PDB Chemical Component AL2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AL2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 S1 1.716 1.762
C3 C4 1.370 1.352
C3 S2 1.715 1.788
O5 C10 1.419 1.429
O5 HO5 0.950 0.967
C9 C10 1.547 1.520
C9 N8 1.452 1.475
C9 H91 1.115 1.090
C9 H92 1.115 1.090
C10 C5 1.550 1.520
C10 H10 1.115 1.089
C11 C12 1.402 1.389
C11 C16 1.401 1.388
C11 N8 1.341 1.399
C12 C13 1.393 1.381
C12 H12 1.103 1.080
C13 C14 1.396 1.386
C13 H13 1.103 1.080
C14 C15 1.403 1.387
C14 O6 1.383 1.360
C15 C16 1.393 1.380
C15 H15 1.103 1.080
C16 H16 1.103 1.080
O1A S1 1.409 1.420
O2A S1 1.412 1.420
N21 S1 1.474 1.656
N21 HNL1 1.019 0.970
N21 HNL2 1.020 0.969
C4 C5 1.371 1.398
C4 H4 1.104 1.080
C5 C6 1.384 1.361
C6 S2 1.712 1.765
C6 S7 1.717 1.750
S7 O3B 1.425 1.422
S7 O4B 1.430 1.420
S7 N8 1.518 1.677
O6 C17 1.437 1.429
C17 H171 1.115 1.090
C17 H172 1.115 1.090
C17 H173 1.115 1.089

Bond Angles for AL2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S1 C3 C4 128.2 129.1
S1 C3 S2 121.1 129.0
C3 S1 O1A 111.8 105.7
C3 S1 O2A 104.8 105.8
C3 S1 N21 110.9 107.4
C4 C3 S2 110.7 101.9
C3 C4 C5 115.8 120.4
C3 C4 H4 122.1 119.8
C3 S2 C6 90.2 97.4
C10 O5 HO5 106.4 106.8
O5 C10 C9 106.4 108.9
O5 C10 C5 109.5 108.8
O5 C10 H10 113.4 108.8
C10 C9 N8 102.4 111.4
C10 C9 H91 114.9 109.1
C10 C9 H92 114.9 109.1
C9 C10 C5 114.7 112.5
C9 C10 H10 108.1 108.9
N8 C9 H91 114.9 109.1
N8 C9 H92 114.9 109.1
C9 N8 C11 121.7 122.5
C9 N8 S7 108.6 115.0
H91 C9 H92 95.6 109.0
C5 C10 H10 105.0 108.9
C10 C5 C4 134.3 123.2
C10 C5 C6 116.3 121.3
C12 C11 C16 120.9 119.9
C12 C11 N8 120.5 120.0
C11 C12 C13 119.6 120.0
C11 C12 H12 120.5 120.0
C16 C11 N8 118.6 120.1
C11 C16 C15 119.6 120.0
C11 C16 H16 120.5 120.0
C11 N8 S7 120.7 122.5
C13 C12 H12 119.9 120.0
C12 C13 C14 119.3 120.1
C12 C13 H13 120.2 120.0
C14 C13 H13 120.5 120.0
C13 C14 C15 121.3 120.0
C13 C14 O6 117.1 120.0
C15 C14 O6 121.5 120.0
C14 C15 C16 119.2 120.1
C14 C15 H15 120.7 120.0
C14 O6 C17 114.7 106.8
C16 C15 H15 120.0 120.0
C15 C16 H16 119.9 120.0
O1A S1 O2A 107.8 125.3
O1A S1 N21 110.4 105.8
O2A S1 N21 111.0 105.8
S1 N21 HNL1 110.9 120.0
S1 N21 HNL2 111.6 120.0
HNL1 N21 HNL2 111.7 120.0
C5 C4 H4 122.1 119.8
C4 C5 C6 109.4 115.5
C5 C6 S2 113.8 104.8
C5 C6 S7 122.5 125.4
S2 C6 S7 123.7 129.9
C6 S7 O3B 108.0 106.4
C6 S7 O4B 106.2 106.5
C6 S7 N8 103.7 102.9
O3B S7 O4B 109.5 126.0
O3B S7 N8 113.5 106.4
O4B S7 N8 115.3 106.5
O6 C17 H171 114.7 109.4
O6 C17 H172 110.3 109.4
O6 C17 H173 110.3 109.5
H171 C17 H172 110.4 109.5
H171 C17 H173 110.3 109.5
H172 C17 H173 99.9 109.5

Torsion Angles for AL2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C3 S1 S2 180.4 180.0
S1 C3 C4 C5 179.5 180.1
S1 C3 C4 H4 359.5 0.2
S1 C3 S2 C6 179.9 180.2
O1A S1 C3 O2A 243.5 134.8
O1A S1 C3 N21 123.7 247.4
O2A S1 C3 N21 240.1 112.6
C3 S1 N21 HNL1 180.0 180.1
C3 S1 N21 HNL2 54.7 360.0
S1 C3 C4 S2 179.6 180.0
C4 C3 S1 O1A 89.0 337.4
C4 C3 S1 O2A 205.5 202.6
C4 C3 S1 N21 325.4 90.0
C4 C3 S2 C6 359.5 0.1
C10 C5 C4 C3 183.0 179.2
C5 C4 C3 H4 180.0 179.9
C3 C4 C5 C6 0.9 359.5
S1 C3 S2 C4 180.4 180.0
S2 C3 S1 O1A 268.6 157.4
S2 C3 S1 O2A 25.1 22.6
S2 C3 S1 N21 144.9 269.9
S2 C3 C4 C5 359.9 0.2
S2 C3 C4 H4 179.9 180.3
C5 C6 S2 C3 1.0 359.6
C3 S2 C6 S7 183.3 179.2
O5 C10 C9 N8 179.3 178.5
O5 C10 C9 H91 304.5 58.0
O5 C10 C9 H92 54.0 299.0
C9 C10 O5 C5 235.5 237.1
C9 C10 O5 H10 118.7 118.5
C5 C10 O5 H10 243.2 241.5
O5 C10 C5 C4 42.1 33.8
O5 C10 C5 C6 224.3 213.5
HO5 O5 C10 C9 180.0 180.0
HO5 O5 C10 C5 304.4 302.9
HO5 O5 C10 H10 61.3 61.5
C9 C10 O5 HO5 180.0 180.0
O5 C10 C9 C5 121.2 120.7
O5 C10 C9 H10 237.9 241.5
N8 C9 C10 H91 234.7 120.5
N8 C9 C10 H92 125.3 239.5
C10 C9 N8 C11 129.7 114.2
C10 C9 N8 S7 276.9 294.5
H91 C9 C10 H92 250.6 119.0
C5 C10 C9 H10 116.7 120.8
C9 C10 C5 C4 161.6 154.6
C9 C10 C5 C6 343.8 334.2
C10 C9 N8 H91 125.3 239.5
C10 C9 N8 H92 234.8 120.5
N8 C9 C10 C5 58.1 57.8
N8 C9 C10 H10 301.4 297.0
H91 C9 N8 H92 109.5 241.0
C12 C11 N8 C9 46.4 150.0
C16 C11 N8 C9 228.7 330.0
C11 N8 C9 S7 212.8 179.7
C6 S7 N8 C9 59.5 36.6
O3B S7 N8 C9 302.5 284.9
O4B S7 N8 C9 175.2 148.4
C10 C9 H91 N8 241.5 121.9
C10 C9 H91 H92 120.7 240.9
H91 C9 C10 C5 183.3 297.3
H91 C9 C10 H10 66.7 176.5
N8 C9 H91 H92 239.2 119.0
H91 C9 N8 C11 4.5 234.7
H91 C9 N8 S7 151.6 55.0
C10 C9 H92 N8 118.5 238.1
C10 C9 H92 H91 239.3 119.1
H92 C9 C10 C5 292.8 178.3
H92 C9 C10 H10 176.1 57.5
N8 C9 H92 H91 120.8 241.0
H92 C9 N8 C11 255.0 353.7
H92 C9 N8 S7 42.1 174.0
C3 C4 C5 C10 183.0 179.2
C5 C10 O5 HO5 304.4 302.9
O5 C10 C5 C9 240.5 239.3
O5 C10 C5 H10 122.0 118.5
C5 C10 C9 N8 58.1 57.8
C5 C10 C9 H91 183.3 297.3
C5 C10 C9 H92 292.8 178.3
C9 C10 C5 H10 241.5 239.2
C10 C5 C4 H4 3.0 359.1
C4 C5 C10 C6 177.7 180.3
C10 C5 C6 S2 177.0 180.8
C10 C5 C6 S7 354.8 1.2
H10 C10 O5 HO5 61.3 61.5
O5 C10 H10 C9 117.7 118.5
O5 C10 H10 C5 240.5 241.5
H10 C10 C9 N8 301.4 297.0
H10 C10 C9 H91 66.7 176.5
H10 C10 C9 H92 176.1 57.5
C9 C10 H10 C5 122.8 123.0
H10 C10 C5 C4 280.0 275.4
H10 C10 C5 C6 102.3 95.0
C9 N8 C11 C12 46.4 150.0
C16 C11 C12 N8 177.7 180.0
C12 C11 C16 C15 0.8 359.7
C12 C11 C16 H16 180.8 180.0
C12 C11 N8 S7 263.1 329.7
C13 C12 C11 H12 180.1 180.1
C11 C12 C13 C14 1.2 359.9
C11 C12 C13 H13 181.2 180.0
C9 N8 C11 C16 228.7 330.0
C12 C11 C16 N8 182.3 180.0
C16 C11 C12 C13 358.3 0.1
C16 C11 C12 H12 178.3 180.0
C16 C11 N8 S7 85.4 149.7
C14 C15 C16 C11 0.6 0.5
C11 C16 C15 H15 180.6 180.0
C15 C16 C11 H16 180.0 179.8
C11 N8 C9 H91 4.5 234.7
C11 N8 C9 H92 255.0 353.7
C9 N8 C11 S7 143.3 180.3
C12 C11 N8 C16 177.7 180.0
N8 C11 C12 C13 180.6 180.0
N8 C11 C12 H12 0.6 359.9
N8 C11 C16 C15 178.5 179.8
N8 C11 C16 H16 358.5 0.0
C6 S7 N8 C11 207.1 216.9
O3B S7 N8 C11 90.1 105.2
O4B S7 N8 C11 322.7 328.7
C13 C12 C11 C16 358.3 0.1
C13 C12 C11 N8 180.6 180.0
C11 C12 C13 H12 179.9 179.9
C14 C13 C12 H13 180.0 179.8
C12 C13 C14 C15 0.1 0.4
C12 C13 C14 O6 182.9 180.1
H12 C12 C11 C16 178.3 180.0
H12 C12 C11 N8 0.6 359.9
C11 C12 H12 C13 180.1 180.1
H12 C12 C13 C14 181.3 180.0
H12 C12 C13 H13 1.3 0.1
C14 C13 C12 H12 181.3 180.0
C12 C13 C14 H13 180.0 180.2
C15 C14 C13 O6 177.2 180.4
C13 C14 C15 C16 358.9 359.4
C13 C14 C15 H15 178.9 179.9
C13 C14 O6 C17 272.0 180.1
H13 C13 C12 H12 1.3 0.1
C12 C13 H13 C14 180.0 179.8
H13 C13 C14 C15 180.2 180.2
H13 C13 C14 O6 2.9 359.9
C11 C16 C15 C14 0.6 0.5
C15 C14 C13 H13 180.2 180.2
C13 C14 C15 O6 182.9 179.6
C15 C14 O6 C17 94.8 359.7
C16 C15 C14 H15 180.0 179.5
C14 C15 C16 H16 180.6 180.3
O6 C14 C13 H13 2.9 359.9
C13 C14 O6 C15 177.2 180.4
O6 C14 C15 C16 176.1 179.8
O6 C14 C15 H15 356.0 0.3
C14 O6 C17 H171 179.9 180.1
C14 O6 C17 H172 305.3 300.0
C14 O6 C17 H173 54.7 60.0
C15 C16 C11 N8 178.5 179.8
C11 C16 C15 H16 180.0 180.2
C16 C15 C14 O6 176.1 179.8
C14 C15 C16 H15 180.0 180.5
H15 C15 C14 O6 356.0 0.3
C14 C15 H15 C16 180.0 179.5
H15 C15 C16 H16 0.6 359.7
H16 C16 C11 N8 358.5 0.0
C11 C16 H16 C15 180.0 179.8
H16 C16 C15 H15 0.6 359.7
O1A S1 C3 C4 89.0 337.4
O1A S1 C3 S2 268.6 157.4
C3 S1 O1A O2A 114.7 236.9
C3 S1 O1A N21 236.0 113.7
O2A S1 O1A N21 121.4 236.8
O1A S1 N21 HNL1 55.5 292.6
O1A S1 N21 HNL2 290.3 112.5
O2A S1 C3 C4 205.5 202.6
O2A S1 C3 S2 25.1 22.6
C3 S1 O2A O1A 240.8 123.1
C3 S1 O2A N21 119.8 246.3
O1A S1 O2A N21 239.0 123.2
O2A S1 N21 HNL1 296.1 67.4
O2A S1 N21 HNL2 170.8 247.3
N21 S1 C3 C4 325.4 90.0
N21 S1 C3 S2 144.9 269.9
C3 S1 N21 O1A 124.4 247.4
C3 S1 N21 O2A 243.9 112.6
O1A S1 N21 O2A 119.5 225.2
HNL1 N21 S1 HNL2 125.3 180.1
S1 N21 HNL1 HNL2 234.7 179.9
S1 N21 HNL2 HNL1 124.9 180.1
C5 C4 C3 S2 359.9 0.2
C3 C4 C5 H4 180.0 180.1
C4 C5 C10 H10 280.0 275.4
C10 C5 C4 C6 182.1 179.7
C4 C5 C6 S2 358.7 0.5
C4 C5 C6 S7 176.5 180.9
H4 C4 C3 S2 179.9 180.3
C3 C4 H4 C5 180.0 179.9
H4 C4 C5 C6 180.8 179.4
C3 S2 C6 C5 1.0 359.6
C6 C5 C10 H10 102.3 95.0
C10 C5 C6 C4 178.3 180.3
C6 C5 C4 H4 180.8 179.4
S2 C6 C5 S7 182.3 179.6
C5 C6 S7 O3B 106.2 106.2
C5 C6 S7 O4B 223.6 242.8
C5 C6 S7 N8 345.5 354.6
C5 C6 S2 S7 177.7 180.4
S2 C6 S7 O3B 283.7 286.7
S2 C6 S7 O4B 41.1 63.2
S2 C6 S7 N8 163.0 175.0
C9 N8 S7 C6 59.5 36.6
C11 N8 S7 C6 207.1 216.9
C5 C6 S7 S2 182.5 179.6
O3B S7 C6 O4B 242.6 223.4
O3B S7 C6 N8 120.7 111.6
O4B S7 C6 N8 238.1 248.2
C9 N8 S7 O3B 302.5 284.9
C11 N8 S7 O3B 90.1 105.2
C6 S7 O3B O4B 115.2 125.5
C6 S7 O3B N8 245.5 250.8
O4B S7 O3B N8 130.3 125.4
C9 N8 S7 O4B 175.2 148.4
C11 N8 S7 O4B 322.7 328.7
C6 S7 O4B O3B 243.6 234.6
C6 S7 O4B N8 114.2 109.3
O3B S7 O4B N8 230.6 234.7
S7 N8 C9 H91 151.6 55.0
S7 N8 C9 H92 42.1 174.0
C9 N8 S7 C11 212.5 179.7
C6 S7 N8 O3B 117.0 111.7
C6 S7 N8 O4B 244.4 248.2
O3B S7 N8 O4B 127.4 136.5
H171 C17 O6 H172 234.6 240.1
H171 C17 O6 H173 125.2 120.0
H172 C17 O6 H173 250.6 240.0
O6 C17 H171 H172 125.3 119.9
O6 C17 H171 H173 234.8 240.0
H172 C17 H171 H173 109.5 120.1
O6 C17 H172 H171 232.2 240.1
O6 C17 H172 H173 116.1 120.0
H171 C17 H172 H173 243.9 239.9
O6 C17 H173 H171 127.7 120.0
O6 C17 H173 H172 243.9 240.0
H171 C17 H173 H172 116.2 120.0