PDB Chemical Component AHM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AHM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P1 O1P 1.485 1.480
P1 O2P 1.498 1.609
P1 O3P 1.595 1.610
P1 O1 1.598 1.610
O2P HOP2 0.950 0.967
O3P HOP3 0.950 0.967
O1 C1 1.427 1.429
C1 C2 1.517 1.530
C1 H11 1.115 1.090
C1 H12 1.114 1.089
C2 C3 1.529 1.550
C2 O5 1.420 1.436
C2 H2 1.115 1.089
C3 O3 1.408 1.429
C3 C4 1.534 1.551
C3 H3 1.115 1.089
O3 HO3 0.950 0.967
C4 O4 1.430 1.429
C4 C5 1.551 1.544
C4 H4 1.115 1.089
O4 HO4 0.950 0.967
C5 O5 1.429 1.433
C5 C6 1.502 1.530
C5 H5 1.115 1.089
C6 O6 1.426 1.428
C6 H61 1.115 1.090
C6 H62 1.114 1.090
O6 P2 1.625 1.610
P2 O4P 1.522 1.481
P2 O5P 1.523 1.609
P2 O6P 1.516 1.609
O5P HOP5 0.950 0.967
O6P HOP6 0.950 0.967

Bond Angles for AHM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P1 O2P 119.2 109.4
O1P P1 O3P 106.4 109.4
O1P P1 O1 111.0 109.4
O2P P1 O3P 110.1 109.5
O2P P1 O1 105.0 109.5
P1 O2P HOP2 119.2 106.8
O3P P1 O1 104.3 109.5
P1 O3P HOP3 106.4 106.8
P1 O1 C1 121.4 106.8
O1 C1 C2 108.8 109.5
O1 C1 H11 112.4 109.5
O1 C1 H12 112.5 109.5
C2 C1 H11 112.5 109.5
C2 C1 H12 112.4 109.5
C1 C2 C3 115.1 110.5
C1 C2 O5 107.8 110.3
C1 C2 H2 105.3 110.3
H11 C1 H12 98.0 109.5
C3 C2 O5 104.3 105.1
C3 C2 H2 108.7 110.3
C2 C3 O3 109.6 111.1
C2 C3 C4 102.0 101.0
C2 C3 H3 116.5 111.2
O5 C2 H2 115.9 110.3
C2 O5 C5 110.6 110.0
O3 C3 C4 115.7 111.1
O3 C3 H3 103.1 110.9
C3 O3 HO3 109.6 106.8
C4 C3 H3 110.6 111.2
C3 C4 O4 115.6 110.9
C3 C4 C5 102.8 102.2
C3 C4 H4 110.0 110.9
O4 C4 C5 109.6 111.0
O4 C4 H4 103.3 110.7
C4 O4 HO4 115.6 106.8
C5 C4 H4 116.0 110.9
C4 C5 O5 106.4 107.6
C4 C5 C6 112.3 109.8
C4 C5 H5 109.9 109.9
O5 C5 C6 110.3 109.9
O5 C5 H5 112.0 109.9
C6 C5 H5 106.0 109.8
C5 C6 O6 107.9 109.5
C5 C6 H61 112.8 109.5
C5 C6 H62 112.8 109.5
O6 C6 H61 112.8 109.5
O6 C6 H62 112.8 109.4
C6 O6 P2 121.0 106.8
H61 C6 H62 97.7 109.4
O6 P2 O4P 107.5 109.4
O6 P2 O5P 108.1 109.5
O6 P2 O6P 101.9 109.5
O4P P2 O5P 112.1 109.4
O4P P2 O6P 114.5 109.5
O5P P2 O6P 112.0 109.5
P2 O5P HOP5 108.1 106.8
P2 O6P HOP6 101.9 106.8

Torsion Angles for AHM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P1 O1P O3P 234.9 120.0
O2P P1 O1P O1 122.1 240.0
O1P P1 O2P HOP2 180.0 299.9
O3P P1 O1P O1 247.2 120.0
O1P P1 O3P HOP3 180.0 180.0
O1P P1 O1 C1 291.3 60.0
O1P P1 O2P O3P 123.3 240.0
O1P P1 O2P O1 235.0 120.0
O3P P1 O2P O1 111.7 239.9
O2P P1 O3P HOP3 310.5 60.0
O2P P1 O1 C1 161.3 179.9
O1P P1 O3P O2P 229.5 120.0
O1P P1 O3P O1 117.4 240.0
O2P P1 O3P O1 247.8 120.1
O3P P1 O2P HOP2 56.7 59.8
O3P P1 O1 C1 45.5 300.1
O1P P1 O1 O2P 130.0 240.1
O1P P1 O1 O3P 245.8 119.9
O2P P1 O1 O3P 115.8 239.9
O1 P1 O2P HOP2 305.0 179.9
O1 P1 O3P HOP3 62.6 300.0
P1 O1 C1 C2 251.1 180.0
P1 O1 C1 H11 125.8 60.0
P1 O1 C1 H12 16.3 300.0
HOP2 O2P P1 O3P 56.7 59.8
HOP2 O2P P1 O1 305.0 179.9
HOP3 O3P P1 O1 62.6 300.0
C2 C1 O1 H11 125.3 120.0
C2 C1 O1 H12 234.7 240.0
O1 C1 C2 C3 223.7 177.2
O1 C1 C2 O5 107.7 61.4
O1 C1 C2 H2 343.4 299.3
H11 C1 O1 H12 109.5 120.0
O1 C1 C2 H11 234.7 240.0
O1 C1 C2 H12 125.3 120.0
H11 C1 C2 H12 250.5 240.0
C3 C2 C1 O5 116.0 115.8
C3 C2 C1 H2 240.3 237.9
C1 C2 C3 O3 81.7 86.7
C1 C2 C3 C4 204.7 204.6
C1 C2 C3 H3 325.2 322.6
O5 C2 C1 H2 124.3 122.1
C1 C2 O5 C5 151.9 143.4
O1 C1 H11 C2 123.2 120.0
O1 C1 H11 H12 241.6 240.0
C2 C1 H11 H12 118.4 120.0
H11 C1 C2 C3 348.9 297.2
H11 C1 C2 O5 232.9 181.4
H11 C1 C2 H2 108.6 59.3
O1 C1 H12 C2 236.8 240.0
O1 C1 H12 H11 118.4 120.0
C2 C1 H12 H11 241.6 240.0
H12 C1 C2 C3 98.4 57.2
H12 C1 C2 O5 342.4 301.5
H12 C1 C2 H2 218.1 179.4
C3 C2 C1 H11 348.9 297.2
C3 C2 C1 H12 98.4 57.2
C1 C2 C3 O5 242.0 241.1
C1 C2 C3 H2 117.8 122.2
O5 C2 C3 H2 235.8 241.1
C3 C2 O5 C5 29.0 24.3
O3 C3 C2 C4 237.0 242.1
O3 C3 C2 H3 116.5 124.1
C2 C3 O3 HO3 180.0 176.6
C4 C3 C2 H3 239.5 242.0
C2 C3 C4 O4 150.8 152.5
C2 C3 C4 C5 31.4 34.1
C2 C3 C4 H4 267.3 275.9
O5 C2 C1 H11 232.9 181.4
O5 C2 C1 H12 342.4 301.5
C1 C2 O5 C3 122.9 119.1
C1 C2 O5 H2 242.4 237.9
C3 C2 O5 H2 119.5 118.8
O5 C2 C3 O3 199.6 205.6
O5 C2 C3 C4 322.7 323.6
O5 C2 C3 H3 83.2 81.6
C4 C5 O5 C2 351.6 358.3
C2 O5 C5 C6 113.7 117.9
C2 O5 C5 H5 231.5 238.8
H2 C2 C1 H11 108.6 59.3
H2 C2 C1 H12 218.1 179.4
C1 C2 H2 C3 236.1 237.7
C1 C2 H2 O5 119.0 122.1
C3 C2 H2 O5 242.9 244.3
H2 C2 C3 O3 323.9 324.5
H2 C2 C3 C4 86.9 82.5
H2 C2 C3 H3 207.4 200.5
H2 C2 O5 C5 269.5 265.5
O3 C3 C2 O5 199.6 205.6
O3 C3 C2 H2 323.9 324.5
C2 C3 O3 C4 114.6 111.6
C2 C3 O3 H3 235.3 235.8
C4 C3 O3 H3 120.8 124.2
O3 C3 C4 O4 269.6 270.5
O3 C3 C4 C5 150.3 152.1
O3 C3 C4 H4 26.1 33.8
C4 C3 C2 O5 322.7 323.6
C4 C3 C2 H2 86.9 82.5
C2 C3 C4 O3 241.2 242.1
C2 C3 C4 H3 124.5 118.0
O3 C3 C4 H3 243.4 235.9
C4 C3 O3 HO3 65.4 65.0
O4 C4 C3 C5 119.4 118.4
O4 C4 C3 H4 243.5 236.6
C3 C4 O4 HO4 180.0 61.4
C5 C4 C3 H4 124.1 118.2
C3 C4 C5 O5 344.5 338.6
C3 C4 C5 C6 223.7 219.0
C3 C4 C5 H5 106.0 98.2
H3 C3 C2 O5 83.2 81.6
H3 C3 C2 H2 207.4 200.5
C2 C3 H3 O3 120.0 124.2
C2 C3 H3 C4 244.2 248.3
O3 C3 H3 C4 124.2 124.2
H3 C3 O3 HO3 304.7 300.8
H3 C3 C4 O4 26.3 34.5
H3 C3 C4 C5 266.9 276.1
H3 C3 C4 H4 142.8 157.9
HO3 O3 C3 C4 65.4 65.0
HO3 O3 C3 H3 304.7 300.8
O4 C4 C3 H3 26.3 34.5
C3 C4 O4 C5 244.4 247.1
C3 C4 O4 H4 120.2 123.5
C5 C4 O4 H4 235.8 236.4
O4 C4 C5 O5 221.0 220.3
O4 C4 C5 C6 100.2 100.7
O4 C4 C5 H5 342.5 339.9
C2 O5 C5 C4 351.6 358.3
C5 C4 C3 H3 266.9 276.1
C3 C4 C5 O4 123.5 118.3
C3 C4 C5 H4 239.9 241.7
O4 C4 C5 H4 116.4 123.5
C5 C4 O4 HO4 295.6 174.4
O5 C5 C4 C6 120.8 119.6
O5 C5 C4 H5 238.5 240.4
C6 C5 C4 H5 117.8 120.8
C4 C5 C6 O6 247.7 180.0
C4 C5 C6 H61 122.4 300.0
C4 C5 C6 H62 13.0 60.0
H4 C4 C3 H3 142.8 157.9
C3 C4 H4 O4 236.0 236.5
C3 C4 H4 C5 116.1 112.9
O4 C4 H4 C5 240.1 236.3
H4 C4 O4 HO4 59.8 297.9
H4 C4 C5 O5 104.6 96.9
H4 C4 C5 C6 343.8 337.3
H4 C4 C5 H5 226.1 216.4
HO4 O4 C4 C5 295.6 174.4
HO4 O4 C4 H4 59.8 297.9
C5 O5 C2 H2 269.5 265.5
O5 C5 C4 H4 104.6 96.9
C4 C5 O5 C6 237.9 240.5
C4 C5 O5 H5 120.1 119.6
C6 C5 O5 H5 242.2 239.1
O5 C5 C6 O6 129.2 61.8
O5 C5 C6 H61 4.0 181.9
O5 C5 C6 H62 254.5 301.8
C6 C5 C4 H4 343.8 337.3
C4 C5 C6 O5 118.5 118.2
C4 C5 C6 H5 239.9 239.1
O5 C5 C6 H5 121.5 120.9
O6 C6 C5 H61 125.2 240.0
O6 C6 C5 H62 234.7 120.0
C5 C6 O6 P2 138.6 180.0
H61 C6 C5 H62 109.5 240.0
H5 C5 C4 H4 226.1 216.4
C4 C5 H5 O5 242.0 241.8
C4 C5 H5 C6 121.6 120.9
O5 C5 H5 C6 239.7 239.0
H5 C5 C6 O6 7.7 300.9
H5 C5 C6 H61 242.5 60.9
H5 C5 C6 H62 133.0 180.9
O6 C6 C5 H5 7.7 300.9
C5 C6 O6 H61 234.8 120.1
C5 C6 O6 H62 125.3 240.0
H61 C6 O6 H62 250.5 119.9
C6 O6 P2 O4P 42.0 60.1
C6 O6 P2 O5P 280.8 180.0
C6 O6 P2 O6P 162.7 300.1
H61 C6 C5 H5 242.5 60.9
C5 C6 H61 O6 122.6 240.0
C5 C6 H61 H62 241.3 120.0
O6 C6 H61 H62 118.7 240.0
H61 C6 O6 P2 263.8 59.9
H62 C6 C5 H5 133.0 180.9
C5 C6 H62 O6 237.4 120.0
C5 C6 H62 H61 118.7 240.0
O6 C6 H62 H61 241.3 120.0
H62 C6 O6 P2 13.3 299.9
P2 O6 C6 H61 263.8 59.9
P2 O6 C6 H62 13.3 299.9
O4P P2 O6 O5P 121.2 240.1
O4P P2 O6 O6P 239.3 120.0
O5P P2 O6 O6P 118.1 239.9
O6 P2 O5P HOP5 180.0 180.0
O6 P2 O6P HOP6 180.0 300.0
O6 P2 O4P O5P 241.4 119.9
O6 P2 O4P O6P 112.4 240.0
O5P P2 O4P O6P 231.1 120.0
O4P P2 O5P HOP5 61.7 299.9
O4P P2 O6P HOP6 295.7 180.0
O6 P2 O5P O4P 118.3 240.1
O6 P2 O5P O6P 248.6 120.1
O4P P2 O5P O6P 130.2 240.0
O5P P2 O6P HOP6 64.7 60.1
O6 P2 O6P O4P 244.3 120.0
O6 P2 O6P O5P 115.3 239.9
O4P P2 O6P O5P 231.0 119.9
O6P P2 O5P HOP5 291.5 59.9
HOP5 O5P P2 O6P 291.5 59.9