PDB Chemical Component AKD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AKD
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OAA |
CAM |
1.250 |
1.223 |
OAB |
CAM |
1.229 |
1.224 |
BRAC |
CAN |
1.867 |
1.891 |
CAD |
CAE |
1.367 |
1.379 |
CAD |
CAN |
1.363 |
1.388 |
CAE |
CAO |
1.409 |
1.390 |
CAF |
CAN |
1.411 |
1.377 |
CAF |
CAP |
1.375 |
1.399 |
CAG |
CAH |
1.548 |
1.531 |
CAG |
CAI |
1.564 |
1.531 |
CAH |
NAK |
1.478 |
1.469 |
CAI |
CAQ |
1.550 |
1.532 |
CAJ |
NAK |
1.484 |
1.468 |
CAJ |
CAQ |
1.523 |
1.530 |
NAL |
CAO |
1.370 |
1.388 |
NAL |
CAQ |
1.508 |
1.465 |
CAM |
CAP |
1.516 |
1.470 |
CAO |
CAP |
1.414 |
1.404 |
CAD |
HAD |
1.080 |
1.080 |
CAE |
HAE |
1.080 |
1.080 |
CAF |
HAF |
1.080 |
1.081 |
CAG |
HAG |
1.100 |
1.090 |
CAG |
HAGA |
1.100 |
1.089 |
CAH |
HAH |
1.100 |
1.090 |
CAH |
HAHA |
1.100 |
1.089 |
CAI |
HAI |
1.100 |
1.090 |
CAI |
HAIA |
1.100 |
1.090 |
CAJ |
HAJ |
1.100 |
1.091 |
CAJ |
HAJA |
1.100 |
1.090 |
NAK |
HNAK |
1.000 |
1.009 |
NAL |
HNAL |
1.000 |
0.971 |
CAQ |
HAQ |
1.100 |
1.090 |
Bond Angles for AKD
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OAA |
CAM |
OAB |
122.8 |
120.0 |
OAA |
CAM |
CAP |
123.6 |
120.1 |
OAB |
CAM |
CAP |
113.6 |
120.0 |
BRAC |
CAN |
CAD |
127.8 |
119.8 |
BRAC |
CAN |
CAF |
111.3 |
119.8 |
CAE |
CAD |
CAN |
121.5 |
120.4 |
CAD |
CAE |
CAO |
119.2 |
120.1 |
CAE |
CAD |
HAD |
119.3 |
119.8 |
CAD |
CAE |
HAE |
120.4 |
119.9 |
CAD |
CAN |
CAF |
120.8 |
120.3 |
CAN |
CAD |
HAD |
119.3 |
119.8 |
CAE |
CAO |
NAL |
117.6 |
120.1 |
CAE |
CAO |
CAP |
119.4 |
119.7 |
CAO |
CAE |
HAE |
120.4 |
120.0 |
CAN |
CAF |
CAP |
118.6 |
120.0 |
CAN |
CAF |
HAF |
120.7 |
120.0 |
CAF |
CAP |
CAM |
118.6 |
120.2 |
CAF |
CAP |
CAO |
120.3 |
119.5 |
CAP |
CAF |
HAF |
120.7 |
120.0 |
CAH |
CAG |
CAI |
113.5 |
109.3 |
CAG |
CAH |
NAK |
110.1 |
109.5 |
CAH |
CAG |
HAG |
108.2 |
109.5 |
CAH |
CAG |
HAGA |
108.1 |
109.5 |
CAG |
CAH |
HAH |
109.3 |
109.5 |
CAG |
CAH |
HAHA |
109.2 |
109.5 |
CAG |
CAI |
CAQ |
112.4 |
109.1 |
CAI |
CAG |
HAG |
108.2 |
109.5 |
CAI |
CAG |
HAGA |
108.2 |
109.5 |
CAG |
CAI |
HAI |
108.5 |
109.5 |
CAG |
CAI |
HAIA |
108.5 |
109.5 |
CAH |
NAK |
CAJ |
106.1 |
111.2 |
NAK |
CAH |
HAH |
109.2 |
109.5 |
NAK |
CAH |
HAHA |
109.3 |
109.4 |
CAH |
NAK |
HNAK |
110.6 |
111.0 |
CAI |
CAQ |
CAJ |
105.2 |
109.3 |
CAI |
CAQ |
NAL |
108.6 |
109.5 |
CAQ |
CAI |
HAI |
108.5 |
109.5 |
CAQ |
CAI |
HAIA |
108.5 |
109.5 |
CAI |
CAQ |
HAQ |
112.9 |
109.5 |
NAK |
CAJ |
CAQ |
115.0 |
109.6 |
NAK |
CAJ |
HAJ |
107.7 |
109.5 |
NAK |
CAJ |
HAJA |
107.7 |
109.5 |
CAJ |
NAK |
HNAK |
110.6 |
111.0 |
CAJ |
CAQ |
NAL |
109.9 |
109.5 |
CAQ |
CAJ |
HAJ |
107.7 |
109.5 |
CAQ |
CAJ |
HAJA |
107.7 |
109.4 |
CAJ |
CAQ |
HAQ |
111.7 |
109.5 |
CAO |
NAL |
CAQ |
123.4 |
120.0 |
NAL |
CAO |
CAP |
123.0 |
120.2 |
CAO |
NAL |
HNAL |
105.1 |
119.9 |
CAQ |
NAL |
HNAL |
105.1 |
120.0 |
NAL |
CAQ |
HAQ |
108.5 |
109.5 |
CAM |
CAP |
CAO |
121.1 |
120.3 |
HAG |
CAG |
HAGA |
110.8 |
109.5 |
HAH |
CAH |
HAHA |
109.7 |
109.5 |
HAI |
CAI |
HAIA |
110.4 |
109.6 |
HAJ |
CAJ |
HAJA |
111.2 |
109.4 |
Torsion Angles for AKD
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OAB |
CAM |
OAA |
CAP |
181.5 |
180.0 |
CAF |
CAP |
CAM |
OAA |
28.3 |
6.1 |
OAA |
CAM |
CAP |
CAO |
211.0 |
186.1 |
OAA |
CAM |
OAB |
CAP |
178.7 |
180.0 |
CAF |
CAP |
CAM |
OAB |
207.0 |
186.1 |
OAB |
CAM |
CAP |
CAO |
29.7 |
6.1 |
CAE |
CAD |
CAN |
BRAC |
183.8 |
180.0 |
CAD |
CAN |
BRAC |
CAF |
176.1 |
180.0 |
BRAC |
CAN |
CAD |
HAD |
3.8 |
0.3 |
BRAC |
CAN |
CAF |
CAP |
179.7 |
180.0 |
BRAC |
CAN |
CAF |
HAF |
359.7 |
359.9 |
BRAC |
CAN |
CAD |
CAE |
183.8 |
180.0 |
CAE |
CAD |
CAN |
CAF |
359.6 |
359.9 |
CAN |
CAD |
CAE |
HAD |
180.0 |
180.3 |
CAD |
CAE |
CAO |
NAL |
181.9 |
180.0 |
CAD |
CAE |
CAO |
CAP |
359.2 |
360.0 |
CAO |
CAE |
CAD |
HAE |
180.0 |
180.1 |
BRAC |
CAN |
CAD |
CAF |
184.2 |
180.0 |
CAN |
CAD |
CAE |
CAO |
359.2 |
0.0 |
CAE |
CAD |
CAN |
HAD |
180.0 |
179.7 |
CAN |
CAD |
CAE |
HAE |
179.2 |
180.0 |
CAD |
CAN |
CAF |
CAP |
3.3 |
0.0 |
CAD |
CAN |
CAF |
HAF |
183.2 |
180.0 |
CAO |
CAE |
CAD |
CAN |
359.2 |
0.0 |
CAO |
CAE |
CAD |
HAD |
179.1 |
179.7 |
CAD |
CAE |
CAO |
HAE |
180.0 |
179.9 |
CAF |
CAP |
CAO |
CAE |
3.7 |
0.0 |
CAE |
CAO |
NAL |
CAQ |
358.0 |
354.5 |
NAL |
CAO |
CAE |
CAP |
182.7 |
180.0 |
CAE |
CAO |
NAL |
HNAL |
118.1 |
174.6 |
CAM |
CAP |
CAO |
CAE |
180.9 |
180.0 |
BRAC |
CAN |
CAF |
CAD |
176.4 |
180.0 |
CAF |
CAN |
CAD |
HAD |
179.6 |
180.3 |
CAN |
CAF |
CAP |
CAM |
177.8 |
180.0 |
CAN |
CAF |
CAP |
CAO |
355.1 |
360.0 |
CAP |
CAF |
CAN |
HAF |
180.0 |
180.1 |
OAA |
CAM |
CAP |
CAF |
28.3 |
6.1 |
OAB |
CAM |
CAP |
CAF |
207.0 |
186.1 |
CAE |
CAO |
CAP |
CAF |
3.7 |
0.0 |
CAN |
CAF |
CAP |
HAF |
180.0 |
179.9 |
NAL |
CAO |
CAP |
CAF |
180.8 |
180.0 |
CAM |
CAP |
CAF |
CAO |
182.7 |
180.0 |
CAH |
CAG |
CAI |
CAQ |
312.3 |
302.3 |
CAI |
CAG |
CAH |
HAG |
240.0 |
240.1 |
CAI |
CAG |
CAH |
HAGA |
120.0 |
120.0 |
CAH |
CAG |
CAI |
HAI |
72.3 |
62.2 |
CAH |
CAG |
CAI |
HAIA |
192.3 |
182.4 |
CAG |
CAH |
NAK |
CAJ |
300.1 |
298.3 |
NAK |
CAH |
CAG |
HAH |
240.0 |
240.0 |
NAK |
CAH |
CAG |
HAHA |
120.0 |
120.0 |
CAG |
CAH |
NAK |
HNAK |
60.1 |
62.4 |
HAG |
CAG |
CAH |
HAGA |
240.0 |
239.9 |
HAH |
CAH |
CAG |
HAHA |
240.0 |
240.0 |
CAI |
CAG |
CAH |
NAK |
52.6 |
59.2 |
CAH |
CAG |
CAI |
HAG |
120.0 |
119.9 |
CAH |
CAG |
CAI |
HAGA |
240.0 |
240.0 |
CAI |
CAG |
CAH |
HAH |
172.6 |
179.2 |
CAI |
CAG |
CAH |
HAHA |
292.6 |
299.2 |
CAG |
CAI |
CAQ |
CAJ |
49.0 |
57.6 |
CAG |
CAI |
CAQ |
NAL |
166.6 |
177.6 |
CAQ |
CAI |
CAG |
HAI |
240.0 |
240.1 |
CAQ |
CAI |
CAG |
HAIA |
120.0 |
119.9 |
CAG |
CAI |
CAQ |
HAQ |
286.9 |
297.7 |
HAG |
CAG |
CAI |
HAGA |
120.0 |
120.1 |
HAI |
CAI |
CAG |
HAIA |
240.0 |
239.8 |
NAK |
CAH |
CAG |
CAI |
52.6 |
59.2 |
NAK |
CAH |
CAG |
HAG |
172.6 |
179.1 |
NAK |
CAH |
CAG |
HAGA |
292.6 |
299.2 |
CAG |
CAH |
NAK |
HAH |
120.0 |
120.0 |
CAG |
CAH |
NAK |
HAHA |
240.0 |
240.0 |
CAH |
NAK |
CAJ |
CAQ |
69.9 |
61.7 |
CAH |
NAK |
CAJ |
HAJ |
189.9 |
181.8 |
CAH |
NAK |
CAJ |
HAJA |
309.8 |
301.7 |
CAJ |
NAK |
CAH |
HNAK |
240.0 |
235.9 |
HAH |
CAH |
NAK |
HAHA |
120.0 |
120.0 |
CAQ |
CAI |
CAG |
HAG |
192.3 |
182.4 |
CAQ |
CAI |
CAG |
HAGA |
72.3 |
62.3 |
CAG |
CAI |
CAQ |
HAI |
120.0 |
119.9 |
CAG |
CAI |
CAQ |
HAIA |
240.0 |
240.1 |
NAK |
CAJ |
CAQ |
CAI |
297.1 |
300.8 |
CAJ |
CAQ |
CAI |
NAL |
242.4 |
240.0 |
CAI |
CAQ |
CAJ |
HAJ |
177.1 |
180.8 |
CAI |
CAQ |
CAJ |
HAJA |
57.1 |
60.8 |
CAJ |
CAQ |
CAI |
HAQ |
122.1 |
119.9 |
CAO |
NAL |
CAQ |
CAI |
141.8 |
155.0 |
CAI |
CAQ |
NAL |
HNAL |
21.8 |
334.9 |
NAL |
CAQ |
CAI |
HAQ |
239.7 |
239.9 |
HAI |
CAI |
CAQ |
HAIA |
120.0 |
120.2 |
CAJ |
NAK |
CAH |
HAH |
180.1 |
178.3 |
CAJ |
NAK |
CAH |
HAHA |
60.1 |
58.3 |
CAH |
NAK |
CAJ |
HNAK |
120.0 |
124.1 |
CAI |
CAQ |
CAJ |
NAK |
297.1 |
300.8 |
NAK |
CAJ |
CAQ |
NAL |
180.3 |
180.9 |
CAQ |
CAJ |
NAK |
HAJ |
240.0 |
240.0 |
CAQ |
CAJ |
NAK |
HAJA |
120.0 |
120.0 |
NAK |
CAJ |
CAQ |
HAQ |
59.9 |
60.7 |
HAJ |
CAJ |
NAK |
HAJA |
240.0 |
240.1 |
CAI |
CAQ |
CAJ |
NAL |
116.7 |
119.9 |
CAJ |
CAQ |
CAI |
HAI |
289.0 |
297.7 |
CAJ |
CAQ |
CAI |
HAIA |
169.0 |
177.6 |
CAI |
CAQ |
CAJ |
HAQ |
237.2 |
240.1 |
NAK |
CAJ |
CAQ |
HAJ |
120.0 |
120.1 |
NAK |
CAJ |
CAQ |
HAJA |
240.0 |
240.0 |
CAQ |
CAJ |
NAK |
HNAK |
309.9 |
297.7 |
CAO |
NAL |
CAQ |
CAJ |
256.4 |
274.8 |
CAJ |
CAQ |
NAL |
HNAL |
136.4 |
94.7 |
NAL |
CAQ |
CAJ |
HAQ |
120.4 |
120.1 |
HAJ |
CAJ |
CAQ |
HAJA |
120.0 |
119.9 |
CAE |
CAO |
NAL |
CAP |
177.2 |
180.0 |
NAL |
CAO |
CAE |
HAE |
1.9 |
0.0 |
CAF |
CAP |
CAO |
NAL |
180.8 |
180.0 |
CAI |
CAQ |
NAL |
CAO |
141.8 |
155.0 |
CAJ |
CAQ |
NAL |
CAO |
256.4 |
274.8 |
CAQ |
NAL |
CAO |
HNAL |
240.0 |
179.9 |
CAO |
NAL |
CAQ |
HAQ |
18.7 |
34.9 |
CAM |
CAP |
CAO |
NAL |
358.1 |
0.0 |
CAI |
CAQ |
NAL |
CAJ |
245.4 |
240.2 |
NAL |
CAQ |
CAI |
HAI |
46.6 |
57.7 |
NAL |
CAQ |
CAI |
HAIA |
286.6 |
297.5 |
CAI |
CAQ |
NAL |
HAQ |
123.1 |
120.1 |
NAL |
CAQ |
CAJ |
HAJ |
60.3 |
60.8 |
NAL |
CAQ |
CAJ |
HAJA |
300.3 |
300.9 |
CAJ |
CAQ |
NAL |
HAQ |
237.6 |
239.9 |
CAQ |
NAL |
CAO |
CAP |
180.8 |
174.5 |
CAO |
NAL |
CAQ |
HNAL |
120.0 |
180.1 |
OAA |
CAM |
CAP |
OAB |
181.3 |
180.0 |
CAE |
CAO |
CAP |
CAM |
180.9 |
180.0 |
CAF |
CAP |
CAM |
CAO |
177.3 |
180.0 |
CAM |
CAP |
CAF |
HAF |
357.9 |
0.1 |
NAL |
CAO |
CAP |
CAM |
358.1 |
0.0 |
CAE |
CAO |
CAP |
NAL |
182.9 |
180.0 |
CAP |
CAO |
CAE |
HAE |
179.2 |
180.0 |
CAF |
CAP |
CAO |
CAM |
182.8 |
180.0 |
CAO |
CAP |
CAF |
HAF |
175.2 |
180.1 |
CAP |
CAO |
NAL |
CAQ |
180.8 |
174.5 |
CAP |
CAO |
NAL |
HNAL |
300.9 |
354.6 |
CAE |
CAD |
HAD |
CAN |
180.0 |
180.3 |
HAD |
CAD |
CAE |
CAO |
179.1 |
179.7 |
HAD |
CAD |
CAE |
HAE |
359.1 |
359.7 |
HAD |
CAD |
CAN |
CAF |
179.6 |
180.3 |
HAE |
CAE |
CAD |
CAN |
179.2 |
180.0 |
CAD |
CAE |
HAE |
CAO |
180.0 |
180.1 |
HAE |
CAE |
CAD |
HAD |
359.1 |
359.7 |
HAE |
CAE |
CAO |
NAL |
1.9 |
0.0 |
HAE |
CAE |
CAO |
CAP |
179.2 |
180.0 |
CAN |
CAF |
HAF |
CAP |
180.0 |
180.1 |
HAF |
CAF |
CAP |
CAM |
357.9 |
0.1 |
HAF |
CAF |
CAP |
CAO |
175.2 |
180.1 |
CAH |
CAG |
HAG |
CAI |
236.7 |
240.2 |
HAG |
CAG |
CAH |
NAK |
172.6 |
179.1 |
CAH |
CAG |
HAG |
HAGA |
118.3 |
120.1 |
HAG |
CAG |
CAH |
HAH |
292.6 |
299.1 |
HAG |
CAG |
CAH |
HAHA |
52.6 |
59.1 |
HAG |
CAG |
CAI |
CAQ |
192.3 |
182.4 |
CAI |
CAG |
HAG |
HAGA |
241.6 |
239.9 |
HAG |
CAG |
CAI |
HAI |
312.3 |
302.3 |
HAG |
CAG |
CAI |
HAIA |
72.3 |
62.5 |
CAH |
CAG |
HAGA |
CAI |
123.3 |
119.8 |
HAGA |
CAG |
CAH |
NAK |
292.6 |
299.2 |
CAH |
CAG |
HAGA |
HAG |
241.7 |
239.9 |
HAGA |
CAG |
CAH |
HAH |
52.6 |
59.2 |
HAGA |
CAG |
CAH |
HAHA |
172.6 |
179.2 |
HAGA |
CAG |
CAI |
CAQ |
72.3 |
62.3 |
CAI |
CAG |
HAGA |
HAG |
118.4 |
120.1 |
HAGA |
CAG |
CAI |
HAI |
192.3 |
182.2 |
HAGA |
CAG |
CAI |
HAIA |
312.3 |
302.4 |
HAH |
CAH |
CAG |
CAI |
172.6 |
179.2 |
CAG |
CAH |
HAH |
NAK |
239.5 |
240.0 |
HAH |
CAH |
CAG |
HAG |
292.6 |
299.1 |
HAH |
CAH |
CAG |
HAGA |
52.6 |
59.2 |
CAG |
CAH |
HAH |
HAHA |
119.7 |
120.0 |
HAH |
CAH |
NAK |
CAJ |
180.1 |
178.3 |
NAK |
CAH |
HAH |
HAHA |
240.3 |
240.0 |
HAH |
CAH |
NAK |
HNAK |
300.1 |
302.3 |
HAHA |
CAH |
CAG |
CAI |
292.6 |
299.2 |
CAG |
CAH |
HAHA |
NAK |
120.5 |
120.0 |
HAHA |
CAH |
CAG |
HAG |
52.6 |
59.1 |
HAHA |
CAH |
CAG |
HAGA |
172.6 |
179.2 |
CAG |
CAH |
HAHA |
HAH |
240.2 |
240.0 |
HAHA |
CAH |
NAK |
CAJ |
60.1 |
58.3 |
NAK |
CAH |
HAHA |
HAH |
119.7 |
120.0 |
HAHA |
CAH |
NAK |
HNAK |
180.1 |
182.4 |
CAG |
CAI |
HAI |
CAQ |
237.6 |
240.4 |
HAI |
CAI |
CAG |
HAG |
312.3 |
302.3 |
HAI |
CAI |
CAG |
HAGA |
192.3 |
182.2 |
CAG |
CAI |
HAI |
HAIA |
118.8 |
120.2 |
HAI |
CAI |
CAQ |
CAJ |
289.0 |
297.7 |
HAI |
CAI |
CAQ |
NAL |
46.6 |
57.7 |
CAQ |
CAI |
HAI |
HAIA |
241.2 |
239.8 |
HAI |
CAI |
CAQ |
HAQ |
166.9 |
177.8 |
CAG |
CAI |
HAIA |
CAQ |
122.4 |
119.7 |
HAIA |
CAI |
CAG |
HAG |
72.3 |
62.5 |
HAIA |
CAI |
CAG |
HAGA |
312.3 |
302.4 |
CAG |
CAI |
HAIA |
HAI |
241.2 |
239.8 |
HAIA |
CAI |
CAQ |
CAJ |
169.0 |
177.6 |
HAIA |
CAI |
CAQ |
NAL |
286.6 |
297.5 |
CAQ |
CAI |
HAIA |
HAI |
118.8 |
120.1 |
HAIA |
CAI |
CAQ |
HAQ |
46.9 |
57.6 |
NAK |
CAJ |
HAJ |
CAQ |
235.5 |
239.9 |
NAK |
CAJ |
HAJ |
HAJA |
117.7 |
120.0 |
HAJ |
CAJ |
NAK |
HNAK |
69.9 |
57.7 |
HAJ |
CAJ |
CAQ |
NAL |
60.3 |
60.8 |
CAQ |
CAJ |
HAJ |
HAJA |
242.3 |
240.1 |
HAJ |
CAJ |
CAQ |
HAQ |
299.9 |
300.7 |
NAK |
CAJ |
HAJA |
CAQ |
124.5 |
120.1 |
NAK |
CAJ |
HAJA |
HAJ |
242.3 |
240.0 |
HAJA |
CAJ |
NAK |
HNAK |
189.8 |
177.6 |
HAJA |
CAJ |
CAQ |
NAL |
300.3 |
300.9 |
CAQ |
CAJ |
HAJA |
HAJ |
117.7 |
119.9 |
HAJA |
CAJ |
CAQ |
HAQ |
179.9 |
180.8 |
CAH |
NAK |
HNAK |
CAJ |
242.7 |
235.8 |
HNAK |
NAK |
CAH |
HAH |
300.1 |
302.3 |
HNAK |
NAK |
CAH |
HAHA |
180.1 |
182.4 |
HNAK |
NAK |
CAJ |
CAQ |
309.9 |
297.7 |
HNAK |
NAK |
CAJ |
HAJ |
69.9 |
57.7 |
HNAK |
NAK |
CAJ |
HAJA |
189.8 |
177.6 |
CAO |
NAL |
HNAL |
CAQ |
228.5 |
179.9 |
HNAL |
NAL |
CAO |
CAP |
300.9 |
354.6 |
HNAL |
NAL |
CAQ |
HAQ |
258.7 |
214.9 |
CAI |
CAQ |
HAQ |
CAJ |
118.3 |
119.8 |
CAI |
CAQ |
HAQ |
NAL |
239.6 |
239.9 |
HAQ |
CAQ |
CAI |
HAI |
166.9 |
177.8 |
HAQ |
CAQ |
CAI |
HAIA |
46.9 |
57.6 |
CAJ |
CAQ |
HAQ |
NAL |
121.3 |
120.1 |
HAQ |
CAQ |
CAJ |
HAJ |
299.9 |
300.7 |
HAQ |
CAQ |
CAJ |
HAJA |
179.9 |
180.8 |
HAQ |
CAQ |
NAL |
HNAL |
258.7 |
214.9 |