PDB Chemical Component AHX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AHX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N10 CA 1.437 1.469
N10 HN11 1.020 1.009
N10 HN12 1.020 1.008
CA CB 1.493 1.530
CA C9 1.499 1.506
CA HA 1.114 1.090
CB OG 1.435 1.429
CB HB1 1.115 1.090
CB HB2 1.114 1.089
OG HOG 0.949 0.966
C9 O9 1.240 1.212
C9 N8 1.306 1.347
N8 O3A 1.377 1.416
N8 HN8 1.019 0.969
PA O1A 1.475 1.480
PA O2A 1.488 1.610
PA O3A 1.567 1.609
PA O5' 1.606 1.609
O2A HOA2 0.949 0.966
O5' C5' 1.438 1.428
C5' C4' 1.519 1.529
C5' H5'1 1.114 1.091
C5' H5'2 1.115 1.090
C4' O4' 1.444 1.437
C4' C3' 1.512 1.540
C4' H4' 1.114 1.090
O4' C1' 1.437 1.444
C3' O3' 1.441 1.429
C3' C2' 1.503 1.552
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.404 1.429
C2' C1' 1.514 1.550
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.968
C1' N9 1.462 1.464
C1' H1' 1.115 1.090
N9 C8 1.387 1.363
N9 C4 1.390 1.372
C8 N7 1.314 1.302
C8 H8 1.102 1.080
N7 C5 1.403 1.355
C5 C6 1.403 1.405
C5 C4 1.377 1.404
C6 N6 1.328 1.385
C6 N1 1.330 1.328
N6 HN61 1.021 0.970
N6 HN62 1.019 0.970
N1 C2 1.330 1.320
C2 N3 1.320 1.316
C2 H2 1.103 1.080
N3 C4 1.368 1.329

Bond Angles for AHX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N10 HN11 109.4 106.7
CA N10 HN12 112.3 106.7
N10 CA CB 109.4 109.5
N10 CA C9 98.2 109.5
N10 CA HA 117.0 109.4
HN11 N10 HN12 112.2 106.7
CB CA C9 110.9 109.5
CB CA HA 105.6 109.4
CA CB OG 105.8 109.5
CA CB HB1 113.6 109.4
CA CB HB2 113.6 109.4
C9 CA HA 115.7 109.5
CA C9 O9 119.8 120.0
CA C9 N8 117.1 120.0
OG CB HB1 113.6 109.5
OG CB HB2 113.6 109.6
CB OG HOG 105.8 106.7
HB1 CB HB2 97.0 109.4
O9 C9 N8 123.0 120.0
C9 N8 O3A 114.9 120.0
C9 N8 HN8 120.2 120.0
O3A N8 HN8 124.9 120.0
N8 O3A PA 113.3 106.9
O1A PA O2A 119.1 109.5
O1A PA O3A 105.1 109.5
O1A PA O5' 110.7 109.4
O2A PA O3A 108.7 109.4
O2A PA O5' 105.6 109.5
PA O2A HOA2 119.1 106.8
O3A PA O5' 107.2 109.5
PA O5' C5' 121.0 106.9
O5' C5' C4' 115.2 109.5
O5' C5' H5'1 110.1 109.4
O5' C5' H5'2 110.1 109.5
C4' C5' H5'1 110.1 109.5
C4' C5' H5'2 110.1 109.5
C5' C4' O4' 115.2 109.9
C5' C4' C3' 110.2 109.9
C5' C4' H4' 104.8 109.8
H5'1 C5' H5'2 100.2 109.4
O4' C4' C3' 108.7 107.4
O4' C4' H4' 106.3 109.9
C4' O4' C1' 105.1 107.0
C3' C4' H4' 111.7 109.9
C4' C3' O3' 111.3 110.8
C4' C3' C2' 101.3 104.1
C4' C3' H3' 114.4 110.5
O4' C1' C2' 109.2 103.5
O4' C1' N9 110.6 110.7
O4' C1' H1' 109.5 110.6
O3' C3' C2' 111.9 110.5
O3' C3' H3' 104.4 110.4
C3' O3' HO3' 111.2 106.9
C2' C3' H3' 113.8 110.5
C3' C2' O2' 109.2 110.9
C3' C2' C1' 100.8 102.1
C3' C2' H2' 114.1 111.0
O2' C2' C1' 106.3 110.9
O2' C2' H2' 109.2 110.8
C2' O2' HO2' 109.1 106.8
C1' C2' H2' 116.6 110.9
C2' C1' N9 111.0 110.7
C2' C1' H1' 109.0 110.6
N9 C1' H1' 107.5 110.6
C1' N9 C8 129.7 126.3
C1' N9 C4 123.2 126.3
C8 N9 C4 106.0 107.4
N9 C8 N7 112.8 109.9
N9 C8 H8 126.0 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 126.7 135.0
N7 C8 H8 121.3 125.0
C8 N7 C5 104.7 109.5
N7 C5 C6 132.6 134.7
N7 C5 C4 110.4 107.1
C6 C5 C4 116.7 118.2
C5 C6 N6 123.2 120.8
C5 C6 N1 116.8 118.4
C5 C4 N3 127.4 119.0
N6 C6 N1 120.0 120.8
C6 N6 HN61 123.2 119.9
C6 N6 HN62 107.4 120.0
C6 N1 C2 120.2 121.2
HN61 N6 HN62 107.3 120.0
N1 C2 N3 129.5 122.4
N1 C2 H2 115.7 118.8
N3 C2 H2 114.8 118.8
C2 N3 C4 108.7 120.7

Torsion Angles for AHX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N10 CA HN12 125.3 113.8
CB CA N10 C9 244.4 239.9
CB CA N10 HA 120.0 119.9
N10 CA CB OG 51.2 300.1
N10 CA CB HB1 176.5 60.1
N10 CA CB HB2 286.0 180.0
C9 CA N10 HA 235.6 240.0
N10 CA C9 O9 334.9 330.0
N10 CA C9 N8 150.9 150.0
CA N10 HN11 HN12 234.7 246.2
HN11 N10 CA CB 180.0 53.7
HN11 N10 CA C9 295.7 173.8
HN11 N10 CA HA 60.0 293.8
CA N10 HN12 HN11 123.7 113.8
HN12 N10 CA CB 54.7 300.0
HN12 N10 CA C9 170.4 60.1
HN12 N10 CA HA 294.7 180.0
CB CA N10 HN11 180.0 53.7
CB CA N10 HN12 54.7 300.0
N10 CA CB C9 107.2 120.1
N10 CA CB HA 233.2 240.1
C9 CA CB HA 126.0 120.0
CB CA C9 O9 89.3 90.0
CB CA C9 N8 265.4 270.0
OG CB CA HB1 234.8 240.0
OG CB CA HB2 125.2 120.1
CA CB OG HOG 180.0 179.9
HB1 CB CA HB2 250.4 240.1
C9 CA N10 HN11 295.7 173.8
C9 CA N10 HN12 170.4 60.1
N10 CA C9 CB 245.6 239.9
N10 CA C9 HA 125.3 119.9
CB CA C9 HA 239.8 240.0
C9 CA CB OG 304.0 180.0
C9 CA CB HB1 69.3 300.0
C9 CA CB HB2 178.8 59.9
O9 C9 CA N8 183.9 180.0
CA C9 N8 O3A 180.6 180.0
CA C9 N8 HN8 0.6 360.0
HA CA N10 HN11 60.0 293.8
HA CA N10 HN12 294.7 180.0
N10 CA HA CB 122.0 119.9
N10 CA HA C9 245.0 240.0
CB CA HA C9 123.1 120.1
HA CA CB OG 178.0 60.0
HA CA CB HB1 303.2 180.0
HA CA CB HB2 52.8 299.9
HA CA C9 O9 209.6 210.0
HA CA C9 N8 25.6 30.1
OG CB CA C9 304.0 180.0
OG CB CA HA 178.0 60.0
CA CB OG HB1 125.2 119.9
CA CB OG HB2 234.8 240.0
HB1 CB OG HB2 109.6 120.0
HB1 CB CA C9 69.3 300.0
HB1 CB CA HA 303.2 180.0
CA CB HB1 OG 239.1 240.0
CA CB HB1 HB2 119.5 119.9
OG CB HB1 HB2 240.5 239.9
HB1 CB OG HOG 54.7 60.0
HB2 CB CA C9 178.8 59.9
HB2 CB CA HA 52.8 299.9
CA CB HB2 OG 120.9 120.1
CA CB HB2 HB1 240.5 240.1
OG CB HB2 HB1 119.5 120.1
HB2 CB OG HOG 305.2 300.0
HOG OG CB HB1 54.7 60.0
HOG OG CB HB2 305.2 300.0
O9 C9 CA HA 209.6 210.0
CA C9 O9 N8 175.8 180.0
O9 C9 N8 O3A 356.6 360.0
O9 C9 N8 HN8 176.6 180.0
N8 C9 CA HA 25.6 30.1
CA C9 N8 O9 184.1 180.0
O3A N8 C9 HN8 180.0 180.0
C9 N8 O3A PA 247.8 180.0
C9 N8 O3A HN8 180.0 180.0
O1A PA O3A N8 209.1 300.0
O2A PA O3A N8 337.7 60.0
N8 O3A PA O5' 91.3 180.0
C9 N8 HN8 O3A 180.0 180.0
HN8 N8 O3A PA 67.8 360.0
N8 O3A PA O1A 209.1 300.0
O2A PA O1A O3A 238.0 240.0
O2A PA O1A O5' 122.6 120.0
O1A PA O2A HOA2 180.0 180.0
O3A PA O1A O5' 244.6 239.9
O1A PA O5' C5' 152.0 60.0
N8 O3A PA O2A 337.7 60.0
O1A PA O2A O3A 120.2 120.0
O1A PA O2A O5' 234.9 240.0
O3A PA O2A O5' 114.7 120.1
O2A PA O5' C5' 21.8 300.0
PA O3A N8 HN8 67.8 360.0
O1A PA O3A O2A 231.4 240.0
O1A PA O3A O5' 117.8 120.0
O2A PA O3A O5' 246.3 240.0
O3A PA O2A HOA2 59.9 60.1
O3A PA O5' C5' 266.0 180.0
O1A PA O5' O2A 130.2 120.0
O1A PA O5' O3A 246.0 240.0
O2A PA O5' O3A 115.7 120.0
O5' PA O2A HOA2 305.2 300.0
PA O5' C5' C4' 214.7 180.0
PA O5' C5' H5'1 340.0 300.0
PA O5' C5' H5'2 89.5 59.9
HOA2 O2A PA O3A 59.9 60.1
HOA2 O2A PA O5' 305.2 300.0
C4' C5' O5' H5'1 234.7 239.9
C4' C5' O5' H5'2 125.2 120.0
O5' C5' C4' O4' 303.8 61.7
O5' C5' C4' C3' 67.2 179.7
O5' C5' C4' H4' 187.4 300.7
H5'1 C5' O5' H5'2 250.5 240.1
O5' C5' C4' H5'1 125.3 120.0
O5' C5' C4' H5'2 234.8 240.0
H5'1 C5' C4' H5'2 109.5 119.9
O4' C4' C5' C3' 236.6 242.0
O4' C4' C5' H4' 116.3 121.0
C5' C4' O4' C1' 136.5 145.9
C3' C4' C5' H4' 239.8 239.0
C5' C4' C3' O3' 81.6 119.9
C5' C4' C3' C2' 200.8 238.6
C5' C4' C3' H3' 323.6 357.2
O5' C5' H5'1 C4' 231.9 239.9
O5' C5' H5'1 H5'2 115.9 120.0
C4' C5' H5'1 H5'2 244.0 240.0
H5'1 C5' C4' O4' 178.5 301.7
H5'1 C5' C4' C3' 301.9 59.7
H5'1 C5' C4' H4' 62.2 180.7
O5' C5' H5'2 C4' 128.1 120.1
O5' C5' H5'2 H5'1 244.1 240.1
C4' C5' H5'2 H5'1 116.0 120.0
H5'2 C5' C4' O4' 69.0 181.7
H5'2 C5' C4' C3' 192.4 299.7
H5'2 C5' C4' H4' 312.6 60.8
O4' C4' C5' H5'1 178.5 301.7
O4' C4' C5' H5'2 69.0 181.7
C5' C4' O4' C3' 124.2 119.5
C5' C4' O4' H4' 244.5 239.0
C3' C4' O4' H4' 120.4 119.5
O4' C4' C3' O3' 208.7 239.3
O4' C4' C3' C2' 327.9 358.1
O4' C4' C3' H3' 90.7 116.7
C4' O4' C1' C2' 12.7 320.0
C4' O4' C1' N9 250.3 201.3
C4' O4' C1' H1' 132.0 78.4
C3' C4' C5' H5'1 301.9 59.7
C3' C4' C5' H5'2 192.4 299.7
C5' C4' C3' O4' 232.9 240.5
C5' C4' C3' H4' 116.0 121.0
O4' C4' C3' H4' 243.1 240.5
C3' C4' O4' C1' 12.3 26.4
O3' C3' C4' C2' 240.9 241.2
O3' C3' C4' H3' 118.0 122.7
C4' C3' O3' HO3' 180.0 176.2
C2' C3' C4' H3' 237.1 241.4
C4' C3' C2' O2' 285.4 220.8
C4' C3' C2' C1' 37.1 339.0
C4' C3' C2' H2' 162.9 97.2
H4' C4' C5' H5'1 62.2 180.7
H4' C4' C5' H5'2 312.6 60.8
C5' C4' H4' O4' 122.3 121.0
C5' C4' H4' C3' 240.8 239.0
O4' C4' H4' C3' 118.4 118.0
H4' C4' O4' C1' 252.0 266.9
H4' C4' C3' O3' 325.7 358.9
H4' C4' C3' C2' 84.8 117.6
H4' C4' C3' H3' 207.7 236.2
C1' O4' C4' C3' 12.3 26.4
C1' O4' C4' H4' 252.0 266.9
C3' C2' C1' O4' 327.7 37.1
O2' C2' C1' O4' 81.6 155.2
O4' C1' C2' H2' 203.6 278.8
C2' C1' O4' N9 122.4 118.7
C2' C1' O4' H1' 240.7 241.6
N9 C1' O4' H1' 118.3 122.9
O4' C1' N9 C8 28.4 28.5
O4' C1' N9 C4 222.4 208.3
O3' C3' C4' H4' 325.7 358.9
C4' C3' O3' C2' 112.6 114.8
C4' C3' O3' H3' 236.1 237.3
C2' C3' O3' H3' 123.5 122.5
O3' C3' C2' O2' 44.1 339.8
O3' C3' C2' C1' 155.7 98.0
O3' C3' C2' H2' 281.5 216.2
C2' C3' C4' H4' 84.8 117.6
C4' C3' C2' O3' 241.3 241.0
C4' C3' C2' H3' 123.3 118.6
O4' C1' C2' C3' 327.7 37.1
O3' C3' C2' H3' 242.0 237.6
C2' C3' O3' HO3' 67.4 61.4
O2' C2' C3' C1' 248.3 241.8
O2' C2' C3' H2' 122.5 123.6
C3' C2' O2' HO2' 180.0 292.7
C1' C2' C3' H2' 234.2 241.8
C3' C2' C1' N9 89.9 155.7
C3' C2' C1' H1' 208.2 278.6
H3' C3' C4' H4' 207.7 236.2
C4' C3' H3' O3' 121.9 122.9
C4' C3' H3' C2' 244.2 245.4
O3' C3' H3' C2' 122.3 122.5
H3' C3' O3' HO3' 303.9 299.0
H3' C3' C2' O2' 162.1 102.3
H3' C3' C2' C1' 273.8 220.4
H3' C3' C2' H2' 39.6 338.6
HO3' O3' C3' C2' 67.4 61.4
HO3' O3' C3' H3' 303.9 299.0
O4' C1' C2' O2' 81.6 155.2
O2' C2' C3' H3' 162.1 102.3
C3' C2' O2' C1' 107.9 112.7
C3' C2' O2' H2' 234.6 236.3
C1' C2' O2' H2' 126.6 123.6
O2' C2' C1' N9 203.7 273.8
O2' C2' C1' H1' 322.0 36.8
O4' C1' C2' N9 237.8 241.4
O4' C1' C2' H1' 119.5 118.4
C1' C2' C3' H3' 273.8 220.4
C3' C2' C1' O2' 246.1 241.8
C3' C2' C1' H2' 124.1 118.3
O2' C2' C1' H2' 237.9 236.4
C1' C2' O2' HO2' 72.0 180.0
N9 C1' C2' H1' 241.7 237.0
C2' C1' N9 C8 267.1 274.3
C2' C1' N9 C4 101.1 94.1
H2' C2' C3' H3' 39.6 338.6
C3' C2' H2' O2' 122.5 123.6
C3' C2' H2' C1' 243.0 247.3
O2' C2' H2' C1' 120.5 123.6
H2' C2' O2' HO2' 305.4 56.4
H2' C2' C1' N9 325.8 37.4
H2' C2' C1' H1' 84.1 160.4
HO2' O2' C2' C1' 72.0 180.0
HO2' O2' C2' H2' 305.4 56.4
O4' C1' N9 C2' 121.3 114.2
O4' C1' N9 H1' 240.5 237.1
N9 C1' C2' H2' 325.8 37.4
C2' C1' N9 H1' 119.2 122.9
C8 N9 C1' C4 166.0 180.2
C1' N9 C8 N7 188.8 180.0
C1' N9 C8 H8 8.8 0.1
C1' N9 C4 C5 173.7 179.8
C1' N9 C4 N3 355.9 0.7
O4' C1' H1' C2' 240.6 246.0
O4' C1' H1' N9 120.2 123.0
H1' C1' C2' H2' 84.1 160.4
C2' C1' H1' N9 239.5 237.0
H1' C1' N9 C8 147.9 151.4
H1' C1' N9 C4 341.9 331.2
C8 N9 C1' H1' 147.9 151.4
C1' N9 C8 C4 192.2 179.8
C8 N9 C4 C5 4.9 359.6
C8 N9 C4 N3 187.0 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.4 0.1
C4 N9 C1' H1' 341.9 331.2
C1' N9 C4 C8 168.8 180.2
C4 N9 C8 N7 356.6 0.2
C4 N9 C8 H8 176.6 180.2
N7 C5 C4 N9 355.1 0.4
C6 C5 C4 N9 180.8 180.1
C5 C4 N9 N3 177.8 179.1
C2 N3 C4 N9 184.7 179.6
N7 C8 N9 C4 356.6 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 175.9 180.0
C8 N7 C5 C4 2.9 359.7
H8 C8 N9 C4 176.6 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.4 180.0
N9 C4 C5 N7 355.1 0.4
C5 N7 C8 H8 180.4 180.0
C6 C5 N7 C4 173.1 180.3
N7 C5 C6 N6 1.7 360.0
N7 C5 C6 N1 183.1 179.9
N7 C5 C4 N3 172.9 179.7
N9 C4 C5 C6 180.8 180.1
N7 C5 C6 C4 187.3 179.6
C6 C5 C4 N3 358.6 359.4
N6 C6 C5 N1 178.7 180.0
C5 C6 N6 HN61 180.0 180.1
C5 C6 N6 HN62 54.8 360.0
C5 C6 N1 C2 3.1 0.0
N9 C4 C5 N3 182.2 180.7
N7 C5 C4 C6 174.3 180.3
C4 C5 C6 N6 174.5 180.3
C4 C5 C6 N1 355.8 0.3
C2 N3 C4 C5 7.3 0.6
N6 C6 C5 C4 174.5 180.3
C5 C6 N6 N1 181.4 180.0
N6 C6 N1 C2 184.4 180.0
HN61 N6 C6 HN62 125.3 180.1
N1 C6 C5 C4 355.8 0.3
C5 C6 N1 N6 178.7 180.0
N1 C6 N6 HN61 358.7 0.1
N1 C6 N6 HN62 233.4 180.0
C6 N1 C2 N3 4.4 360.0
C6 N1 C2 H2 184.3 179.9
HN61 N6 C6 N1 358.7 0.1
C6 N6 HN61 HN62 234.7 179.9
HN62 N6 C6 N1 233.4 180.0
C6 N6 HN62 HN61 134.3 180.1
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 350.9 359.7
N9 C4 N3 C2 184.7 179.6
C5 C4 N3 C2 7.3 0.6
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 171.0 179.8
N9 C4 N3 C5 177.4 179.0
C4 N3 C2 H2 171.0 179.8