PDB Chemical Component AL6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AL6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C3 |
S1 |
1.710 |
1.762 |
C3 |
C4 |
1.375 |
1.354 |
C3 |
S2 |
1.705 |
1.788 |
O5 |
C15 |
1.306 |
1.359 |
O5 |
C17 |
1.449 |
1.428 |
C9 |
C10 |
1.386 |
1.322 |
C9 |
N8 |
1.413 |
1.390 |
C9 |
H9 |
1.104 |
1.080 |
C10 |
C5 |
1.389 |
1.491 |
C10 |
H10 |
1.104 |
1.080 |
C11 |
C12 |
1.407 |
1.390 |
C11 |
C16 |
1.391 |
1.387 |
C11 |
N8 |
1.341 |
1.397 |
C12 |
C13 |
1.392 |
1.381 |
C12 |
H12 |
1.104 |
1.080 |
C13 |
C14 |
1.393 |
1.382 |
C13 |
H13 |
1.103 |
1.081 |
C14 |
C15 |
1.420 |
1.387 |
C14 |
H14 |
1.102 |
1.080 |
C15 |
C16 |
1.392 |
1.386 |
C16 |
H16 |
1.103 |
1.080 |
O1A |
S1 |
1.392 |
1.420 |
O2A |
S1 |
1.411 |
1.421 |
N21 |
S1 |
1.592 |
1.656 |
N21 |
HNL1 |
1.020 |
0.970 |
N21 |
HNL2 |
1.020 |
0.969 |
C4 |
C5 |
1.373 |
1.399 |
C4 |
H4 |
1.104 |
1.080 |
C5 |
C6 |
1.380 |
1.381 |
C6 |
S2 |
1.681 |
1.756 |
C6 |
S7 |
1.707 |
1.748 |
S7 |
O3B |
1.404 |
1.420 |
S7 |
O4B |
1.433 |
1.421 |
S7 |
N8 |
1.511 |
1.675 |
C17 |
H171 |
1.114 |
1.090 |
C17 |
H172 |
1.115 |
1.090 |
C17 |
H173 |
1.114 |
1.091 |
Bond Angles for AL6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
S1 |
C3 |
C4 |
125.1 |
128.8 |
S1 |
C3 |
S2 |
121.9 |
128.9 |
C3 |
S1 |
O1A |
104.2 |
105.8 |
C3 |
S1 |
O2A |
107.1 |
105.8 |
C3 |
S1 |
N21 |
112.6 |
107.3 |
C4 |
C3 |
S2 |
113.0 |
102.3 |
C3 |
C4 |
C5 |
110.4 |
120.1 |
C3 |
C4 |
H4 |
124.9 |
120.0 |
C3 |
S2 |
C6 |
90.9 |
97.7 |
C15 |
O5 |
C17 |
118.2 |
106.8 |
O5 |
C15 |
C14 |
123.6 |
120.0 |
O5 |
C15 |
C16 |
115.2 |
120.0 |
O5 |
C17 |
H171 |
118.2 |
109.5 |
O5 |
C17 |
H172 |
109.0 |
109.5 |
O5 |
C17 |
H173 |
109.0 |
109.5 |
C10 |
C9 |
N8 |
127.3 |
126.2 |
C10 |
C9 |
H9 |
115.3 |
116.9 |
C9 |
C10 |
C5 |
121.4 |
122.9 |
C9 |
C10 |
H10 |
119.2 |
118.5 |
N8 |
C9 |
H9 |
117.5 |
116.9 |
C9 |
N8 |
C11 |
112.4 |
121.1 |
C9 |
N8 |
S7 |
117.8 |
117.7 |
C5 |
C10 |
H10 |
119.4 |
118.6 |
C10 |
C5 |
C4 |
124.7 |
126.6 |
C10 |
C5 |
C6 |
121.2 |
118.1 |
C12 |
C11 |
C16 |
121.2 |
119.9 |
C12 |
C11 |
N8 |
116.8 |
120.0 |
C11 |
C12 |
C13 |
120.2 |
120.0 |
C11 |
C12 |
H12 |
120.4 |
120.0 |
C16 |
C11 |
N8 |
121.9 |
120.1 |
C11 |
C16 |
C15 |
118.3 |
119.9 |
C11 |
C16 |
H16 |
120.8 |
120.1 |
C11 |
N8 |
S7 |
125.9 |
121.2 |
C13 |
C12 |
H12 |
119.4 |
120.0 |
C12 |
C13 |
C14 |
119.6 |
120.2 |
C12 |
C13 |
H13 |
120.1 |
119.9 |
C14 |
C13 |
H13 |
120.2 |
119.9 |
C13 |
C14 |
C15 |
119.5 |
120.1 |
C13 |
C14 |
H14 |
119.3 |
119.9 |
C15 |
C14 |
H14 |
121.2 |
120.0 |
C14 |
C15 |
C16 |
121.2 |
120.0 |
C15 |
C16 |
H16 |
120.9 |
120.0 |
O1A |
S1 |
O2A |
112.2 |
125.4 |
O1A |
S1 |
N21 |
108.9 |
105.8 |
O2A |
S1 |
N21 |
111.7 |
105.8 |
S1 |
N21 |
HNL1 |
112.6 |
119.9 |
S1 |
N21 |
HNL2 |
111.0 |
120.0 |
HNL1 |
N21 |
HNL2 |
111.1 |
120.0 |
C5 |
C4 |
H4 |
124.7 |
119.9 |
C4 |
C5 |
C6 |
114.0 |
115.3 |
C5 |
C6 |
S2 |
111.6 |
104.7 |
C5 |
C6 |
S7 |
119.8 |
123.2 |
S2 |
C6 |
S7 |
128.6 |
132.2 |
C6 |
S7 |
O3B |
102.8 |
106.5 |
C6 |
S7 |
O4B |
107.6 |
106.4 |
C6 |
S7 |
N8 |
111.5 |
102.9 |
O3B |
S7 |
O4B |
107.6 |
126.1 |
O3B |
S7 |
N8 |
103.7 |
106.5 |
O4B |
S7 |
N8 |
121.8 |
106.3 |
H171 |
C17 |
H172 |
109.1 |
109.4 |
H171 |
C17 |
H173 |
109.1 |
109.4 |
H172 |
C17 |
H173 |
101.0 |
109.5 |
Torsion Angles for AL6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
C3 |
S1 |
S2 |
179.6 |
180.1 |
S1 |
C3 |
C4 |
C5 |
181.5 |
180.3 |
S1 |
C3 |
C4 |
H4 |
1.5 |
0.3 |
S1 |
C3 |
S2 |
C6 |
180.0 |
180.2 |
O1A |
S1 |
C3 |
O2A |
241.0 |
225.1 |
O1A |
S1 |
C3 |
N21 |
117.8 |
112.6 |
O2A |
S1 |
C3 |
N21 |
236.8 |
247.4 |
C3 |
S1 |
N21 |
HNL1 |
180.0 |
179.9 |
C3 |
S1 |
N21 |
HNL2 |
54.7 |
0.0 |
S1 |
C3 |
C4 |
S2 |
180.4 |
179.9 |
C4 |
C3 |
S1 |
O1A |
75.3 |
202.6 |
C4 |
C3 |
S1 |
O2A |
194.3 |
337.5 |
C4 |
C3 |
S1 |
N21 |
317.5 |
90.0 |
C4 |
C3 |
S2 |
C6 |
0.3 |
0.1 |
C10 |
C5 |
C4 |
C3 |
173.4 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
357.6 |
359.1 |
S1 |
C3 |
S2 |
C4 |
179.6 |
180.1 |
S2 |
C3 |
S1 |
O1A |
255.8 |
22.5 |
S2 |
C3 |
S1 |
O2A |
14.8 |
157.4 |
S2 |
C3 |
S1 |
N21 |
137.9 |
269.9 |
S2 |
C3 |
C4 |
C5 |
1.1 |
0.4 |
S2 |
C3 |
C4 |
H4 |
181.1 |
180.4 |
C5 |
C6 |
S2 |
C3 |
358.3 |
359.5 |
C3 |
S2 |
C6 |
S7 |
177.7 |
179.4 |
C15 |
O5 |
C17 |
H171 |
180.0 |
180.0 |
C15 |
O5 |
C17 |
H172 |
305.3 |
300.0 |
C15 |
O5 |
C17 |
H173 |
54.7 |
60.0 |
C11 |
C16 |
C15 |
O5 |
179.4 |
179.7 |
C13 |
C14 |
C15 |
O5 |
180.8 |
180.0 |
O5 |
C15 |
C14 |
H14 |
0.8 |
0.0 |
C14 |
C15 |
O5 |
C16 |
179.5 |
180.2 |
O5 |
C15 |
C16 |
H16 |
359.4 |
0.2 |
C17 |
O5 |
C15 |
C14 |
359.4 |
360.0 |
C17 |
O5 |
C15 |
C16 |
179.9 |
179.8 |
H171 |
C17 |
O5 |
H172 |
234.7 |
240.0 |
H171 |
C17 |
O5 |
H173 |
125.3 |
120.0 |
H172 |
C17 |
O5 |
H173 |
250.6 |
240.0 |
N8 |
C9 |
C10 |
H9 |
180.0 |
179.9 |
C10 |
C9 |
N8 |
C11 |
155.6 |
151.6 |
C10 |
C9 |
N8 |
S7 |
356.5 |
331.9 |
C5 |
C10 |
C9 |
H10 |
180.0 |
179.9 |
C9 |
C10 |
C5 |
C4 |
184.6 |
191.5 |
C9 |
C10 |
C5 |
C6 |
0.1 |
12.4 |
C10 |
C9 |
N8 |
H9 |
180.0 |
180.1 |
N8 |
C9 |
C10 |
C5 |
357.4 |
2.4 |
N8 |
C9 |
C10 |
H10 |
177.4 |
182.5 |
C12 |
C11 |
N8 |
C9 |
128.8 |
149.9 |
C16 |
C11 |
N8 |
C9 |
305.9 |
330.2 |
C11 |
N8 |
C9 |
S7 |
159.1 |
179.7 |
C6 |
S7 |
N8 |
C9 |
9.7 |
32.7 |
O3B |
S7 |
N8 |
C9 |
259.7 |
144.5 |
O4B |
S7 |
N8 |
C9 |
138.5 |
281.0 |
C10 |
C9 |
H9 |
N8 |
180.0 |
179.9 |
H9 |
C9 |
C10 |
C5 |
177.5 |
182.5 |
H9 |
C9 |
C10 |
H10 |
357.5 |
2.6 |
H9 |
C9 |
N8 |
C11 |
335.5 |
331.5 |
H9 |
C9 |
N8 |
S7 |
176.4 |
151.8 |
C3 |
C4 |
C5 |
C10 |
173.4 |
180.0 |
C5 |
C10 |
C9 |
N8 |
357.4 |
2.4 |
C5 |
C10 |
C9 |
H9 |
177.5 |
182.5 |
C9 |
C10 |
C5 |
H10 |
180.0 |
180.1 |
C10 |
C5 |
C4 |
H4 |
353.4 |
360.0 |
C4 |
C5 |
C10 |
C6 |
184.5 |
179.1 |
C10 |
C5 |
C6 |
S2 |
186.7 |
180.1 |
C10 |
C5 |
C6 |
S7 |
7.3 |
0.1 |
H10 |
C10 |
C9 |
N8 |
177.4 |
182.5 |
H10 |
C10 |
C9 |
H9 |
357.5 |
2.6 |
C9 |
C10 |
H10 |
C5 |
180.0 |
179.9 |
H10 |
C10 |
C5 |
C4 |
4.7 |
11.4 |
H10 |
C10 |
C5 |
C6 |
180.1 |
192.3 |
C9 |
N8 |
C11 |
C12 |
128.8 |
149.9 |
C16 |
C11 |
C12 |
N8 |
182.9 |
179.7 |
C12 |
C11 |
C16 |
C15 |
359.6 |
0.6 |
C12 |
C11 |
C16 |
H16 |
179.7 |
180.1 |
C12 |
C11 |
N8 |
S7 |
285.9 |
329.6 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.8 |
C11 |
C12 |
C13 |
C14 |
359.5 |
0.1 |
C11 |
C12 |
C13 |
H13 |
179.5 |
180.1 |
O5 |
C15 |
C16 |
C11 |
179.4 |
179.7 |
C9 |
N8 |
C11 |
C16 |
305.9 |
330.2 |
C12 |
C11 |
C16 |
N8 |
177.0 |
180.3 |
C16 |
C11 |
C12 |
C13 |
0.6 |
359.6 |
C16 |
C11 |
C12 |
H12 |
180.6 |
179.8 |
C16 |
C11 |
N8 |
S7 |
103.0 |
149.9 |
C14 |
C15 |
C16 |
C11 |
359.9 |
359.5 |
C15 |
C16 |
C11 |
H16 |
180.0 |
180.4 |
C11 |
N8 |
C9 |
H9 |
335.5 |
331.5 |
C9 |
N8 |
C11 |
S7 |
202.9 |
180.3 |
C12 |
C11 |
N8 |
C16 |
182.9 |
179.7 |
N8 |
C11 |
C12 |
C13 |
177.8 |
179.9 |
N8 |
C11 |
C12 |
H12 |
357.7 |
0.1 |
N8 |
C11 |
C16 |
C15 |
182.7 |
180.3 |
N8 |
C11 |
C16 |
H16 |
2.7 |
359.8 |
C6 |
S7 |
N8 |
C11 |
213.7 |
213.0 |
O3B |
S7 |
N8 |
C11 |
103.7 |
324.8 |
O4B |
S7 |
N8 |
C11 |
342.6 |
101.3 |
C13 |
C12 |
C11 |
C16 |
0.6 |
359.6 |
C13 |
C12 |
C11 |
N8 |
177.8 |
179.9 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
C15 |
0.0 |
0.0 |
C12 |
C13 |
C14 |
H14 |
180.0 |
179.9 |
H12 |
C12 |
C11 |
C16 |
180.6 |
179.8 |
H12 |
C12 |
C11 |
N8 |
357.7 |
0.1 |
C11 |
C12 |
H12 |
C13 |
180.0 |
179.8 |
H12 |
C12 |
C13 |
C14 |
179.6 |
179.9 |
H12 |
C12 |
C13 |
H13 |
359.5 |
359.9 |
O5 |
C15 |
C14 |
C13 |
180.8 |
180.0 |
C14 |
C13 |
C12 |
H12 |
179.6 |
179.9 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
C13 |
C14 |
C15 |
C16 |
0.3 |
0.2 |
H13 |
C13 |
C12 |
H12 |
359.5 |
359.9 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.0 |
H13 |
C13 |
C14 |
C15 |
180.0 |
180.0 |
H13 |
C13 |
C14 |
H14 |
360.0 |
360.0 |
C14 |
C15 |
O5 |
C17 |
359.4 |
360.0 |
O5 |
C15 |
C14 |
C16 |
180.5 |
179.8 |
C11 |
C16 |
C15 |
C14 |
359.9 |
359.5 |
C15 |
C14 |
C13 |
H13 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
C14 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
H14 |
C14 |
C13 |
H13 |
360.0 |
360.0 |
C13 |
C14 |
H14 |
C15 |
180.0 |
180.1 |
H14 |
C14 |
C15 |
C16 |
180.3 |
180.2 |
C16 |
C15 |
O5 |
C17 |
179.9 |
179.8 |
O5 |
C15 |
C16 |
C14 |
179.5 |
180.2 |
C15 |
C16 |
C11 |
N8 |
182.7 |
180.3 |
C11 |
C16 |
C15 |
H16 |
180.0 |
179.6 |
C16 |
C15 |
C14 |
H14 |
180.3 |
180.2 |
H16 |
C16 |
C11 |
N8 |
2.7 |
359.8 |
C11 |
C16 |
H16 |
C15 |
180.0 |
180.4 |
O1A |
S1 |
C3 |
C4 |
75.3 |
202.6 |
O1A |
S1 |
C3 |
S2 |
255.8 |
22.5 |
C3 |
S1 |
O1A |
O2A |
115.5 |
123.2 |
C3 |
S1 |
O1A |
N21 |
239.7 |
246.4 |
O2A |
S1 |
O1A |
N21 |
124.2 |
123.1 |
O1A |
S1 |
N21 |
HNL1 |
65.0 |
67.4 |
O1A |
S1 |
N21 |
HNL2 |
299.7 |
247.4 |
O2A |
S1 |
C3 |
C4 |
194.3 |
337.5 |
O2A |
S1 |
C3 |
S2 |
14.8 |
157.4 |
C3 |
S1 |
O2A |
O1A |
246.3 |
236.8 |
C3 |
S1 |
O2A |
N21 |
123.7 |
113.7 |
O1A |
S1 |
O2A |
N21 |
237.4 |
236.9 |
O2A |
S1 |
N21 |
HNL1 |
300.6 |
292.6 |
O2A |
S1 |
N21 |
HNL2 |
175.2 |
112.6 |
N21 |
S1 |
C3 |
C4 |
317.5 |
90.0 |
N21 |
S1 |
C3 |
S2 |
137.9 |
269.9 |
C3 |
S1 |
N21 |
O1A |
115.0 |
112.6 |
C3 |
S1 |
N21 |
O2A |
239.4 |
247.4 |
O1A |
S1 |
N21 |
O2A |
124.5 |
134.8 |
HNL1 |
N21 |
S1 |
HNL2 |
125.3 |
179.9 |
S1 |
N21 |
HNL1 |
HNL2 |
234.7 |
180.1 |
S1 |
N21 |
HNL2 |
HNL1 |
126.1 |
179.9 |
C5 |
C4 |
C3 |
S2 |
1.1 |
0.4 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C4 |
C5 |
C10 |
H10 |
4.7 |
11.4 |
C10 |
C5 |
C4 |
C6 |
175.8 |
180.8 |
C4 |
C5 |
C6 |
S2 |
2.7 |
0.8 |
C4 |
C5 |
C6 |
S7 |
183.2 |
180.9 |
H4 |
C4 |
C3 |
S2 |
181.1 |
180.4 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
177.6 |
179.1 |
C3 |
S2 |
C6 |
C5 |
358.3 |
359.5 |
C6 |
C5 |
C10 |
H10 |
180.1 |
192.3 |
C10 |
C5 |
C6 |
C4 |
184.1 |
179.2 |
C6 |
C5 |
C4 |
H4 |
177.6 |
179.1 |
S2 |
C6 |
C5 |
S7 |
179.5 |
180.0 |
C5 |
C6 |
S7 |
O3B |
98.5 |
227.9 |
C5 |
C6 |
S7 |
O4B |
212.0 |
91.3 |
C5 |
C6 |
S7 |
N8 |
348.0 |
339.7 |
C5 |
C6 |
S2 |
S7 |
180.6 |
180.0 |
S2 |
C6 |
S7 |
O3B |
279.2 |
48.0 |
S2 |
C6 |
S7 |
O4B |
32.6 |
271.3 |
S2 |
C6 |
S7 |
N8 |
168.6 |
159.7 |
C9 |
N8 |
S7 |
C6 |
9.7 |
32.7 |
C11 |
N8 |
S7 |
C6 |
213.7 |
213.0 |
C5 |
C6 |
S7 |
S2 |
179.3 |
180.0 |
O3B |
S7 |
C6 |
O4B |
246.6 |
136.6 |
O3B |
S7 |
C6 |
N8 |
110.6 |
248.2 |
O4B |
S7 |
C6 |
N8 |
224.0 |
111.6 |
C9 |
N8 |
S7 |
O3B |
259.7 |
144.5 |
C11 |
N8 |
S7 |
O3B |
103.7 |
324.8 |
C6 |
S7 |
O3B |
O4B |
113.4 |
234.5 |
C6 |
S7 |
O3B |
N8 |
243.7 |
109.3 |
O4B |
S7 |
O3B |
N8 |
130.2 |
234.8 |
C9 |
N8 |
S7 |
O4B |
138.5 |
281.0 |
C11 |
N8 |
S7 |
O4B |
342.6 |
101.3 |
C6 |
S7 |
O4B |
O3B |
249.8 |
125.5 |
C6 |
S7 |
O4B |
N8 |
130.5 |
250.8 |
O3B |
S7 |
O4B |
N8 |
240.7 |
125.3 |
S7 |
N8 |
C9 |
H9 |
176.4 |
151.8 |
C9 |
N8 |
S7 |
C11 |
156.0 |
179.7 |
C6 |
S7 |
N8 |
O3B |
110.0 |
248.2 |
C6 |
S7 |
N8 |
O4B |
231.2 |
111.7 |
O3B |
S7 |
N8 |
O4B |
121.1 |
223.5 |
O5 |
C17 |
H171 |
H172 |
125.2 |
120.1 |
O5 |
C17 |
H171 |
H173 |
234.7 |
240.0 |
H172 |
C17 |
H171 |
H173 |
109.5 |
119.9 |
O5 |
C17 |
H172 |
H171 |
229.6 |
239.9 |
O5 |
C17 |
H172 |
H173 |
114.7 |
120.0 |
H171 |
C17 |
H172 |
H173 |
245.2 |
240.1 |
O5 |
C17 |
H173 |
H171 |
130.5 |
120.0 |
O5 |
C17 |
H173 |
H172 |
245.3 |
239.9 |
H171 |
C17 |
H173 |
H172 |
114.8 |
119.9 |