PDB Chemical Component AL5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AL5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
S1 |
1.734 |
1.762 |
| C3 |
C4 |
1.381 |
1.356 |
| C3 |
S2 |
1.734 |
1.785 |
| C9 |
C10 |
1.514 |
1.506 |
| C9 |
N8 |
1.462 |
1.464 |
| C9 |
H91 |
1.116 |
1.090 |
| C9 |
H92 |
1.114 |
1.089 |
| C10 |
C11 |
1.406 |
1.381 |
| C10 |
C15 |
1.394 |
1.383 |
| C11 |
C12 |
1.396 |
1.383 |
| C11 |
H11 |
1.104 |
1.080 |
| C12 |
C13 |
1.404 |
1.382 |
| C12 |
H12 |
1.103 |
1.080 |
| C13 |
C14 |
1.392 |
1.381 |
| C13 |
C16 |
1.544 |
1.508 |
| C14 |
C15 |
1.392 |
1.383 |
| C14 |
H14 |
1.103 |
1.080 |
| C15 |
H15 |
1.103 |
1.080 |
| C16 |
H161 |
1.114 |
1.089 |
| C16 |
H162 |
1.115 |
1.090 |
| C16 |
H163 |
1.115 |
1.090 |
| O2A |
S1 |
1.437 |
1.421 |
| O1A |
S1 |
1.419 |
1.420 |
| N21 |
S1 |
1.577 |
1.657 |
| N21 |
HNL1 |
1.019 |
0.970 |
| N21 |
HNL2 |
1.021 |
0.970 |
| C4 |
C5 |
1.378 |
1.382 |
| C4 |
H4 |
1.104 |
1.080 |
| C5 |
C6 |
1.385 |
1.356 |
| C5 |
H5 |
1.104 |
1.079 |
| C6 |
S2 |
1.708 |
1.784 |
| C6 |
S7 |
1.732 |
1.762 |
| S7 |
O3B |
1.426 |
1.421 |
| S7 |
O4B |
1.427 |
1.420 |
| S7 |
N8 |
1.488 |
1.656 |
| N8 |
HN8 |
1.021 |
0.971 |
Bond Angles for AL5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C3 |
C4 |
122.7 |
129.0 |
| S1 |
C3 |
S2 |
122.5 |
129.1 |
| C3 |
S1 |
O2A |
103.8 |
105.8 |
| C3 |
S1 |
O1A |
108.4 |
105.8 |
| C3 |
S1 |
N21 |
104.5 |
107.4 |
| C4 |
C3 |
S2 |
114.7 |
102.0 |
| C3 |
C4 |
C5 |
110.9 |
119.0 |
| C3 |
C4 |
H4 |
124.6 |
120.5 |
| C3 |
S2 |
C6 |
87.6 |
98.1 |
| C10 |
C9 |
N8 |
112.9 |
109.5 |
| C10 |
C9 |
H91 |
111.0 |
109.5 |
| C10 |
C9 |
H92 |
111.0 |
109.5 |
| C9 |
C10 |
C11 |
121.7 |
120.0 |
| C9 |
C10 |
C15 |
118.7 |
120.0 |
| N8 |
C9 |
H91 |
110.9 |
109.4 |
| N8 |
C9 |
H92 |
110.9 |
109.4 |
| C9 |
N8 |
S7 |
113.8 |
120.1 |
| C9 |
N8 |
HN8 |
110.6 |
119.9 |
| H91 |
C9 |
H92 |
99.4 |
109.4 |
| C11 |
C10 |
C15 |
119.6 |
120.0 |
| C10 |
C11 |
C12 |
119.8 |
120.0 |
| C10 |
C11 |
H11 |
120.5 |
120.0 |
| C10 |
C15 |
C14 |
120.5 |
120.0 |
| C10 |
C15 |
H15 |
119.8 |
120.0 |
| C12 |
C11 |
H11 |
119.7 |
120.0 |
| C11 |
C12 |
C13 |
120.1 |
119.9 |
| C11 |
C12 |
H12 |
119.6 |
120.0 |
| C13 |
C12 |
H12 |
120.2 |
120.0 |
| C12 |
C13 |
C14 |
119.8 |
120.0 |
| C12 |
C13 |
C16 |
121.4 |
120.0 |
| C14 |
C13 |
C16 |
118.8 |
120.0 |
| C13 |
C14 |
C15 |
120.1 |
120.0 |
| C13 |
C14 |
H14 |
119.9 |
120.1 |
| C13 |
C16 |
H161 |
121.4 |
109.5 |
| C13 |
C16 |
H162 |
107.9 |
109.5 |
| C13 |
C16 |
H163 |
107.9 |
109.5 |
| C15 |
C14 |
H14 |
119.9 |
119.9 |
| C14 |
C15 |
H15 |
119.7 |
120.0 |
| H161 |
C16 |
H162 |
107.9 |
109.5 |
| H161 |
C16 |
H163 |
108.0 |
109.5 |
| H162 |
C16 |
H163 |
101.9 |
109.5 |
| O2A |
S1 |
O1A |
110.6 |
125.4 |
| O2A |
S1 |
N21 |
114.9 |
105.7 |
| O1A |
S1 |
N21 |
113.8 |
105.8 |
| S1 |
N21 |
HNL1 |
104.5 |
120.0 |
| S1 |
N21 |
HNL2 |
114.1 |
120.0 |
| HNL1 |
N21 |
HNL2 |
114.1 |
120.0 |
| C5 |
C4 |
H4 |
124.4 |
120.5 |
| C4 |
C5 |
C6 |
111.6 |
119.0 |
| C4 |
C5 |
H5 |
123.9 |
120.5 |
| C6 |
C5 |
H5 |
124.4 |
120.5 |
| C5 |
C6 |
S2 |
115.0 |
102.0 |
| C5 |
C6 |
S7 |
129.8 |
129.0 |
| S2 |
C6 |
S7 |
115.1 |
129.0 |
| C6 |
S7 |
O3B |
109.2 |
105.8 |
| C6 |
S7 |
O4B |
106.0 |
105.8 |
| C6 |
S7 |
N8 |
111.3 |
107.3 |
| O3B |
S7 |
O4B |
103.5 |
125.4 |
| O3B |
S7 |
N8 |
113.9 |
105.8 |
| O4B |
S7 |
N8 |
112.5 |
105.8 |
| S7 |
N8 |
HN8 |
110.6 |
120.0 |
Torsion Angles for AL5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
S1 |
S2 |
177.0 |
180.1 |
| S1 |
C3 |
C4 |
C5 |
183.0 |
179.7 |
| S1 |
C3 |
C4 |
H4 |
3.0 |
359.9 |
| S1 |
C3 |
S2 |
C6 |
176.8 |
180.1 |
| O2A |
S1 |
C3 |
O1A |
117.6 |
225.2 |
| O2A |
S1 |
C3 |
N21 |
239.3 |
112.6 |
| O1A |
S1 |
C3 |
N21 |
121.7 |
247.4 |
| C3 |
S1 |
N21 |
HNL1 |
180.0 |
180.0 |
| C3 |
S1 |
N21 |
HNL2 |
54.7 |
359.9 |
| S1 |
C3 |
C4 |
S2 |
182.8 |
179.9 |
| C4 |
C3 |
S1 |
O2A |
192.5 |
202.6 |
| C4 |
C3 |
S1 |
O1A |
74.9 |
337.5 |
| C4 |
C3 |
S1 |
N21 |
313.2 |
90.1 |
| C4 |
C3 |
S2 |
C6 |
359.6 |
359.9 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
0.1 |
0.4 |
| C3 |
C4 |
C5 |
H5 |
180.1 |
180.0 |
| S1 |
C3 |
S2 |
C4 |
177.2 |
180.1 |
| S2 |
C3 |
S1 |
O2A |
15.5 |
22.5 |
| S2 |
C3 |
S1 |
O1A |
257.9 |
157.3 |
| S2 |
C3 |
S1 |
N21 |
136.2 |
270.0 |
| S2 |
C3 |
C4 |
C5 |
0.2 |
359.8 |
| S2 |
C3 |
C4 |
H4 |
180.2 |
180.0 |
| C5 |
C6 |
S2 |
C3 |
0.4 |
0.2 |
| C3 |
S2 |
C6 |
S7 |
182.9 |
180.1 |
| N8 |
C9 |
C10 |
H91 |
234.8 |
240.0 |
| N8 |
C9 |
C10 |
H92 |
125.3 |
120.0 |
| C10 |
C9 |
N8 |
S7 |
246.6 |
180.0 |
| C10 |
C9 |
N8 |
HN8 |
121.3 |
0.0 |
| H91 |
C9 |
C10 |
H92 |
250.5 |
240.0 |
| C11 |
C10 |
C9 |
C15 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
179.8 |
180.0 |
| C9 |
C10 |
C11 |
H11 |
359.8 |
360.0 |
| C9 |
C10 |
C15 |
C14 |
180.0 |
179.8 |
| C9 |
C10 |
C15 |
H15 |
0.0 |
0.0 |
| C10 |
C9 |
N8 |
H91 |
125.3 |
120.0 |
| C10 |
C9 |
N8 |
H92 |
234.7 |
239.9 |
| N8 |
C9 |
C10 |
C11 |
321.7 |
90.0 |
| N8 |
C9 |
C10 |
C15 |
141.7 |
270.0 |
| H91 |
C9 |
N8 |
H92 |
109.5 |
119.9 |
| C6 |
S7 |
N8 |
C9 |
293.6 |
60.0 |
| O3B |
S7 |
N8 |
C9 |
169.7 |
172.6 |
| O4B |
S7 |
N8 |
C9 |
52.3 |
307.4 |
| S7 |
N8 |
C9 |
HN8 |
125.3 |
180.0 |
| C10 |
C9 |
H91 |
N8 |
233.6 |
239.9 |
| C10 |
C9 |
H91 |
H92 |
116.8 |
120.1 |
| H91 |
C9 |
C10 |
C11 |
86.9 |
210.0 |
| H91 |
C9 |
C10 |
C15 |
266.9 |
30.0 |
| N8 |
C9 |
H91 |
H92 |
243.2 |
240.1 |
| H91 |
C9 |
N8 |
S7 |
121.3 |
59.9 |
| H91 |
C9 |
N8 |
HN8 |
356.0 |
240.0 |
| C10 |
C9 |
H92 |
N8 |
126.4 |
120.1 |
| C10 |
C9 |
H92 |
H91 |
243.2 |
240.0 |
| H92 |
C9 |
C10 |
C11 |
196.4 |
330.0 |
| H92 |
C9 |
C10 |
C15 |
16.4 |
150.0 |
| N8 |
C9 |
H92 |
H91 |
116.8 |
119.9 |
| H92 |
C9 |
N8 |
S7 |
11.9 |
300.1 |
| H92 |
C9 |
N8 |
HN8 |
246.6 |
120.1 |
| C11 |
C10 |
C9 |
N8 |
321.7 |
90.0 |
| C11 |
C10 |
C9 |
H91 |
86.9 |
210.0 |
| C11 |
C10 |
C9 |
H92 |
196.4 |
330.0 |
| C9 |
C10 |
C11 |
C15 |
180.0 |
180.0 |
| C11 |
C10 |
C15 |
C14 |
360.0 |
359.8 |
| C11 |
C10 |
C15 |
H15 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.2 |
360.0 |
| C10 |
C11 |
C12 |
H12 |
180.2 |
180.0 |
| C15 |
C10 |
C9 |
N8 |
141.7 |
270.0 |
| C15 |
C10 |
C9 |
H91 |
266.9 |
30.0 |
| C15 |
C10 |
C9 |
H92 |
16.4 |
150.0 |
| C9 |
C10 |
C15 |
C11 |
180.0 |
180.0 |
| C15 |
C10 |
C11 |
C12 |
359.9 |
360.0 |
| C15 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| C13 |
C14 |
C15 |
C10 |
0.1 |
0.5 |
| C10 |
C15 |
C14 |
H14 |
180.2 |
180.0 |
| C14 |
C15 |
C10 |
H15 |
180.0 |
179.8 |
| C12 |
C11 |
C10 |
C15 |
359.9 |
360.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
C14 |
359.8 |
0.3 |
| C11 |
C12 |
C13 |
C16 |
178.9 |
180.0 |
| H11 |
C11 |
C10 |
C15 |
179.8 |
180.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
180.3 |
180.0 |
| H11 |
C11 |
C12 |
H12 |
0.2 |
0.0 |
| C13 |
C12 |
C11 |
H11 |
180.3 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
C16 |
180.9 |
180.3 |
| C12 |
C13 |
C14 |
C15 |
360.0 |
359.5 |
| C12 |
C13 |
C14 |
H14 |
179.9 |
179.9 |
| C12 |
C13 |
C16 |
H161 |
180.1 |
90.0 |
| C12 |
C13 |
C16 |
H162 |
305.3 |
210.0 |
| C12 |
C13 |
C16 |
H163 |
54.7 |
330.0 |
| H12 |
C12 |
C11 |
H11 |
0.2 |
0.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
C14 |
179.9 |
180.3 |
| H12 |
C12 |
C13 |
C16 |
359.0 |
360.0 |
| C10 |
C15 |
C14 |
C13 |
0.1 |
0.5 |
| C14 |
C13 |
C12 |
H12 |
179.9 |
180.3 |
| C12 |
C13 |
C14 |
C16 |
179.1 |
179.7 |
| C14 |
C13 |
C16 |
H161 |
359.2 |
269.8 |
| C14 |
C13 |
C16 |
H162 |
124.4 |
29.7 |
| C14 |
C13 |
C16 |
H163 |
233.8 |
149.7 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
179.6 |
| C13 |
C14 |
C15 |
H15 |
180.1 |
180.3 |
| C16 |
C13 |
C12 |
H12 |
359.0 |
360.0 |
| C12 |
C13 |
C16 |
C14 |
180.9 |
180.3 |
| C16 |
C13 |
C14 |
C15 |
180.8 |
179.8 |
| C16 |
C13 |
C14 |
H14 |
0.8 |
0.2 |
| H161 |
C16 |
C13 |
H162 |
234.7 |
240.0 |
| H161 |
C16 |
C13 |
H163 |
125.4 |
120.0 |
| H162 |
C16 |
C13 |
H163 |
250.6 |
240.0 |
| C10 |
C15 |
C14 |
H15 |
180.0 |
180.2 |
| C15 |
C14 |
C13 |
C16 |
180.8 |
179.8 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.4 |
| H14 |
C14 |
C13 |
C16 |
0.8 |
0.2 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
179.6 |
| H14 |
C14 |
C15 |
H15 |
0.1 |
359.8 |
| C10 |
C15 |
H15 |
C14 |
180.0 |
179.8 |
| H15 |
C15 |
C14 |
H14 |
0.1 |
359.8 |
| C13 |
C16 |
H161 |
H162 |
125.2 |
120.0 |
| C13 |
C16 |
H161 |
H163 |
234.7 |
240.0 |
| H162 |
C16 |
H161 |
H163 |
109.4 |
120.0 |
| C13 |
C16 |
H162 |
H161 |
227.1 |
240.0 |
| C13 |
C16 |
H162 |
H163 |
113.5 |
120.0 |
| H161 |
C16 |
H162 |
H163 |
246.4 |
240.0 |
| C13 |
C16 |
H163 |
H161 |
133.0 |
120.0 |
| C13 |
C16 |
H163 |
H162 |
246.5 |
240.0 |
| H161 |
C16 |
H163 |
H162 |
113.5 |
120.0 |
| O2A |
S1 |
C3 |
C4 |
192.5 |
202.6 |
| O2A |
S1 |
C3 |
S2 |
15.5 |
22.5 |
| C3 |
S1 |
O2A |
O1A |
243.9 |
123.2 |
| C3 |
S1 |
O2A |
N21 |
113.4 |
246.3 |
| O1A |
S1 |
O2A |
N21 |
229.5 |
123.1 |
| O2A |
S1 |
N21 |
HNL1 |
293.0 |
67.4 |
| O2A |
S1 |
N21 |
HNL2 |
167.8 |
247.4 |
| O1A |
S1 |
C3 |
C4 |
74.9 |
337.5 |
| O1A |
S1 |
C3 |
S2 |
257.9 |
157.3 |
| C3 |
S1 |
O1A |
O2A |
113.2 |
236.8 |
| C3 |
S1 |
O1A |
N21 |
244.2 |
113.7 |
| O2A |
S1 |
O1A |
N21 |
131.0 |
236.9 |
| O1A |
S1 |
N21 |
HNL1 |
61.9 |
292.7 |
| O1A |
S1 |
N21 |
HNL2 |
296.7 |
112.6 |
| N21 |
S1 |
C3 |
C4 |
313.2 |
90.1 |
| N21 |
S1 |
C3 |
S2 |
136.2 |
270.0 |
| C3 |
S1 |
N21 |
O2A |
246.9 |
112.6 |
| C3 |
S1 |
N21 |
O1A |
118.0 |
247.4 |
| O2A |
S1 |
N21 |
O1A |
231.1 |
134.8 |
| HNL1 |
N21 |
S1 |
HNL2 |
125.2 |
180.1 |
| S1 |
N21 |
HNL1 |
HNL2 |
234.8 |
179.9 |
| S1 |
N21 |
HNL2 |
HNL1 |
120.0 |
180.1 |
| C5 |
C4 |
C3 |
S2 |
0.2 |
359.8 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.4 |
| C4 |
C5 |
C6 |
S2 |
359.6 |
359.6 |
| C4 |
C5 |
C6 |
S7 |
176.7 |
179.8 |
| H4 |
C4 |
C3 |
S2 |
180.2 |
180.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
179.9 |
| H4 |
C4 |
C5 |
C6 |
180.1 |
180.3 |
| H4 |
C4 |
C5 |
H5 |
0.1 |
359.8 |
| C3 |
S2 |
C6 |
C5 |
0.4 |
0.2 |
| C6 |
C5 |
C4 |
H4 |
180.1 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.6 |
| S2 |
C6 |
C5 |
S7 |
182.9 |
179.8 |
| C5 |
C6 |
S7 |
O3B |
133.2 |
337.2 |
| C5 |
C6 |
S7 |
O4B |
244.1 |
202.4 |
| C5 |
C6 |
S7 |
N8 |
6.6 |
89.8 |
| H5 |
C5 |
C4 |
H4 |
0.1 |
359.8 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.5 |
| H5 |
C5 |
C6 |
S2 |
179.6 |
180.1 |
| H5 |
C5 |
C6 |
S7 |
356.7 |
0.2 |
| S2 |
C6 |
C5 |
H5 |
179.6 |
180.1 |
| C5 |
C6 |
S2 |
S7 |
177.5 |
180.2 |
| S2 |
C6 |
S7 |
O3B |
310.3 |
157.4 |
| S2 |
C6 |
S7 |
O4B |
61.2 |
22.6 |
| S2 |
C6 |
S7 |
N8 |
183.7 |
270.0 |
| C9 |
N8 |
S7 |
C6 |
293.6 |
60.0 |
| S7 |
C6 |
C5 |
H5 |
356.7 |
0.2 |
| C5 |
C6 |
S7 |
S2 |
182.9 |
179.8 |
| O3B |
S7 |
C6 |
O4B |
249.1 |
134.9 |
| O3B |
S7 |
C6 |
N8 |
126.6 |
247.4 |
| O4B |
S7 |
C6 |
N8 |
237.5 |
112.6 |
| C6 |
S7 |
N8 |
HN8 |
58.9 |
239.9 |
| C9 |
N8 |
S7 |
O3B |
169.7 |
172.6 |
| C6 |
S7 |
O3B |
O4B |
112.6 |
236.8 |
| C6 |
S7 |
O3B |
N8 |
235.0 |
113.7 |
| O4B |
S7 |
O3B |
N8 |
122.4 |
236.9 |
| O3B |
S7 |
N8 |
HN8 |
295.0 |
352.5 |
| C9 |
N8 |
S7 |
O4B |
52.3 |
307.4 |
| C6 |
S7 |
O4B |
O3B |
245.2 |
123.2 |
| C6 |
S7 |
O4B |
N8 |
121.8 |
246.3 |
| O3B |
S7 |
O4B |
N8 |
236.6 |
123.1 |
| O4B |
S7 |
N8 |
HN8 |
177.6 |
127.4 |
| S7 |
N8 |
C9 |
H91 |
121.3 |
59.9 |
| S7 |
N8 |
C9 |
H92 |
11.9 |
300.1 |
| C9 |
N8 |
S7 |
HN8 |
234.7 |
180.0 |
| C6 |
S7 |
N8 |
O3B |
123.9 |
247.4 |
| C6 |
S7 |
N8 |
O4B |
241.2 |
112.6 |
| O3B |
S7 |
N8 |
O4B |
117.3 |
225.2 |
| HN8 |
N8 |
C9 |
H91 |
356.0 |
240.0 |
| HN8 |
N8 |
C9 |
H92 |
246.6 |
120.1 |
| C9 |
N8 |
HN8 |
S7 |
127.1 |
180.0 |