PDB Chemical Component AL1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AL1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 S1 1.724 1.762
C3 S2 1.716 1.788
C3 C4 1.385 1.352
C9 C10 1.520 1.520
C9 N8 1.452 1.476
C9 H91 1.115 1.090
C9 H92 1.116 1.090
C10 C5 1.525 1.520
C10 H101 1.116 1.090
C10 H102 1.114 1.091
C19 C20 1.385 1.382
C19 C18 1.392 1.382
C19 H19 1.103 1.080
C20 C21 1.410 1.387
C20 H20 1.102 1.081
C21 C22 1.381 1.386
C21 O23 1.299 1.359
C22 C17 1.375 1.387
C22 H22 1.103 1.081
C24 O23 1.447 1.429
C24 H241 1.115 1.090
C24 H242 1.115 1.090
C24 H243 1.114 1.089
N21 S1 1.479 1.656
N21 HNL1 1.019 0.970
N21 HNL2 1.021 0.970
S1 O1A 1.415 1.421
S1 O2A 1.402 1.420
S2 C6 1.699 1.764
C6 C5 1.417 1.362
C6 S7 1.717 1.750
C5 C4 1.379 1.398
C4 H4 1.103 1.080
N8 S7 1.518 1.677
N8 C17 1.337 1.396
S7 O3B 1.491 1.421
S7 O4B 1.486 1.421
C17 C18 1.396 1.389
C18 H18 1.104 1.079

Bond Angles for AL1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S1 C3 S2 120.2 129.1
S1 C3 C4 124.8 129.1
C3 S1 N21 116.3 107.4
C3 S1 O1A 103.8 105.8
C3 S1 O2A 102.6 105.7
S2 C3 C4 115.0 101.9
C3 S2 C6 87.7 97.4
C3 C4 C5 112.3 120.4
C3 C4 H4 124.1 119.8
C10 C9 N8 108.0 111.4
C10 C9 H91 112.8 109.1
C10 C9 H92 112.7 109.1
C9 C10 C5 113.2 112.6
C9 C10 H101 110.9 108.8
C9 C10 H102 110.8 108.9
N8 C9 H91 112.8 109.1
N8 C9 H92 112.8 109.1
C9 N8 S7 118.2 115.0
C9 N8 C17 117.3 122.5
H91 C9 H92 97.6 109.1
C5 C10 H101 110.8 108.9
C5 C10 H102 110.9 108.8
C10 C5 C6 119.2 121.2
C10 C5 C4 131.8 123.2
H101 C10 H102 99.4 108.7
C20 C19 C18 119.6 120.1
C20 C19 H19 119.9 119.9
C19 C20 C21 118.9 120.1
C19 C20 H20 119.7 119.9
C18 C19 H19 120.4 119.9
C19 C18 C17 119.1 120.0
C19 C18 H18 120.4 120.0
C21 C20 H20 121.4 119.9
C20 C21 C22 122.7 119.9
C20 C21 O23 122.7 120.0
C22 C21 O23 114.6 120.1
C21 C22 C17 116.5 119.9
C21 C22 H22 122.0 120.0
C21 O23 C24 116.1 106.8
C17 C22 H22 121.6 120.1
C22 C17 N8 117.1 120.1
C22 C17 C18 123.2 119.9
O23 C24 H241 116.1 109.5
O23 C24 H242 109.8 109.5
O23 C24 H243 109.8 109.4
H241 C24 H242 109.9 109.5
H241 C24 H243 109.9 109.4
H242 C24 H243 100.3 109.5
S1 N21 HNL1 116.2 120.0
S1 N21 HNL2 109.7 120.0
N21 S1 O1A 106.6 105.8
N21 S1 O2A 110.2 105.8
HNL1 N21 HNL2 109.8 120.0
O1A S1 O2A 117.7 125.4
S2 C6 C5 116.0 104.8
S2 C6 S7 120.4 129.9
C5 C6 S7 123.6 125.4
C6 C5 C4 109.0 115.5
C6 S7 N8 101.9 102.9
C6 S7 O3B 104.5 106.5
C6 S7 O4B 115.6 106.5
C5 C4 H4 123.6 119.8
S7 N8 C17 122.9 122.5
N8 S7 O3B 115.0 106.4
N8 S7 O4B 116.4 106.3
N8 C17 C18 119.6 120.0
O3B S7 O4B 103.3 126.1
C17 C18 H18 120.6 120.0

Torsion Angles for AL1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2 C3 S1 C4 179.7 180.1
S1 C3 S2 C6 180.8 180.1
S1 C3 C4 C5 179.8 180.2
S1 C3 C4 H4 359.8 0.3
C3 S1 N21 HNL1 180.0 180.0
C3 S1 N21 HNL2 54.7 0.0
N21 S1 C3 O1A 243.4 247.4
N21 S1 C3 O2A 120.3 112.6
O1A S1 C3 O2A 236.9 225.2
S1 C3 S2 C4 180.3 179.9
S2 C3 S1 N21 137.7 270.1
S2 C3 S1 O1A 254.3 22.6
S2 C3 S1 O2A 17.4 157.4
S2 C3 C4 C5 0.1 0.2
S2 C3 C4 H4 180.1 180.2
C3 S2 C6 C5 359.0 359.6
C3 S2 C6 S7 177.2 179.2
S1 C3 C4 S2 179.7 180.1
C4 C3 S1 N21 318.0 90.0
C4 C3 S1 O1A 74.7 202.5
C4 C3 S1 O2A 197.7 337.3
C4 C3 S2 C6 0.5 0.2
C10 C5 C4 C3 177.1 179.3
C6 C5 C4 C3 359.2 359.5
C5 C4 C3 H4 180.0 179.9
N8 C9 C10 H91 234.7 120.5
N8 C9 C10 H92 125.3 239.5
C10 C9 N8 S7 287.3 294.5
C10 C9 N8 C17 121.0 114.2
H91 C9 C10 H92 250.6 119.0
C5 C10 C9 H101 234.7 239.2
C5 C10 C9 H102 125.3 120.8
C9 C10 C5 C6 336.8 334.3
C9 C10 C5 C4 159.2 154.5
H101 C10 C9 H102 250.6 241.6
C10 C9 N8 H91 125.3 239.5
C10 C9 N8 H92 234.7 120.5
N8 C9 C10 C5 52.9 57.8
N8 C9 C10 H101 178.1 178.6
N8 C9 C10 H102 287.6 297.0
H91 C9 N8 H92 109.4 240.9
C22 C17 N8 C9 261.2 123.1
C6 S7 N8 C9 49.6 36.6
S7 N8 C9 C17 166.3 180.3
C9 N8 S7 O3B 297.3 148.4
C9 N8 S7 O4B 176.3 284.9
C9 N8 C17 C18 77.8 302.9
C10 C9 H91 N8 237.3 121.9
C10 C9 H91 H92 118.6 241.0
H91 C9 C10 C5 178.2 297.3
H91 C9 C10 H101 303.5 58.1
H91 C9 C10 H102 52.9 176.5
N8 C9 H91 H92 241.3 119.1
H91 C9 N8 S7 162.0 55.0
H91 C9 N8 C17 355.7 234.7
C10 C9 H92 N8 122.6 238.1
C10 C9 H92 H91 241.4 119.0
H92 C9 C10 C5 287.6 178.2
H92 C9 C10 H101 52.8 299.1
H92 C9 C10 H102 162.3 57.5
N8 C9 H92 H91 118.7 240.9
H92 C9 N8 S7 52.5 174.1
H92 C9 N8 C17 246.2 353.8
C3 C4 C5 C10 177.1 179.3
C5 C10 C9 N8 52.9 57.8
C5 C10 C9 H91 178.2 297.3
C5 C10 C9 H92 287.6 178.2
C9 C10 C5 H101 125.3 120.8
C9 C10 C5 H102 234.7 239.1
H101 C10 C5 H102 109.4 118.3
S2 C6 C5 C10 183.1 180.8
C10 C5 C6 S7 5.0 1.2
C6 C5 C10 C4 177.7 179.8
C10 C5 C4 H4 357.0 359.2
H101 C10 C9 N8 178.1 178.6
H101 C10 C9 H91 303.5 58.1
H101 C10 C9 H92 52.8 299.1
C9 C10 H101 C5 233.4 236.9
C9 C10 H101 H102 116.7 118.5
C5 C10 H101 H102 243.3 241.6
H101 C10 C5 C6 211.5 213.5
H101 C10 C5 C4 33.9 33.7
H102 C10 C9 N8 287.6 297.0
H102 C10 C9 H91 52.9 176.5
H102 C10 C9 H92 162.3 57.5
C9 C10 H102 C5 126.6 123.1
C9 C10 H102 H101 243.3 241.5
C5 C10 H102 H101 116.7 118.5
H102 C10 C5 C6 102.1 95.1
H102 C10 C5 C4 284.5 275.4
C18 C19 C20 H19 180.0 180.0
C20 C19 C18 C17 359.9 0.0
C20 C19 C18 H18 180.0 180.0
C21 C20 C19 H20 180.0 180.0
C19 C20 C21 C22 0.1 0.3
C19 C20 C21 O23 179.3 180.0
C20 C19 C18 H19 180.0 180.0
C18 C19 C20 C21 359.8 359.9
C18 C19 C20 H20 179.8 180.0
C22 C17 C18 C19 0.4 359.8
N8 C17 C18 C19 184.0 180.0
C17 C18 C19 H18 180.0 180.0
C20 C19 H19 C18 180.0 180.0
H19 C19 C20 C21 179.9 179.9
H19 C19 C20 H20 359.8 360.0
H19 C19 C18 C17 179.9 180.0
H19 C19 C18 H18 359.9 0.0
C21 C20 C19 C18 359.8 359.9
C21 C20 C19 H19 179.9 179.9
C19 C20 C21 H20 180.0 180.0
C22 C21 C20 O23 180.8 180.3
C20 C21 C22 C17 0.2 359.4
C20 C21 C22 H22 180.2 180.0
C20 C21 O23 C24 359.5 0.0
H20 C20 C19 C18 179.8 180.0
H20 C20 C19 H19 359.8 360.0
C19 C20 H20 C21 180.0 180.0
H20 C20 C21 C22 180.1 180.3
H20 C20 C21 O23 359.3 360.0
C22 C21 C20 H20 180.1 180.3
C20 C21 C22 O23 179.3 179.7
C22 C21 O23 C24 178.7 179.7
C17 C22 C21 H22 180.1 179.5
C21 C22 C17 N8 176.0 180.3
C21 C22 C17 C18 359.5 0.5
O23 C21 C20 H20 359.3 360.0
C20 C21 O23 C22 180.7 180.3
O23 C21 C22 C17 181.0 179.8
O23 C21 C22 H22 0.9 0.3
C21 O23 C24 H241 180.0 180.0
C21 O23 C24 H242 305.3 300.0
C21 O23 C24 H243 54.7 60.0
C9 N8 C17 C22 261.2 123.1
C19 C18 C17 C22 0.4 359.8
C17 C22 C21 O23 181.0 179.8
C21 C22 C17 H22 179.9 180.5
S7 N8 C17 C22 95.6 302.8
N8 C17 C22 C18 176.5 179.8
C22 C17 C18 H18 180.4 179.7
H22 C22 C21 O23 0.9 0.3
C21 C22 H22 C17 180.1 179.5
H22 C22 C17 N8 356.1 359.8
H22 C22 C17 C18 179.6 180.0
H241 C24 O23 H242 234.7 239.9
H241 C24 O23 H243 125.3 119.9
H242 C24 O23 H243 250.6 240.0
O23 C24 H241 H242 125.3 120.1
O23 C24 H241 H243 234.7 240.1
H242 C24 H241 H243 109.5 120.0
O23 C24 H242 H241 231.2 240.0
O23 C24 H242 H243 115.6 120.0
H241 C24 H242 H243 244.3 240.0
O23 C24 H243 H241 128.8 120.0
O23 C24 H243 H242 244.4 240.0
H241 C24 H243 H242 115.7 120.0
N21 S1 C3 S2 137.7 270.1
N21 S1 C3 C4 318.0 90.0
C3 S1 N21 O1A 115.1 112.6
C3 S1 N21 O2A 243.9 247.4
HNL1 N21 S1 HNL2 125.3 180.0
O1A S1 N21 O2A 128.8 134.8
S1 N21 HNL1 HNL2 234.8 180.0
HNL1 N21 S1 O1A 64.9 67.4
HNL1 N21 S1 O2A 296.1 292.6
S1 N21 HNL2 HNL1 128.9 180.0
HNL2 N21 S1 O1A 299.6 247.4
HNL2 N21 S1 O2A 170.8 112.6
O1A S1 C3 S2 254.3 22.6
O1A S1 C3 C4 74.7 202.5
C3 S1 O1A N21 236.7 246.3
C3 S1 O1A O2A 112.5 123.1
O1A S1 N21 HNL1 64.9 67.4
O1A S1 N21 HNL2 299.6 247.4
N21 S1 O1A O2A 235.7 236.8
O2A S1 C3 S2 17.4 157.4
O2A S1 C3 C4 197.7 337.3
C3 S1 O2A N21 124.4 113.7
C3 S1 O2A O1A 246.8 236.9
O2A S1 N21 HNL1 296.1 292.6
O2A S1 N21 HNL2 170.8 112.6
N21 S1 O2A O1A 122.4 123.2
C6 S2 C3 C4 0.5 0.2
C10 C5 C6 S2 183.1 180.8
C5 C6 S2 S7 181.8 180.4
S2 C6 C5 C4 1.2 0.6
S2 C6 S7 N8 166.8 175.1
S2 C6 S7 O3B 286.9 63.3
S2 C6 S7 O4B 39.7 286.6
C3 C4 C5 C6 359.2 359.5
C6 C5 C10 H101 211.5 213.5
C6 C5 C10 H102 102.1 95.1
C10 C5 C6 C4 181.8 180.2
S2 C6 C5 S7 178.1 179.6
C5 C6 S7 N8 344.9 354.6
C5 C6 S7 O3B 104.9 242.8
C5 C6 S7 O4B 217.7 106.1
C6 C5 C4 H4 179.2 179.4
C9 N8 S7 C6 49.6 36.6
S2 C6 S7 C5 182.0 180.5
S7 C6 C5 C4 183.1 180.9
C6 S7 N8 C17 215.1 216.9
N8 S7 C6 O3B 239.9 111.7
N8 S7 C6 O4B 127.2 248.4
O3B S7 C6 O4B 247.2 136.7
C3 C4 C5 H4 180.0 180.1
C4 C5 C10 H101 33.9 33.7
C4 C5 C10 H102 284.5 275.4
C10 C5 C4 C6 177.8 179.8
C4 C5 C6 S7 183.1 180.9
C3 C4 H4 C5 180.0 179.9
S7 N8 C9 H91 162.0 55.0
S7 N8 C9 H92 52.5 174.1
C9 N8 S7 C17 194.5 179.7
C22 C17 N8 S7 95.6 302.8
C6 S7 N8 O3B 112.3 248.2
C6 S7 N8 O4B 233.4 111.7
S7 N8 C17 C18 272.2 122.6
O3B S7 N8 O4B 121.0 223.5
C17 N8 C9 H91 355.7 234.7
C17 N8 C9 H92 246.2 353.8
C9 N8 C17 S7 165.6 180.3
C19 C18 C17 N8 184.0 180.0
N8 C17 C22 H22 356.1 359.8
C22 C17 N8 C18 183.4 180.2
C17 N8 S7 O3B 102.7 328.7
C17 N8 S7 O4B 341.7 105.2
N8 C17 C18 H18 4.0 359.9
C6 S7 O3B N8 249.2 109.3
C6 S7 O3B O4B 121.3 234.5
O3B S7 N8 C17 102.7 328.7
N8 S7 O3B O4B 232.1 125.2
C6 S7 O4B N8 119.5 250.8
C6 S7 O4B O3B 246.6 125.5
O4B S7 N8 C17 341.7 105.2
N8 S7 O4B O3B 127.1 234.7
C17 C18 C19 H19 179.9 180.0
C19 C18 C17 H18 180.0 180.0
C18 C17 C22 H22 179.6 180.0
C22 C17 C18 N8 176.4 179.8
H18 C18 C19 H19 359.9 0.0
C19 C18 H18 C17 180.0 180.0