| O4B |
S7 |
N8 |
C9 |
65.5 |
307.4 |
| S7 |
N8 |
C9 |
HN8 |
125.3 |
179.9 |
| C10 |
C9 |
H91 |
N8 |
233.5 |
240.0 |
| C10 |
C9 |
H91 |
H92 |
116.7 |
120.1 |
| H91 |
C9 |
C10 |
C11 |
70.6 |
210.1 |
| H91 |
C9 |
C10 |
C15 |
251.2 |
30.0 |
| N8 |
C9 |
H91 |
H92 |
243.2 |
240.1 |
| H91 |
C9 |
N8 |
S7 |
111.9 |
60.0 |
| H91 |
C9 |
N8 |
HN8 |
346.6 |
240.0 |
| C10 |
C9 |
H92 |
N8 |
126.5 |
120.0 |
| C10 |
C9 |
H92 |
H91 |
243.3 |
240.0 |
| H92 |
C9 |
C10 |
C11 |
180.0 |
330.1 |
| H92 |
C9 |
C10 |
C15 |
0.6 |
150.0 |
| N8 |
C9 |
H92 |
H91 |
116.7 |
120.0 |
| H92 |
C9 |
N8 |
S7 |
2.4 |
300.0 |
| H92 |
C9 |
N8 |
HN8 |
237.2 |
120.1 |
| C11 |
C10 |
C9 |
N8 |
305.3 |
90.0 |
| C11 |
C10 |
C9 |
H91 |
70.6 |
210.1 |
| C11 |
C10 |
C9 |
H92 |
180.0 |
330.1 |
| C9 |
C10 |
C11 |
C15 |
180.6 |
179.9 |
| C11 |
C10 |
C15 |
C14 |
359.8 |
359.6 |
| C11 |
C10 |
C15 |
H15 |
179.9 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
359.9 |
360.0 |
| C10 |
C11 |
C12 |
H12 |
179.9 |
180.0 |
| C15 |
C10 |
C9 |
N8 |
125.9 |
270.0 |
| C15 |
C10 |
C9 |
H91 |
251.2 |
30.0 |
| C15 |
C10 |
C9 |
H92 |
0.6 |
150.0 |
| C9 |
C10 |
C15 |
C11 |
179.4 |
180.1 |
| C15 |
C10 |
C11 |
C12 |
0.2 |
0.0 |
| C15 |
C10 |
C11 |
H11 |
180.2 |
180.0 |
| C13 |
C14 |
C15 |
C10 |
360.0 |
0.6 |
| C10 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
| C14 |
C15 |
C10 |
H15 |
180.0 |
179.7 |
| C12 |
C11 |
C10 |
C15 |
0.2 |
0.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
C14 |
359.9 |
0.3 |
| C11 |
C12 |
C13 |
O16 |
179.3 |
180.0 |
| H11 |
C11 |
C10 |
C15 |
180.2 |
180.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
| H11 |
C11 |
C12 |
H12 |
359.9 |
360.0 |
| C13 |
C12 |
C11 |
H11 |
179.9 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
O16 |
180.6 |
180.3 |
| C12 |
C13 |
C14 |
C15 |
0.1 |
359.4 |
| C12 |
C13 |
C14 |
H14 |
180.1 |
180.0 |
| C12 |
C13 |
O16 |
C17 |
360.0 |
180.0 |
| H12 |
C12 |
C11 |
H11 |
359.9 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
C14 |
180.0 |
180.3 |
| H12 |
C12 |
C13 |
O16 |
359.3 |
0.0 |
| C10 |
C15 |
C14 |
C13 |
360.0 |
0.6 |
| C14 |
C13 |
C12 |
H12 |
180.0 |
180.3 |
| C12 |
C13 |
C14 |
O16 |
179.4 |
179.7 |
| C14 |
C13 |
O16 |
C17 |
179.3 |
359.8 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
179.4 |
| C13 |
C14 |
C15 |
H15 |
180.0 |
180.3 |
| O16 |
C13 |
C12 |
H12 |
359.3 |
0.0 |
| C12 |
C13 |
O16 |
C14 |
180.6 |
180.3 |
| O16 |
C13 |
C14 |
C15 |
180.7 |
179.7 |
| O16 |
C13 |
C14 |
H14 |
0.7 |
0.3 |
| C13 |
O16 |
C17 |
H171 |
180.0 |
180.0 |
| C13 |
O16 |
C17 |
H172 |
305.3 |
300.0 |
| C13 |
O16 |
C17 |
H173 |
54.7 |
59.9 |
| C10 |
C15 |
C14 |
H15 |
180.0 |
180.3 |
| C15 |
C14 |
C13 |
O16 |
180.7 |
179.7 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.6 |
| H14 |
C14 |
C13 |
O16 |
0.7 |
0.3 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
179.4 |
| H14 |
C14 |
C15 |
H15 |
360.0 |
359.7 |
| C10 |
C15 |
H15 |
C14 |
180.0 |
179.7 |
| H15 |
C15 |
C14 |
H14 |
360.0 |
359.7 |
| O2A |
S1 |
C3 |
C4 |
199.3 |
202.6 |
| O2A |
S1 |
C3 |
S2 |
22.4 |
22.6 |
| C3 |
S1 |
O2A |
O1A |
244.8 |
123.2 |
| C3 |
S1 |
O2A |
N21 |
115.4 |
246.3 |
| O1A |
S1 |
O2A |
N21 |
230.6 |
123.1 |
| O2A |
S1 |
N21 |
HNL1 |
293.7 |
67.5 |
| O2A |
S1 |
N21 |
HNL2 |
168.4 |
247.4 |
| O1A |
S1 |
C3 |
C4 |
81.9 |
337.4 |
| O1A |
S1 |
C3 |
S2 |
264.9 |
157.4 |
| C3 |
S1 |
O1A |
O2A |
112.4 |
236.9 |
| C3 |
S1 |
O1A |
N21 |
242.9 |
113.8 |
| O2A |
S1 |
O1A |
N21 |
130.4 |
236.9 |
| O1A |
S1 |
N21 |
HNL1 |
62.1 |
292.7 |
| O1A |
S1 |
N21 |
HNL2 |
296.9 |
112.6 |
| N21 |
S1 |
C3 |
C4 |
320.6 |
90.1 |
| N21 |
S1 |
C3 |
S2 |
143.7 |
270.0 |
| C3 |
S1 |
N21 |
O2A |
246.3 |
112.5 |
| C3 |
S1 |
N21 |
O1A |
117.9 |
247.3 |
| O2A |
S1 |
N21 |
O1A |
231.5 |
134.8 |
| HNL1 |
N21 |
S1 |
HNL2 |
125.2 |
180.1 |
| S1 |
N21 |
HNL1 |
HNL2 |
234.7 |
179.9 |
| S1 |
N21 |
HNL2 |
HNL1 |
121.4 |
180.1 |
| C5 |
C4 |
C3 |
S2 |
0.5 |
359.8 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.5 |
| C4 |
C5 |
C6 |
S2 |
359.9 |
359.6 |
| C4 |
C5 |
C6 |
S7 |
178.8 |
179.8 |
| H4 |
C4 |
C3 |
S2 |
180.5 |
179.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
179.9 |
| H4 |
C4 |
C5 |
C6 |
179.7 |
180.4 |
| H4 |
C4 |
C5 |
H5 |
359.7 |
359.8 |
| C3 |
S2 |
C6 |
C5 |
0.3 |
0.3 |
| C6 |
C5 |
C4 |
H4 |
179.7 |
180.4 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.5 |
| S2 |
C6 |
C5 |
S7 |
181.1 |
179.8 |
| C5 |
C6 |
S7 |
O3B |
111.5 |
337.2 |
| C5 |
C6 |
S7 |
O4B |
226.9 |
202.3 |
| C5 |
C6 |
S7 |
N8 |
351.3 |
89.7 |
| H5 |
C5 |
C4 |
H4 |
359.7 |
359.8 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.5 |
| H5 |
C5 |
C6 |
S2 |
179.9 |
180.1 |
| H5 |
C5 |
C6 |
S7 |
358.8 |
0.3 |
| S2 |
C6 |
C5 |
H5 |
179.9 |
180.1 |
| C5 |
C6 |
S2 |
S7 |
179.1 |
180.2 |
| S2 |
C6 |
S7 |
O3B |
290.4 |
157.4 |
| S2 |
C6 |
S7 |
O4B |
45.8 |
22.5 |
| S2 |
C6 |
S7 |
N8 |
170.2 |
270.0 |
| C9 |
N8 |
S7 |
C6 |
302.5 |
60.0 |
| S7 |
C6 |
C5 |
H5 |
358.8 |
0.3 |
| C5 |
C6 |
S7 |
S2 |
181.1 |
179.7 |
| O3B |
S7 |
C6 |
O4B |
244.6 |
134.9 |
| O3B |
S7 |
C6 |
N8 |
120.2 |
247.4 |
| O4B |
S7 |
C6 |
N8 |
235.6 |
112.5 |
| C6 |
S7 |
N8 |
HN8 |
67.7 |
240.0 |
| C9 |
N8 |
S7 |
O3B |
182.4 |
172.6 |
| C6 |
S7 |
O3B |
O4B |
116.5 |
236.7 |
| C6 |
S7 |
O3B |
N8 |
235.9 |
113.7 |
| O4B |
S7 |
O3B |
N8 |
119.5 |
236.9 |
| O3B |
S7 |
N8 |
HN8 |
307.6 |
352.5 |
| C9 |
N8 |
S7 |
O4B |
65.5 |
307.4 |
| C6 |
S7 |
O4B |
O3B |
244.0 |
123.2 |
| C6 |
S7 |
O4B |
N8 |
126.4 |
246.3 |
| O3B |
S7 |
O4B |
N8 |
242.4 |
123.1 |
| O4B |
S7 |
N8 |
HN8 |
190.8 |
127.3 |
| S7 |
N8 |
C9 |
H91 |
111.9 |
60.0 |
| S7 |
N8 |
C9 |
H92 |
2.4 |
300.0 |
| C9 |
N8 |
S7 |
HN8 |
234.7 |
180.1 |
| C6 |
S7 |
N8 |
O3B |
120.1 |
247.4 |
| C6 |
S7 |
N8 |
O4B |
236.9 |
112.6 |
| O3B |
S7 |
N8 |
O4B |
116.8 |
225.2 |
| HN8 |
N8 |
C9 |
H91 |
346.6 |
240.0 |
| HN8 |
N8 |
C9 |
H92 |
237.2 |
120.1 |
| C9 |
N8 |
HN8 |
S7 |
126.4 |
179.9 |
| H171 |
C17 |
O16 |
H172 |
234.6 |
240.0 |
| H171 |
C17 |
O16 |
H173 |
125.3 |
120.1 |
| H172 |
C17 |
O16 |
H173 |
250.6 |
240.1 |
| O16 |
C17 |
H171 |
H172 |
125.3 |
119.9 |
| O16 |
C17 |
H171 |
H173 |
234.7 |
239.9 |
| H172 |
C17 |
H171 |
H173 |
109.4 |
120.0 |
| O16 |
C17 |
H172 |
H171 |
232.4 |
240.0 |
| O16 |
C17 |
H172 |
H173 |
116.2 |
119.9 |
| H171 |
C17 |
H172 |
H173 |
243.8 |
239.9 |
| O16 |
C17 |
H173 |
H171 |
127.5 |
120.1 |
| O16 |
C17 |
H173 |
H172 |
243.8 |
240.1 |
| H171 |
C17 |
H173 |
H172 |
116.3 |
120.1 |