PDB Chemical Component AKZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AKZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.264 |
1.429 |
| N |
CA |
1.466 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| CA |
C |
1.518 |
1.530 |
| CA |
CB |
1.535 |
1.530 |
| CA |
HA |
1.100 |
1.091 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
CB |
1.514 |
1.507 |
| CG |
OD2 |
1.240 |
1.342 |
| OD1 |
CG |
1.246 |
1.208 |
| OD2 |
HD2 |
0.950 |
0.967 |
| O |
HO |
0.950 |
0.967 |
| C |
H1 |
1.100 |
1.089 |
| C |
OXT |
1.430 |
1.428 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for AKZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
O |
HO |
109.5 |
113.9 |
| O |
C |
H1 |
109.4 |
109.5 |
| O |
C |
OXT |
101.0 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
CB |
110.2 |
109.5 |
| N |
CA |
HA |
106.3 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CA |
C |
H1 |
102.0 |
109.5 |
| CA |
C |
OXT |
108.6 |
109.5 |
| CB |
CA |
HA |
109.4 |
109.5 |
| CA |
CB |
HB2 |
107.7 |
109.5 |
| CA |
CB |
HB3 |
107.7 |
109.5 |
| HB2 |
CB |
HB3 |
111.2 |
109.4 |
| CG |
CB |
HB2 |
107.6 |
109.5 |
| CG |
CB |
HB3 |
107.6 |
109.5 |
| OD1 |
CG |
OD2 |
124.1 |
120.0 |
| CG |
OD2 |
HD2 |
109.5 |
117.0 |
| H1 |
C |
OXT |
118.7 |
109.5 |
| C |
OXT |
HXT |
109.5 |
114.0 |
Torsion Angles for AKZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
H1 |
244.1 |
240.0 |
| CA |
C |
O |
OXT |
118.1 |
120.0 |
| H1 |
C |
O |
OXT |
234.0 |
240.0 |
| O |
C |
OXT |
HXT |
180.0 |
60.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
C |
H1 |
77.7 |
300.0 |
| N |
CA |
C |
OXT |
311.5 |
180.0 |
| CB |
CA |
N |
HA |
118.5 |
120.0 |
| N |
CA |
CB |
HB2 |
40.2 |
55.0 |
| N |
CA |
CB |
HB3 |
160.3 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
53.6 |
300.0 |
| H |
N |
CA |
HA |
295.2 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
173.7 |
64.0 |
| H2 |
N |
CA |
HA |
55.2 |
304.0 |
| CA |
C |
O |
HO |
180.0 |
180.0 |
| O |
C |
CA |
H1 |
119.9 |
120.0 |
| O |
C |
CA |
OXT |
246.0 |
240.0 |
| H1 |
C |
CA |
OXT |
126.1 |
120.0 |
| CA |
C |
OXT |
HXT |
55.2 |
300.0 |
| CB |
CA |
N |
H |
53.6 |
300.0 |
| CB |
CA |
N |
H2 |
173.7 |
64.0 |
| N |
CA |
CB |
HA |
243.4 |
240.0 |
| CB |
CA |
C |
H1 |
203.4 |
60.0 |
| CB |
CA |
C |
OXT |
77.2 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
| HA |
CA |
N |
H |
295.2 |
180.0 |
| HA |
CA |
N |
H2 |
55.2 |
304.0 |
| N |
CA |
HA |
CB |
119.0 |
120.0 |
| HA |
CA |
C |
H1 |
321.7 |
180.0 |
| HA |
CA |
C |
OXT |
195.5 |
60.0 |
| HA |
CA |
CB |
HB2 |
156.8 |
175.0 |
| HA |
CA |
CB |
HB3 |
276.8 |
295.0 |
| HB2 |
CB |
CA |
HA |
156.8 |
175.0 |
| CA |
CB |
HB2 |
HB3 |
117.7 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
242.3 |
240.0 |
| HB3 |
CB |
CA |
HA |
276.8 |
295.0 |
| CA |
CB |
HB3 |
HB2 |
242.3 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
117.7 |
120.0 |
| CG |
CB |
CA |
HA |
36.8 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
119.9 |
| OD2 |
CG |
CB |
HB2 |
36.3 |
60.0 |
| OD2 |
CG |
CB |
HB3 |
276.3 |
300.0 |
| OD1 |
CG |
CB |
HB2 |
214.0 |
239.9 |
| OD1 |
CG |
CB |
HB3 |
94.0 |
120.0 |
| OD1 |
CG |
OD2 |
HD2 |
360.0 |
0.1 |
| HO |
O |
C |
H1 |
295.9 |
299.9 |
| HO |
O |
C |
OXT |
61.9 |
60.0 |
| H1 |
C |
O |
HO |
295.9 |
299.9 |
| O |
C |
H1 |
OXT |
115.1 |
120.1 |
| CA |
C |
H1 |
OXT |
240.8 |
240.0 |
| H1 |
C |
OXT |
HXT |
299.5 |
180.0 |
| OXT |
C |
O |
HO |
61.9 |
60.0 |
| O |
C |
OXT |
H1 |
240.5 |
240.0 |
| CA |
C |
OXT |
H1 |
115.7 |
120.0 |