PDB Chemical Component AJE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AJE
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.436 |
1.469 |
CA |
CG |
1.519 |
1.540 |
CA |
CB |
1.495 |
1.546 |
CG |
NG |
1.452 |
1.475 |
NG |
CD |
1.467 |
1.481 |
NG |
C1 |
1.350 |
1.348 |
CD |
CB |
1.540 |
1.550 |
CB |
C |
1.536 |
1.507 |
C |
O |
1.226 |
1.209 |
C |
OXT |
1.332 |
1.342 |
C1 |
O1 |
1.228 |
1.213 |
C1 |
C2 |
1.518 |
1.507 |
C2 |
C3 |
1.539 |
1.529 |
C3 |
C4 |
1.526 |
1.507 |
C4 |
O41 |
1.254 |
1.343 |
C4 |
O42 |
1.251 |
1.208 |
N |
H |
1.000 |
1.009 |
N |
H2 |
1.000 |
1.009 |
CA |
HA |
1.100 |
1.090 |
CG |
HG1C |
1.100 |
1.090 |
CG |
HG2C |
1.100 |
1.090 |
CB |
HB |
1.100 |
1.090 |
CD |
HD1C |
1.100 |
1.090 |
CD |
HD2C |
1.100 |
1.089 |
OXT |
HXT |
0.950 |
0.967 |
C2 |
H21C |
1.100 |
1.090 |
C2 |
H22C |
1.100 |
1.091 |
C3 |
H31C |
1.100 |
1.090 |
C3 |
H32C |
1.100 |
1.091 |
O41 |
H41 |
0.950 |
0.967 |
Bond Angles for AJE
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
CA |
CG |
113.9 |
110.4 |
N |
CA |
CB |
109.7 |
110.3 |
CA |
N |
H |
109.5 |
111.0 |
CA |
N |
H2 |
109.5 |
111.0 |
N |
CA |
HA |
108.6 |
110.3 |
CG |
CA |
CB |
109.2 |
105.0 |
CA |
CG |
NG |
104.0 |
107.1 |
CG |
CA |
HA |
107.5 |
110.3 |
CA |
CG |
HG1C |
110.8 |
109.9 |
CA |
CG |
HG2C |
110.8 |
109.9 |
CA |
CB |
CD |
104.3 |
102.9 |
CA |
CB |
C |
107.2 |
110.8 |
CB |
CA |
HA |
107.8 |
110.4 |
CA |
CB |
HB |
109.5 |
110.8 |
CG |
NG |
CD |
113.0 |
105.9 |
CG |
NG |
C1 |
119.0 |
127.1 |
NG |
CG |
HG1C |
110.8 |
109.9 |
NG |
CG |
HG2C |
110.8 |
109.9 |
CD |
NG |
C1 |
128.0 |
127.0 |
NG |
CD |
CB |
105.2 |
103.2 |
NG |
CD |
HD1C |
110.5 |
110.6 |
NG |
CD |
HD2C |
110.5 |
110.7 |
NG |
C1 |
O1 |
120.8 |
120.0 |
NG |
C1 |
C2 |
120.5 |
120.0 |
CD |
CB |
C |
117.7 |
110.7 |
CD |
CB |
HB |
108.9 |
110.7 |
CB |
CD |
HD1C |
110.5 |
110.6 |
CB |
CD |
HD2C |
110.5 |
110.7 |
CB |
C |
O |
121.0 |
119.9 |
CB |
C |
OXT |
106.6 |
120.0 |
C |
CB |
HB |
108.9 |
110.7 |
O |
C |
OXT |
122.8 |
120.0 |
C |
OXT |
HXT |
109.5 |
117.0 |
O1 |
C1 |
C2 |
118.7 |
120.0 |
C1 |
C2 |
C3 |
113.8 |
109.5 |
C1 |
C2 |
H21C |
108.4 |
109.5 |
C1 |
C2 |
H22C |
108.4 |
109.4 |
C2 |
C3 |
C4 |
117.3 |
109.5 |
C3 |
C2 |
H21C |
108.3 |
109.5 |
C3 |
C2 |
H22C |
108.3 |
109.5 |
C2 |
C3 |
H31C |
107.5 |
109.5 |
C2 |
C3 |
H32C |
107.5 |
109.5 |
C3 |
C4 |
O41 |
118.3 |
120.0 |
C3 |
C4 |
O42 |
120.6 |
120.0 |
C4 |
C3 |
H31C |
107.5 |
109.5 |
C4 |
C3 |
H32C |
107.5 |
109.4 |
O41 |
C4 |
O42 |
121.1 |
120.0 |
C4 |
O41 |
H41 |
109.5 |
117.0 |
H |
N |
H2 |
109.4 |
111.1 |
HG1C |
CG |
HG2C |
109.5 |
110.1 |
HD1C |
CD |
HD2C |
109.5 |
110.7 |
H21C |
C2 |
H22C |
109.5 |
109.4 |
H31C |
C3 |
H32C |
109.5 |
109.4 |
Torsion Angles for AJE
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CG |
CA |
N |
CB |
237.2 |
244.4 |
N |
CA |
CG |
NG |
137.8 |
117.6 |
CG |
CA |
N |
HA |
119.7 |
122.1 |
N |
CA |
CG |
HG1C |
256.9 |
236.9 |
N |
CA |
CG |
HG2C |
18.7 |
358.3 |
N |
CA |
CB |
CD |
213.7 |
219.3 |
N |
CA |
CB |
C |
88.1 |
100.9 |
CB |
CA |
N |
HA |
242.5 |
237.8 |
N |
CA |
CB |
HB |
330.1 |
337.6 |
H |
N |
CA |
H2 |
240.0 |
236.0 |
N |
CA |
CG |
CB |
123.1 |
118.9 |
CG |
CA |
N |
H |
180.0 |
61.4 |
CG |
CA |
N |
H2 |
300.0 |
185.4 |
N |
CA |
CG |
HA |
239.7 |
237.9 |
CG |
CA |
CB |
CD |
339.2 |
338.2 |
CG |
CA |
CB |
C |
213.7 |
219.8 |
CB |
CA |
CG |
HA |
116.6 |
119.0 |
CG |
CA |
CB |
HB |
95.6 |
96.5 |
CA |
CG |
NG |
CD |
357.7 |
25.4 |
CA |
CG |
NG |
C1 |
178.0 |
205.4 |
NG |
CG |
CA |
HG1C |
240.9 |
240.7 |
NG |
CG |
CA |
HG2C |
119.1 |
119.3 |
HG1C |
CG |
CA |
HG2C |
238.2 |
238.7 |
N |
CA |
CB |
CG |
234.5 |
241.1 |
CB |
CA |
N |
H |
302.8 |
177.1 |
CB |
CA |
N |
H2 |
62.7 |
301.1 |
N |
CA |
CB |
HA |
118.0 |
122.2 |
CB |
CA |
CG |
NG |
14.8 |
358.7 |
CG |
CA |
CB |
HA |
243.6 |
241.1 |
CB |
CA |
CG |
HG1C |
133.9 |
118.0 |
CB |
CA |
CG |
HG2C |
255.6 |
239.4 |
NG |
CD |
CB |
CA |
18.6 |
37.3 |
CD |
CB |
CA |
C |
125.5 |
118.4 |
CD |
CB |
CA |
HB |
243.6 |
241.7 |
CA |
CB |
CD |
HD1C |
259.3 |
278.9 |
CA |
CB |
CD |
HD2C |
137.9 |
155.8 |
CA |
CB |
C |
O |
99.0 |
0.0 |
CA |
CB |
C |
OXT |
246.0 |
180.0 |
C |
CB |
CA |
HB |
118.0 |
123.3 |
NG |
CG |
CA |
CB |
14.8 |
358.7 |
NG |
CG |
CA |
HA |
258.1 |
239.7 |
CA |
CG |
NG |
HG1C |
119.2 |
119.4 |
CA |
CG |
NG |
HG2C |
240.9 |
240.7 |
CD |
NG |
CG |
C1 |
179.7 |
180.0 |
CG |
NG |
CD |
CB |
349.7 |
320.8 |
CG |
NG |
CD |
HD1C |
109.0 |
79.1 |
CG |
NG |
CD |
HD2C |
230.4 |
202.3 |
CG |
NG |
C1 |
O1 |
359.9 |
180.0 |
CG |
NG |
C1 |
C2 |
179.2 |
0.0 |
HG1C |
CG |
NG |
HG2C |
121.7 |
121.3 |
CA |
CB |
CD |
NG |
18.6 |
37.3 |
CG |
NG |
CD |
C1 |
180.3 |
180.0 |
CD |
NG |
CG |
HG1C |
238.5 |
266.1 |
CD |
NG |
CG |
HG2C |
116.8 |
144.8 |
CD |
NG |
C1 |
O1 |
180.3 |
360.0 |
CD |
NG |
C1 |
C2 |
359.6 |
180.0 |
NG |
CD |
CB |
C |
137.2 |
155.7 |
NG |
CD |
CB |
HB |
261.8 |
279.0 |
CB |
CD |
NG |
HD1C |
240.7 |
241.6 |
CB |
CD |
NG |
HD2C |
119.3 |
118.5 |
HD1C |
CD |
NG |
HD2C |
238.7 |
236.8 |
CG |
NG |
C1 |
CD |
179.6 |
180.0 |
C1 |
NG |
CG |
HG1C |
58.8 |
86.1 |
C1 |
NG |
CG |
HG2C |
297.1 |
324.8 |
C1 |
NG |
CD |
CB |
169.3 |
140.8 |
C1 |
NG |
CD |
HD1C |
288.7 |
259.1 |
C1 |
NG |
CD |
HD2C |
50.0 |
22.3 |
O1 |
C1 |
NG |
C2 |
180.7 |
180.0 |
NG |
C1 |
C2 |
C3 |
132.4 |
180.0 |
NG |
C1 |
C2 |
H21C |
253.0 |
300.0 |
NG |
C1 |
C2 |
H22C |
11.8 |
60.0 |
CA |
CB |
CD |
C |
241.4 |
241.6 |
CD |
CB |
CA |
HA |
95.6 |
97.1 |
CA |
CB |
CD |
HB |
116.8 |
118.4 |
CB |
CD |
NG |
C1 |
169.3 |
140.8 |
NG |
CD |
CB |
HD1C |
119.3 |
118.4 |
NG |
CD |
CB |
HD2C |
240.7 |
241.5 |
CD |
CB |
C |
O |
342.0 |
246.6 |
CD |
CB |
C |
OXT |
128.9 |
66.5 |
C |
CB |
CD |
HB |
235.4 |
236.8 |
HD1C |
CD |
CB |
HD2C |
121.4 |
123.1 |
CA |
CB |
C |
CD |
117.1 |
113.5 |
C |
CB |
CA |
HA |
330.1 |
338.7 |
CA |
CB |
C |
HB |
241.6 |
236.7 |
CD |
CB |
C |
HB |
124.6 |
123.2 |
C |
CB |
CD |
HD1C |
17.9 |
37.3 |
C |
CB |
CD |
HD2C |
256.5 |
274.2 |
O |
C |
CB |
OXT |
213.0 |
180.0 |
CB |
C |
OXT |
HXT |
213.8 |
180.0 |
CB |
C |
O |
OXT |
141.6 |
180.0 |
O |
C |
CB |
HB |
217.4 |
123.4 |
O |
C |
OXT |
HXT |
0.0 |
359.9 |
CB |
C |
OXT |
O |
213.8 |
180.0 |
OXT |
C |
CB |
HB |
4.4 |
303.3 |
NG |
C1 |
O1 |
C2 |
179.3 |
180.0 |
O1 |
C1 |
C2 |
C3 |
311.7 |
360.0 |
O1 |
C1 |
C2 |
H21C |
72.4 |
120.1 |
O1 |
C1 |
C2 |
H22C |
191.1 |
240.0 |
NG |
C1 |
C2 |
O1 |
180.7 |
180.0 |
C1 |
C2 |
C3 |
C4 |
65.7 |
180.0 |
C3 |
C2 |
C1 |
H21C |
239.4 |
239.9 |
C3 |
C2 |
C1 |
H22C |
120.6 |
120.0 |
C1 |
C2 |
C3 |
H31C |
186.8 |
300.0 |
C1 |
C2 |
C3 |
H32C |
304.6 |
60.0 |
H21C |
C2 |
C1 |
H22C |
241.2 |
240.1 |
C1 |
C2 |
C3 |
H21C |
120.6 |
120.1 |
C1 |
C2 |
C3 |
H22C |
239.4 |
240.0 |
C2 |
C3 |
C4 |
O41 |
217.1 |
180.0 |
C2 |
C3 |
C4 |
O42 |
38.0 |
360.0 |
C4 |
C3 |
C2 |
H31C |
238.9 |
240.0 |
C4 |
C3 |
C2 |
H32C |
121.1 |
120.0 |
H21C |
C2 |
C3 |
H22C |
118.7 |
120.0 |
H31C |
C3 |
C2 |
H32C |
242.3 |
240.0 |
C4 |
C3 |
C2 |
H21C |
305.0 |
59.9 |
C4 |
C3 |
C2 |
H22C |
186.3 |
300.0 |
C2 |
C3 |
C4 |
H31C |
121.2 |
120.1 |
C2 |
C3 |
C4 |
H32C |
238.9 |
240.0 |
O41 |
C4 |
C3 |
O42 |
179.1 |
180.0 |
C3 |
C4 |
O41 |
H41 |
180.9 |
180.0 |
H31C |
C3 |
C4 |
H32C |
117.7 |
120.0 |
C3 |
C4 |
O41 |
O42 |
180.9 |
180.0 |
O41 |
C4 |
C3 |
H31C |
95.9 |
60.0 |
O41 |
C4 |
C3 |
H32C |
338.2 |
300.0 |
C3 |
C4 |
O42 |
O41 |
179.0 |
180.0 |
O42 |
C4 |
C3 |
H31C |
276.9 |
239.9 |
O42 |
C4 |
C3 |
H32C |
159.1 |
120.0 |
O42 |
C4 |
O41 |
H41 |
360.0 |
0.0 |
H |
N |
CA |
CG |
180.0 |
61.4 |
H |
N |
CA |
CB |
302.8 |
177.1 |
CA |
N |
H |
H2 |
120.0 |
124.0 |
H |
N |
CA |
HA |
60.3 |
299.3 |
H2 |
N |
CA |
CG |
300.0 |
185.4 |
H2 |
N |
CA |
CB |
62.7 |
301.1 |
CA |
N |
H2 |
H |
240.0 |
236.1 |
H2 |
N |
CA |
HA |
180.3 |
63.3 |
N |
CA |
HA |
CG |
123.7 |
122.2 |
N |
CA |
HA |
CB |
241.2 |
237.8 |
HA |
CA |
N |
H |
60.3 |
299.3 |
HA |
CA |
N |
H2 |
180.3 |
63.3 |
CG |
CA |
HA |
CB |
117.5 |
115.7 |
HA |
CA |
CG |
NG |
258.1 |
239.7 |
HA |
CA |
CG |
HG1C |
17.3 |
359.0 |
HA |
CA |
CG |
HG2C |
139.0 |
120.4 |
HA |
CA |
CB |
CD |
95.6 |
97.1 |
HA |
CA |
CB |
C |
330.1 |
338.7 |
HA |
CA |
CB |
HB |
212.1 |
215.4 |
HG1C |
CG |
CA |
CB |
133.9 |
118.0 |
CA |
CG |
HG1C |
NG |
245.1 |
242.4 |
HG1C |
CG |
CA |
HA |
17.3 |
359.0 |
CA |
CG |
HG1C |
HG2C |
122.5 |
121.2 |
HG1C |
CG |
NG |
CD |
238.5 |
266.1 |
HG1C |
CG |
NG |
C1 |
58.8 |
86.1 |
NG |
CG |
HG1C |
HG2C |
237.5 |
238.8 |
HG2C |
CG |
CA |
CB |
255.6 |
239.4 |
CA |
CG |
HG2C |
NG |
114.9 |
117.6 |
HG2C |
CG |
CA |
HA |
139.0 |
120.4 |
CA |
CG |
HG2C |
HG1C |
237.4 |
238.8 |
HG2C |
CG |
NG |
CD |
116.8 |
144.8 |
HG2C |
CG |
NG |
C1 |
297.1 |
324.8 |
NG |
CG |
HG2C |
HG1C |
122.5 |
121.2 |
CA |
CB |
HB |
CD |
246.5 |
246.6 |
CA |
CB |
HB |
C |
116.9 |
123.3 |
HB |
CB |
CA |
HA |
212.1 |
215.4 |
CD |
CB |
HB |
C |
230.4 |
236.8 |
HB |
CB |
CD |
HD1C |
142.5 |
160.6 |
HB |
CB |
CD |
HD2C |
21.1 |
37.4 |
HB |
CB |
C |
O |
217.4 |
123.4 |
HB |
CB |
C |
OXT |
4.4 |
303.3 |
HD1C |
CD |
NG |
C1 |
288.7 |
259.1 |
NG |
CD |
HD1C |
CB |
243.9 |
246.2 |
NG |
CD |
HD1C |
HD2C |
121.9 |
123.2 |
HD1C |
CD |
CB |
C |
17.9 |
37.3 |
HD1C |
CD |
CB |
HB |
142.5 |
160.6 |
CB |
CD |
HD1C |
HD2C |
238.0 |
236.9 |
HD2C |
CD |
NG |
C1 |
50.0 |
22.3 |
NG |
CD |
HD2C |
CB |
116.1 |
113.8 |
NG |
CD |
HD2C |
HD1C |
238.0 |
236.9 |
HD2C |
CD |
CB |
C |
256.5 |
274.2 |
HD2C |
CD |
CB |
HB |
21.1 |
37.4 |
CB |
CD |
HD2C |
HD1C |
122.0 |
123.0 |
C1 |
C2 |
H21C |
C3 |
236.0 |
239.9 |
C1 |
C2 |
H21C |
H22C |
118.1 |
119.9 |
H21C |
C2 |
C3 |
C4 |
305.0 |
59.9 |
C3 |
C2 |
H21C |
H22C |
242.0 |
240.0 |
H21C |
C2 |
C3 |
H31C |
66.2 |
180.0 |
H21C |
C2 |
C3 |
H32C |
183.9 |
300.0 |
C1 |
C2 |
H22C |
C3 |
124.0 |
120.0 |
C1 |
C2 |
H22C |
H21C |
241.9 |
240.0 |
H22C |
C2 |
C3 |
C4 |
186.3 |
300.0 |
C3 |
C2 |
H22C |
H21C |
118.0 |
120.0 |
H22C |
C2 |
C3 |
H31C |
307.5 |
60.0 |
H22C |
C2 |
C3 |
H32C |
65.2 |
180.0 |
C2 |
C3 |
H31C |
C4 |
232.9 |
239.9 |
H31C |
C3 |
C2 |
H21C |
66.2 |
180.0 |
H31C |
C3 |
C2 |
H22C |
307.5 |
60.0 |
C2 |
C3 |
H31C |
H32C |
116.4 |
120.0 |
H31C |
C3 |
C4 |
O41 |
95.9 |
60.0 |
H31C |
C3 |
C4 |
O42 |
276.9 |
239.9 |
C4 |
C3 |
H31C |
H32C |
243.5 |
240.1 |
C2 |
C3 |
H32C |
C4 |
127.1 |
120.0 |
H32C |
C3 |
C2 |
H21C |
183.9 |
300.0 |
H32C |
C3 |
C2 |
H22C |
65.2 |
180.0 |
C2 |
C3 |
H32C |
H31C |
243.6 |
240.0 |
H32C |
C3 |
C4 |
O41 |
338.2 |
300.0 |
H32C |
C3 |
C4 |
O42 |
159.1 |
120.0 |
C4 |
C3 |
H32C |
H31C |
116.5 |
120.0 |
H41 |
O41 |
C4 |
O42 |
360.0 |
0.0 |