PDB Chemical Component AKD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AKD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OAA CAM 1.250 1.223
OAB CAM 1.229 1.224
BRAC CAN 1.867 1.891
CAD CAE 1.367 1.379
CAD CAN 1.363 1.388
CAE CAO 1.409 1.390
CAF CAN 1.411 1.377
CAF CAP 1.375 1.399
CAG CAH 1.548 1.531
CAG CAI 1.564 1.531
CAH NAK 1.478 1.469
CAI CAQ 1.550 1.532
CAJ NAK 1.484 1.468
CAJ CAQ 1.523 1.530
NAL CAO 1.370 1.388
NAL CAQ 1.508 1.465
CAM CAP 1.516 1.470
CAO CAP 1.414 1.404
CAD HAD 1.080 1.080
CAE HAE 1.080 1.080
CAF HAF 1.080 1.081
CAG HAG 1.100 1.090
CAG HAGA 1.100 1.089
CAH HAH 1.100 1.090
CAH HAHA 1.100 1.089
CAI HAI 1.100 1.090
CAI HAIA 1.100 1.090
CAJ HAJ 1.100 1.091
CAJ HAJA 1.100 1.090
NAK HNAK 1.000 1.009
NAL HNAL 1.000 0.971
CAQ HAQ 1.100 1.090

Bond Angles for AKD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OAA CAM OAB 122.8 120.0
OAA CAM CAP 123.6 120.1
OAB CAM CAP 113.6 120.0
BRAC CAN CAD 127.8 119.8
BRAC CAN CAF 111.3 119.8
CAE CAD CAN 121.5 120.4
CAD CAE CAO 119.2 120.1
CAE CAD HAD 119.3 119.8
CAD CAE HAE 120.4 119.9
CAD CAN CAF 120.8 120.3
CAN CAD HAD 119.3 119.8
CAE CAO NAL 117.6 120.1
CAE CAO CAP 119.4 119.7
CAO CAE HAE 120.4 120.0
CAN CAF CAP 118.6 120.0
CAN CAF HAF 120.7 120.0
CAF CAP CAM 118.6 120.2
CAF CAP CAO 120.3 119.5
CAP CAF HAF 120.7 120.0
CAH CAG CAI 113.5 109.3
CAG CAH NAK 110.1 109.5
CAH CAG HAG 108.2 109.5
CAH CAG HAGA 108.1 109.5
CAG CAH HAH 109.3 109.5
CAG CAH HAHA 109.2 109.5
CAG CAI CAQ 112.4 109.1
CAI CAG HAG 108.2 109.5
CAI CAG HAGA 108.2 109.5
CAG CAI HAI 108.5 109.5
CAG CAI HAIA 108.5 109.5
CAH NAK CAJ 106.1 111.2
NAK CAH HAH 109.2 109.5
NAK CAH HAHA 109.3 109.4
CAH NAK HNAK 110.6 111.0
CAI CAQ CAJ 105.2 109.3
CAI CAQ NAL 108.6 109.5
CAQ CAI HAI 108.5 109.5
CAQ CAI HAIA 108.5 109.5
CAI CAQ HAQ 112.9 109.5
NAK CAJ CAQ 115.0 109.6
NAK CAJ HAJ 107.7 109.5
NAK CAJ HAJA 107.7 109.5
CAJ NAK HNAK 110.6 111.0
CAJ CAQ NAL 109.9 109.5
CAQ CAJ HAJ 107.7 109.5
CAQ CAJ HAJA 107.7 109.4
CAJ CAQ HAQ 111.7 109.5
CAO NAL CAQ 123.4 120.0
NAL CAO CAP 123.0 120.2
CAO NAL HNAL 105.1 119.9
CAQ NAL HNAL 105.1 120.0
NAL CAQ HAQ 108.5 109.5
CAM CAP CAO 121.1 120.3
HAG CAG HAGA 110.8 109.5
HAH CAH HAHA 109.7 109.5
HAI CAI HAIA 110.4 109.6
HAJ CAJ HAJA 111.2 109.4

Torsion Angles for AKD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OAB CAM OAA CAP 181.5 180.0
CAF CAP CAM OAA 28.3 6.1
OAA CAM CAP CAO 211.0 186.1
OAA CAM OAB CAP 178.7 180.0
CAF CAP CAM OAB 207.0 186.1
OAB CAM CAP CAO 29.7 6.1
CAE CAD CAN BRAC 183.8 180.0
CAD CAN BRAC CAF 176.1 180.0
BRAC CAN CAD HAD 3.8 0.3
BRAC CAN CAF CAP 179.7 180.0
BRAC CAN CAF HAF 359.7 359.9
BRAC CAN CAD CAE 183.8 180.0
CAE CAD CAN CAF 359.6 359.9
CAN CAD CAE HAD 180.0 180.3
CAD CAE CAO NAL 181.9 180.0
CAD CAE CAO CAP 359.2 360.0
CAO CAE CAD HAE 180.0 180.1
BRAC CAN CAD CAF 184.2 180.0
CAN CAD CAE CAO 359.2 0.0
CAE CAD CAN HAD 180.0 179.7
CAN CAD CAE HAE 179.2 180.0
CAD CAN CAF CAP 3.3 0.0
CAD CAN CAF HAF 183.2 180.0
CAO CAE CAD CAN 359.2 0.0
CAO CAE CAD HAD 179.1 179.7
CAD CAE CAO HAE 180.0 179.9
CAF CAP CAO CAE 3.7 0.0
CAE CAO NAL CAQ 358.0 354.5
NAL CAO CAE CAP 182.7 180.0
CAE CAO NAL HNAL 118.1 174.6
CAM CAP CAO CAE 180.9 180.0
BRAC CAN CAF CAD 176.4 180.0
CAF CAN CAD HAD 179.6 180.3
CAN CAF CAP CAM 177.8 180.0
CAN CAF CAP CAO 355.1 360.0
CAP CAF CAN HAF 180.0 180.1
OAA CAM CAP CAF 28.3 6.1
OAB CAM CAP CAF 207.0 186.1
CAE CAO CAP CAF 3.7 0.0
CAN CAF CAP HAF 180.0 179.9
NAL CAO CAP CAF 180.8 180.0
CAM CAP CAF CAO 182.7 180.0
CAH CAG CAI CAQ 312.3 302.3
CAI CAG CAH HAG 240.0 240.1
CAI CAG CAH HAGA 120.0 120.0
CAH CAG CAI HAI 72.3 62.2
CAH CAG CAI HAIA 192.3 182.4
CAG CAH NAK CAJ 300.1 298.3
NAK CAH CAG HAH 240.0 240.0
NAK CAH CAG HAHA 120.0 120.0
CAG CAH NAK HNAK 60.1 62.4
HAG CAG CAH HAGA 240.0 239.9
HAH CAH CAG HAHA 240.0 240.0
CAI CAG CAH NAK 52.6 59.2
CAH CAG CAI HAG 120.0 119.9
CAH CAG CAI HAGA 240.0 240.0
CAI CAG CAH HAH 172.6 179.2
CAI CAG CAH HAHA 292.6 299.2
CAG CAI CAQ CAJ 49.0 57.6
CAG CAI CAQ NAL 166.6 177.6
CAQ CAI CAG HAI 240.0 240.1
CAQ CAI CAG HAIA 120.0 119.9
CAG CAI CAQ HAQ 286.9 297.7
HAG CAG CAI HAGA 120.0 120.1
HAI CAI CAG HAIA 240.0 239.8
NAK CAH CAG CAI 52.6 59.2
NAK CAH CAG HAG 172.6 179.1
NAK CAH CAG HAGA 292.6 299.2
CAG CAH NAK HAH 120.0 120.0
CAG CAH NAK HAHA 240.0 240.0
CAH NAK CAJ CAQ 69.9 61.7
CAH NAK CAJ HAJ 189.9 181.8
CAH NAK CAJ HAJA 309.8 301.7
CAJ NAK CAH HNAK 240.0 235.9
HAH CAH NAK HAHA 120.0 120.0
CAQ CAI CAG HAG 192.3 182.4
CAQ CAI CAG HAGA 72.3 62.3
CAG CAI CAQ HAI 120.0 119.9
CAG CAI CAQ HAIA 240.0 240.1
NAK CAJ CAQ CAI 297.1 300.8
CAJ CAQ CAI NAL 242.4 240.0
CAI CAQ CAJ HAJ 177.1 180.8
CAI CAQ CAJ HAJA 57.1 60.8
CAJ CAQ CAI HAQ 122.1 119.9
CAO NAL CAQ CAI 141.8 155.0
CAI CAQ NAL HNAL 21.8 334.9
NAL CAQ CAI HAQ 239.7 239.9
HAI CAI CAQ HAIA 120.0 120.2
CAJ NAK CAH HAH 180.1 178.3
CAJ NAK CAH HAHA 60.1 58.3
CAH NAK CAJ HNAK 120.0 124.1
CAI CAQ CAJ NAK 297.1 300.8
NAK CAJ CAQ NAL 180.3 180.9
CAQ CAJ NAK HAJ 240.0 240.0
CAQ CAJ NAK HAJA 120.0 120.0
NAK CAJ CAQ HAQ 59.9 60.7
HAJ CAJ NAK HAJA 240.0 240.1
CAI CAQ CAJ NAL 116.7 119.9
CAJ CAQ CAI HAI 289.0 297.7
CAJ CAQ CAI HAIA 169.0 177.6
CAI CAQ CAJ HAQ 237.2 240.1
NAK CAJ CAQ HAJ 120.0 120.1
NAK CAJ CAQ HAJA 240.0 240.0
CAQ CAJ NAK HNAK 309.9 297.7
CAO NAL CAQ CAJ 256.4 274.8
CAJ CAQ NAL HNAL 136.4 94.7
NAL CAQ CAJ HAQ 120.4 120.1
HAJ CAJ CAQ HAJA 120.0 119.9
CAE CAO NAL CAP 177.2 180.0
NAL CAO CAE HAE 1.9 0.0
CAF CAP CAO NAL 180.8 180.0
CAI CAQ NAL CAO 141.8 155.0
CAJ CAQ NAL CAO 256.4 274.8
CAQ NAL CAO HNAL 240.0 179.9
CAO NAL CAQ HAQ 18.7 34.9
CAM CAP CAO NAL 358.1 0.0
CAI CAQ NAL CAJ 245.4 240.2
NAL CAQ CAI HAI 46.6 57.7
NAL CAQ CAI HAIA 286.6 297.5
CAI CAQ NAL HAQ 123.1 120.1
NAL CAQ CAJ HAJ 60.3 60.8
NAL CAQ CAJ HAJA 300.3 300.9
CAJ CAQ NAL HAQ 237.6 239.9
CAQ NAL CAO CAP 180.8 174.5
CAO NAL CAQ HNAL 120.0 180.1
OAA CAM CAP OAB 181.3 180.0
CAE CAO CAP CAM 180.9 180.0
CAF CAP CAM CAO 177.3 180.0
CAM CAP CAF HAF 357.9 0.1
NAL CAO CAP CAM 358.1 0.0
CAE CAO CAP NAL 182.9 180.0
CAP CAO CAE HAE 179.2 180.0
CAF CAP CAO CAM 182.8 180.0
CAO CAP CAF HAF 175.2 180.1
CAP CAO NAL CAQ 180.8 174.5
CAP CAO NAL HNAL 300.9 354.6
CAE CAD HAD CAN 180.0 180.3
HAD CAD CAE CAO 179.1 179.7
HAD CAD CAE HAE 359.1 359.7
HAD CAD CAN CAF 179.6 180.3
HAE CAE CAD CAN 179.2 180.0
CAD CAE HAE CAO 180.0 180.1
HAE CAE CAD HAD 359.1 359.7
HAE CAE CAO NAL 1.9 0.0
HAE CAE CAO CAP 179.2 180.0
CAN CAF HAF CAP 180.0 180.1
HAF CAF CAP CAM 357.9 0.1
HAF CAF CAP CAO 175.2 180.1
CAH CAG HAG CAI 236.7 240.2
HAG CAG CAH NAK 172.6 179.1
CAH CAG HAG HAGA 118.3 120.1
HAG CAG CAH HAH 292.6 299.1
HAG CAG CAH HAHA 52.6 59.1
HAG CAG CAI CAQ 192.3 182.4
CAI CAG HAG HAGA 241.6 239.9
HAG CAG CAI HAI 312.3 302.3
HAG CAG CAI HAIA 72.3 62.5
CAH CAG HAGA CAI 123.3 119.8
HAGA CAG CAH NAK 292.6 299.2
CAH CAG HAGA HAG 241.7 239.9
HAGA CAG CAH HAH 52.6 59.2
HAGA CAG CAH HAHA 172.6 179.2
HAGA CAG CAI CAQ 72.3 62.3
CAI CAG HAGA HAG 118.4 120.1
HAGA CAG CAI HAI 192.3 182.2
HAGA CAG CAI HAIA 312.3 302.4
HAH CAH CAG CAI 172.6 179.2
CAG CAH HAH NAK 239.5 240.0
HAH CAH CAG HAG 292.6 299.1
HAH CAH CAG HAGA 52.6 59.2
CAG CAH HAH HAHA 119.7 120.0
HAH CAH NAK CAJ 180.1 178.3
NAK CAH HAH HAHA 240.3 240.0
HAH CAH NAK HNAK 300.1 302.3
HAHA CAH CAG CAI 292.6 299.2
CAG CAH HAHA NAK 120.5 120.0
HAHA CAH CAG HAG 52.6 59.1
HAHA CAH CAG HAGA 172.6 179.2
CAG CAH HAHA HAH 240.2 240.0
HAHA CAH NAK CAJ 60.1 58.3
NAK CAH HAHA HAH 119.7 120.0
HAHA CAH NAK HNAK 180.1 182.4
CAG CAI HAI CAQ 237.6 240.4
HAI CAI CAG HAG 312.3 302.3
HAI CAI CAG HAGA 192.3 182.2
CAG CAI HAI HAIA 118.8 120.2
HAI CAI CAQ CAJ 289.0 297.7
HAI CAI CAQ NAL 46.6 57.7
CAQ CAI HAI HAIA 241.2 239.8
HAI CAI CAQ HAQ 166.9 177.8
CAG CAI HAIA CAQ 122.4 119.7
HAIA CAI CAG HAG 72.3 62.5
HAIA CAI CAG HAGA 312.3 302.4
CAG CAI HAIA HAI 241.2 239.8
HAIA CAI CAQ CAJ 169.0 177.6
HAIA CAI CAQ NAL 286.6 297.5
CAQ CAI HAIA HAI 118.8 120.1
HAIA CAI CAQ HAQ 46.9 57.6
NAK CAJ HAJ CAQ 235.5 239.9
NAK CAJ HAJ HAJA 117.7 120.0
HAJ CAJ NAK HNAK 69.9 57.7
HAJ CAJ CAQ NAL 60.3 60.8
CAQ CAJ HAJ HAJA 242.3 240.1
HAJ CAJ CAQ HAQ 299.9 300.7
NAK CAJ HAJA CAQ 124.5 120.1
NAK CAJ HAJA HAJ 242.3 240.0
HAJA CAJ NAK HNAK 189.8 177.6
HAJA CAJ CAQ NAL 300.3 300.9
CAQ CAJ HAJA HAJ 117.7 119.9
HAJA CAJ CAQ HAQ 179.9 180.8
CAH NAK HNAK CAJ 242.7 235.8
HNAK NAK CAH HAH 300.1 302.3
HNAK NAK CAH HAHA 180.1 182.4
HNAK NAK CAJ CAQ 309.9 297.7
HNAK NAK CAJ HAJ 69.9 57.7
HNAK NAK CAJ HAJA 189.8 177.6
CAO NAL HNAL CAQ 228.5 179.9
HNAL NAL CAO CAP 300.9 354.6
HNAL NAL CAQ HAQ 258.7 214.9
CAI CAQ HAQ CAJ 118.3 119.8
CAI CAQ HAQ NAL 239.6 239.9
HAQ CAQ CAI HAI 166.9 177.8
HAQ CAQ CAI HAIA 46.9 57.6
CAJ CAQ HAQ NAL 121.3 120.1
HAQ CAQ CAJ HAJ 299.9 300.7
HAQ CAQ CAJ HAJA 179.9 180.8
HAQ CAQ NAL HNAL 258.7 214.9