PDB Chemical Component AHP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AHP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.525 |
1.469 |
| N |
H |
1.021 |
1.009 |
| N |
H2 |
1.019 |
1.008 |
| CA |
C |
1.539 |
1.505 |
| CA |
CB |
1.572 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.237 |
1.208 |
| C |
OXT |
1.346 |
1.342 |
| OXT |
HXT |
0.949 |
0.968 |
| CB |
CG |
1.578 |
1.528 |
| CB |
HB2 |
1.116 |
1.090 |
| CB |
HB3 |
1.115 |
1.089 |
| CG |
CD |
1.555 |
1.529 |
| CG |
HG2 |
1.114 |
1.090 |
| CG |
HG3 |
1.116 |
1.090 |
| CD |
CE |
1.556 |
1.529 |
| CD |
HD2 |
1.114 |
1.090 |
| CD |
HD3 |
1.115 |
1.090 |
| CE |
CZ |
1.539 |
1.530 |
| CE |
HE2 |
1.114 |
1.090 |
| CE |
HE3 |
1.116 |
1.090 |
| CZ |
HZ1 |
1.114 |
1.090 |
| CZ |
HZ2 |
1.115 |
1.090 |
| CZ |
HZ3 |
1.114 |
1.089 |
Bond Angles for AHP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
118.7 |
106.8 |
| CA |
N |
H2 |
108.9 |
106.7 |
| N |
CA |
C |
118.7 |
109.5 |
| N |
CA |
CB |
110.7 |
109.4 |
| N |
CA |
HA |
102.2 |
109.4 |
| H |
N |
H2 |
108.9 |
106.6 |
| C |
CA |
CB |
110.8 |
109.6 |
| C |
CA |
HA |
102.1 |
109.5 |
| CA |
C |
O |
120.5 |
120.0 |
| CA |
C |
OXT |
115.9 |
120.0 |
| CB |
CA |
HA |
111.6 |
109.4 |
| CA |
CB |
CG |
115.8 |
109.6 |
| CA |
CB |
HB2 |
109.9 |
109.5 |
| CA |
CB |
HB3 |
109.9 |
109.5 |
| O |
C |
OXT |
123.6 |
119.9 |
| C |
OXT |
HXT |
115.9 |
120.0 |
| CG |
CB |
HB2 |
109.9 |
109.4 |
| CG |
CB |
HB3 |
109.9 |
109.5 |
| CB |
CG |
CD |
117.6 |
109.6 |
| CB |
CG |
HG2 |
109.3 |
109.5 |
| CB |
CG |
HG3 |
109.3 |
109.5 |
| HB2 |
CB |
HB3 |
100.3 |
109.5 |
| CD |
CG |
HG2 |
109.2 |
109.4 |
| CD |
CG |
HG3 |
109.2 |
109.4 |
| CG |
CD |
CE |
112.5 |
109.6 |
| CG |
CD |
HD2 |
111.1 |
109.5 |
| CG |
CD |
HD3 |
111.1 |
109.5 |
| HG2 |
CG |
HG3 |
100.9 |
109.4 |
| CE |
CD |
HD2 |
111.1 |
109.4 |
| CE |
CD |
HD3 |
111.1 |
109.4 |
| CD |
CE |
CZ |
119.4 |
109.6 |
| CD |
CE |
HE2 |
108.6 |
109.5 |
| CD |
CE |
HE3 |
108.7 |
109.5 |
| HD2 |
CD |
HD3 |
99.3 |
109.4 |
| CZ |
CE |
HE2 |
108.7 |
109.4 |
| CZ |
CE |
HE3 |
108.6 |
109.4 |
| CE |
CZ |
HZ1 |
119.4 |
109.5 |
| CE |
CZ |
HZ2 |
108.6 |
109.4 |
| CE |
CZ |
HZ3 |
108.6 |
109.4 |
| HE2 |
CE |
HE3 |
101.3 |
109.4 |
| HZ1 |
CZ |
HZ2 |
108.6 |
109.5 |
| HZ1 |
CZ |
HZ3 |
108.6 |
109.6 |
| HZ2 |
CZ |
HZ3 |
101.4 |
109.5 |
Torsion Angles for AHP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.7 |
| C |
CA |
N |
CB |
129.7 |
120.1 |
| C |
CA |
N |
HA |
248.8 |
240.0 |
| N |
CA |
C |
O |
145.9 |
329.9 |
| N |
CA |
C |
OXT |
324.5 |
150.0 |
| CB |
CA |
N |
HA |
119.0 |
119.9 |
| N |
CA |
CB |
CG |
51.3 |
300.0 |
| N |
CA |
CB |
HB2 |
176.6 |
180.0 |
| N |
CA |
CB |
HB3 |
286.0 |
60.1 |
| CA |
N |
H |
H2 |
234.8 |
246.2 |
| H |
N |
CA |
C |
180.0 |
173.8 |
| H |
N |
CA |
CB |
50.2 |
53.7 |
| H |
N |
CA |
HA |
291.2 |
293.8 |
| CA |
N |
H2 |
H |
130.7 |
113.8 |
| H2 |
N |
CA |
C |
54.8 |
60.0 |
| H2 |
N |
CA |
CB |
285.0 |
299.9 |
| H2 |
N |
CA |
HA |
166.0 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.8 |
| C |
CA |
N |
H2 |
54.8 |
60.0 |
| N |
CA |
C |
CB |
230.3 |
240.0 |
| N |
CA |
C |
HA |
111.3 |
120.0 |
| CB |
CA |
C |
HA |
241.0 |
240.0 |
| C |
CA |
CB |
CG |
277.5 |
180.0 |
| C |
CA |
CB |
HB2 |
42.7 |
60.0 |
| C |
CA |
CB |
HB3 |
152.2 |
300.0 |
| O |
C |
CA |
OXT |
181.5 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| CB |
CA |
N |
H |
50.2 |
53.7 |
| CB |
CA |
N |
H2 |
285.0 |
299.9 |
| N |
CA |
CB |
C |
133.8 |
120.1 |
| N |
CA |
CB |
HA |
246.9 |
240.1 |
| C |
CA |
CB |
HA |
113.0 |
120.0 |
| CB |
CA |
C |
O |
275.6 |
89.9 |
| CB |
CA |
C |
OXT |
94.1 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
CD |
273.1 |
180.0 |
| CA |
CB |
CG |
HG2 |
38.4 |
60.0 |
| CA |
CB |
CG |
HG3 |
147.9 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
120.0 |
| HA |
CA |
N |
H |
291.2 |
293.8 |
| HA |
CA |
N |
H2 |
166.0 |
180.0 |
| N |
CA |
HA |
C |
236.7 |
240.0 |
| N |
CA |
HA |
CB |
118.3 |
119.9 |
| C |
CA |
HA |
CB |
241.6 |
239.9 |
| HA |
CA |
C |
O |
34.6 |
210.0 |
| HA |
CA |
C |
OXT |
213.1 |
30.0 |
| HA |
CA |
CB |
CG |
164.4 |
59.9 |
| HA |
CA |
CB |
HB2 |
289.7 |
299.9 |
| HA |
CA |
CB |
HB3 |
39.2 |
180.0 |
| O |
C |
CA |
CB |
275.6 |
89.9 |
| O |
C |
CA |
HA |
34.6 |
210.0 |
| CA |
C |
O |
OXT |
178.4 |
180.1 |
| O |
C |
OXT |
HXT |
358.5 |
0.0 |
| OXT |
C |
CA |
CB |
94.1 |
270.0 |
| OXT |
C |
CA |
HA |
213.1 |
30.0 |
| CA |
C |
OXT |
O |
181.5 |
179.9 |
| CG |
CB |
CA |
HA |
164.4 |
59.9 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
240.1 |
| CD |
CG |
CB |
HG2 |
234.7 |
120.0 |
| CD |
CG |
CB |
HG3 |
125.2 |
240.0 |
| CB |
CG |
CD |
CE |
293.7 |
180.0 |
| CB |
CG |
CD |
HD2 |
58.9 |
60.0 |
| CB |
CG |
CD |
HD3 |
168.5 |
300.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
120.0 |
| HB2 |
CB |
CA |
HA |
289.7 |
299.9 |
| CA |
CB |
HB2 |
CG |
231.4 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
115.7 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
244.3 |
119.9 |
| HB2 |
CB |
CG |
CD |
147.8 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
273.1 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
22.6 |
60.0 |
| HB3 |
CB |
CA |
HA |
39.2 |
180.0 |
| CA |
CB |
HB3 |
CG |
128.6 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
244.3 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
115.7 |
240.1 |
| HB3 |
CB |
CG |
CD |
38.4 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
163.7 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
273.2 |
180.0 |
| CD |
CG |
CB |
HB2 |
147.8 |
300.0 |
| CD |
CG |
CB |
HB3 |
38.4 |
60.0 |
| CB |
CG |
CD |
HG2 |
125.3 |
240.0 |
| CB |
CG |
CD |
HG3 |
234.7 |
120.1 |
| HG2 |
CG |
CD |
HG3 |
109.5 |
240.1 |
| CE |
CD |
CG |
HD2 |
234.7 |
120.0 |
| CE |
CD |
CG |
HD3 |
125.2 |
240.0 |
| CG |
CD |
CE |
CZ |
83.2 |
180.0 |
| CG |
CD |
CE |
HE2 |
208.5 |
60.0 |
| CG |
CD |
CE |
HE3 |
317.9 |
300.0 |
| HD2 |
CD |
CG |
HD3 |
250.5 |
120.0 |
| HG2 |
CG |
CB |
HB2 |
273.1 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
163.7 |
300.0 |
| CB |
CG |
HG2 |
CD |
230.0 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
115.0 |
240.0 |
| CD |
CG |
HG2 |
HG3 |
245.0 |
119.9 |
| HG2 |
CG |
CD |
CE |
168.4 |
300.0 |
| HG2 |
CG |
CD |
HD2 |
293.7 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
43.2 |
60.1 |
| HG3 |
CG |
CB |
HB2 |
22.6 |
60.0 |
| HG3 |
CG |
CB |
HB3 |
273.2 |
180.0 |
| CB |
CG |
HG3 |
CD |
130.0 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
245.0 |
120.0 |
| CD |
CG |
HG3 |
HG2 |
115.0 |
240.1 |
| HG3 |
CG |
CD |
CE |
59.0 |
59.9 |
| HG3 |
CG |
CD |
HD2 |
184.2 |
299.9 |
| HG3 |
CG |
CD |
HD3 |
293.8 |
180.0 |
| CE |
CD |
CG |
HG2 |
168.4 |
300.0 |
| CE |
CD |
CG |
HG3 |
59.0 |
59.9 |
| CG |
CD |
CE |
HD2 |
125.3 |
240.0 |
| CG |
CD |
CE |
HD3 |
234.8 |
120.1 |
| HD2 |
CD |
CE |
HD3 |
109.5 |
240.1 |
| CZ |
CE |
CD |
HE2 |
234.7 |
120.0 |
| CZ |
CE |
CD |
HE3 |
125.3 |
240.0 |
| CD |
CE |
CZ |
HZ1 |
180.0 |
180.1 |
| CD |
CE |
CZ |
HZ2 |
305.2 |
300.0 |
| CD |
CE |
CZ |
HZ3 |
54.8 |
60.0 |
| HE2 |
CE |
CD |
HE3 |
250.6 |
120.0 |
| HD2 |
CD |
CG |
HG2 |
293.7 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
184.2 |
299.9 |
| CG |
CD |
HD2 |
CE |
234.0 |
120.1 |
| CG |
CD |
HD2 |
HD3 |
117.0 |
240.0 |
| CE |
CD |
HD2 |
HD3 |
243.0 |
119.9 |
| HD2 |
CD |
CE |
CZ |
317.9 |
300.0 |
| HD2 |
CD |
CE |
HE2 |
83.2 |
180.0 |
| HD2 |
CD |
CE |
HE3 |
192.6 |
60.0 |
| HD3 |
CD |
CG |
HG2 |
43.2 |
60.1 |
| HD3 |
CD |
CG |
HG3 |
293.8 |
180.0 |
| CG |
CD |
HD3 |
CE |
126.0 |
239.9 |
| CG |
CD |
HD3 |
HD2 |
243.0 |
120.0 |
| CE |
CD |
HD3 |
HD2 |
117.0 |
240.1 |
| HD3 |
CD |
CE |
CZ |
208.4 |
60.0 |
| HD3 |
CD |
CE |
HE2 |
333.7 |
300.0 |
| HD3 |
CD |
CE |
HE3 |
83.1 |
180.0 |
| CZ |
CE |
CD |
HD2 |
317.9 |
300.0 |
| CZ |
CE |
CD |
HD3 |
208.4 |
60.0 |
| CD |
CE |
CZ |
HE2 |
125.3 |
240.0 |
| CD |
CE |
CZ |
HE3 |
234.7 |
120.0 |
| HE2 |
CE |
CZ |
HE3 |
109.4 |
240.1 |
| HZ1 |
CZ |
CE |
HZ2 |
234.8 |
240.0 |
| HZ1 |
CZ |
CE |
HZ3 |
125.3 |
120.1 |
| HZ2 |
CZ |
CE |
HZ3 |
250.5 |
240.1 |
| HE2 |
CE |
CD |
HD2 |
83.2 |
180.0 |
| HE2 |
CE |
CD |
HD3 |
333.7 |
300.0 |
| CD |
CE |
HE2 |
CZ |
228.6 |
120.1 |
| CD |
CE |
HE2 |
HE3 |
114.3 |
240.0 |
| CZ |
CE |
HE2 |
HE3 |
245.7 |
119.9 |
| HE2 |
CE |
CZ |
HZ1 |
54.7 |
300.1 |
| HE2 |
CE |
CZ |
HZ2 |
179.9 |
60.1 |
| HE2 |
CE |
CZ |
HZ3 |
289.4 |
180.0 |
| HE3 |
CE |
CD |
HD2 |
192.6 |
60.0 |
| HE3 |
CE |
CD |
HD3 |
83.1 |
180.0 |
| CD |
CE |
HE3 |
CZ |
131.4 |
239.9 |
| CD |
CE |
HE3 |
HE2 |
245.7 |
120.0 |
| CZ |
CE |
HE3 |
HE2 |
114.3 |
240.1 |
| HE3 |
CE |
CZ |
HZ1 |
305.3 |
60.0 |
| HE3 |
CE |
CZ |
HZ2 |
70.5 |
180.0 |
| HE3 |
CE |
CZ |
HZ3 |
180.0 |
299.9 |
| HZ1 |
CZ |
CE |
HE2 |
54.7 |
300.1 |
| HZ1 |
CZ |
CE |
HE3 |
305.3 |
60.0 |
| CE |
CZ |
HZ1 |
HZ2 |
125.2 |
119.9 |
| CE |
CZ |
HZ1 |
HZ3 |
234.7 |
240.0 |
| HZ2 |
CZ |
HZ1 |
HZ3 |
109.5 |
120.0 |
| HZ2 |
CZ |
CE |
HE2 |
179.9 |
60.1 |
| HZ2 |
CZ |
CE |
HE3 |
70.5 |
180.0 |
| CE |
CZ |
HZ2 |
HZ1 |
228.7 |
240.0 |
| CE |
CZ |
HZ2 |
HZ3 |
114.3 |
119.9 |
| HZ1 |
CZ |
HZ2 |
HZ3 |
245.7 |
239.9 |
| HZ3 |
CZ |
CE |
HE2 |
289.4 |
180.0 |
| HZ3 |
CZ |
CE |
HE3 |
180.0 |
299.9 |
| CE |
CZ |
HZ3 |
HZ1 |
131.4 |
120.1 |
| CE |
CZ |
HZ3 |
HZ2 |
245.7 |
240.1 |
| HZ1 |
CZ |
HZ3 |
HZ2 |
114.3 |
120.0 |