PDB Chemical Component AHM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AHM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P1 |
O1P |
1.485 |
1.480 |
P1 |
O2P |
1.498 |
1.609 |
P1 |
O3P |
1.595 |
1.610 |
P1 |
O1 |
1.598 |
1.610 |
O2P |
HOP2 |
0.950 |
0.967 |
O3P |
HOP3 |
0.950 |
0.967 |
O1 |
C1 |
1.427 |
1.429 |
C1 |
C2 |
1.517 |
1.530 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.114 |
1.089 |
C2 |
C3 |
1.529 |
1.550 |
C2 |
O5 |
1.420 |
1.436 |
C2 |
H2 |
1.115 |
1.089 |
C3 |
O3 |
1.408 |
1.429 |
C3 |
C4 |
1.534 |
1.551 |
C3 |
H3 |
1.115 |
1.089 |
O3 |
HO3 |
0.950 |
0.967 |
C4 |
O4 |
1.430 |
1.429 |
C4 |
C5 |
1.551 |
1.544 |
C4 |
H4 |
1.115 |
1.089 |
O4 |
HO4 |
0.950 |
0.967 |
C5 |
O5 |
1.429 |
1.433 |
C5 |
C6 |
1.502 |
1.530 |
C5 |
H5 |
1.115 |
1.089 |
C6 |
O6 |
1.426 |
1.428 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.114 |
1.090 |
O6 |
P2 |
1.625 |
1.610 |
P2 |
O4P |
1.522 |
1.481 |
P2 |
O5P |
1.523 |
1.609 |
P2 |
O6P |
1.516 |
1.609 |
O5P |
HOP5 |
0.950 |
0.967 |
O6P |
HOP6 |
0.950 |
0.967 |
Bond Angles for AHM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1P |
P1 |
O2P |
119.2 |
109.4 |
O1P |
P1 |
O3P |
106.4 |
109.4 |
O1P |
P1 |
O1 |
111.0 |
109.4 |
O2P |
P1 |
O3P |
110.1 |
109.5 |
O2P |
P1 |
O1 |
105.0 |
109.5 |
P1 |
O2P |
HOP2 |
119.2 |
106.8 |
O3P |
P1 |
O1 |
104.3 |
109.5 |
P1 |
O3P |
HOP3 |
106.4 |
106.8 |
P1 |
O1 |
C1 |
121.4 |
106.8 |
O1 |
C1 |
C2 |
108.8 |
109.5 |
O1 |
C1 |
H11 |
112.4 |
109.5 |
O1 |
C1 |
H12 |
112.5 |
109.5 |
C2 |
C1 |
H11 |
112.5 |
109.5 |
C2 |
C1 |
H12 |
112.4 |
109.5 |
C1 |
C2 |
C3 |
115.1 |
110.5 |
C1 |
C2 |
O5 |
107.8 |
110.3 |
C1 |
C2 |
H2 |
105.3 |
110.3 |
H11 |
C1 |
H12 |
98.0 |
109.5 |
C3 |
C2 |
O5 |
104.3 |
105.1 |
C3 |
C2 |
H2 |
108.7 |
110.3 |
C2 |
C3 |
O3 |
109.6 |
111.1 |
C2 |
C3 |
C4 |
102.0 |
101.0 |
C2 |
C3 |
H3 |
116.5 |
111.2 |
O5 |
C2 |
H2 |
115.9 |
110.3 |
C2 |
O5 |
C5 |
110.6 |
110.0 |
O3 |
C3 |
C4 |
115.7 |
111.1 |
O3 |
C3 |
H3 |
103.1 |
110.9 |
C3 |
O3 |
HO3 |
109.6 |
106.8 |
C4 |
C3 |
H3 |
110.6 |
111.2 |
C3 |
C4 |
O4 |
115.6 |
110.9 |
C3 |
C4 |
C5 |
102.8 |
102.2 |
C3 |
C4 |
H4 |
110.0 |
110.9 |
O4 |
C4 |
C5 |
109.6 |
111.0 |
O4 |
C4 |
H4 |
103.3 |
110.7 |
C4 |
O4 |
HO4 |
115.6 |
106.8 |
C5 |
C4 |
H4 |
116.0 |
110.9 |
C4 |
C5 |
O5 |
106.4 |
107.6 |
C4 |
C5 |
C6 |
112.3 |
109.8 |
C4 |
C5 |
H5 |
109.9 |
109.9 |
O5 |
C5 |
C6 |
110.3 |
109.9 |
O5 |
C5 |
H5 |
112.0 |
109.9 |
C6 |
C5 |
H5 |
106.0 |
109.8 |
C5 |
C6 |
O6 |
107.9 |
109.5 |
C5 |
C6 |
H61 |
112.8 |
109.5 |
C5 |
C6 |
H62 |
112.8 |
109.5 |
O6 |
C6 |
H61 |
112.8 |
109.5 |
O6 |
C6 |
H62 |
112.8 |
109.4 |
C6 |
O6 |
P2 |
121.0 |
106.8 |
H61 |
C6 |
H62 |
97.7 |
109.4 |
O6 |
P2 |
O4P |
107.5 |
109.4 |
O6 |
P2 |
O5P |
108.1 |
109.5 |
O6 |
P2 |
O6P |
101.9 |
109.5 |
O4P |
P2 |
O5P |
112.1 |
109.4 |
O4P |
P2 |
O6P |
114.5 |
109.5 |
O5P |
P2 |
O6P |
112.0 |
109.5 |
P2 |
O5P |
HOP5 |
108.1 |
106.8 |
P2 |
O6P |
HOP6 |
101.9 |
106.8 |
Torsion Angles for AHM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2P |
P1 |
O1P |
O3P |
234.9 |
120.0 |
O2P |
P1 |
O1P |
O1 |
122.1 |
240.0 |
O1P |
P1 |
O2P |
HOP2 |
180.0 |
299.9 |
O3P |
P1 |
O1P |
O1 |
247.2 |
120.0 |
O1P |
P1 |
O3P |
HOP3 |
180.0 |
180.0 |
O1P |
P1 |
O1 |
C1 |
291.3 |
60.0 |
O1P |
P1 |
O2P |
O3P |
123.3 |
240.0 |
O1P |
P1 |
O2P |
O1 |
235.0 |
120.0 |
O3P |
P1 |
O2P |
O1 |
111.7 |
239.9 |
O2P |
P1 |
O3P |
HOP3 |
310.5 |
60.0 |
O2P |
P1 |
O1 |
C1 |
161.3 |
179.9 |
O1P |
P1 |
O3P |
O2P |
229.5 |
120.0 |
O1P |
P1 |
O3P |
O1 |
117.4 |
240.0 |
O2P |
P1 |
O3P |
O1 |
247.8 |
120.1 |
O3P |
P1 |
O2P |
HOP2 |
56.7 |
59.8 |
O3P |
P1 |
O1 |
C1 |
45.5 |
300.1 |
O1P |
P1 |
O1 |
O2P |
130.0 |
240.1 |
O1P |
P1 |
O1 |
O3P |
245.8 |
119.9 |
O2P |
P1 |
O1 |
O3P |
115.8 |
239.9 |
O1 |
P1 |
O2P |
HOP2 |
305.0 |
179.9 |
O1 |
P1 |
O3P |
HOP3 |
62.6 |
300.0 |
P1 |
O1 |
C1 |
C2 |
251.1 |
180.0 |
P1 |
O1 |
C1 |
H11 |
125.8 |
60.0 |
P1 |
O1 |
C1 |
H12 |
16.3 |
300.0 |
HOP2 |
O2P |
P1 |
O3P |
56.7 |
59.8 |
HOP2 |
O2P |
P1 |
O1 |
305.0 |
179.9 |
HOP3 |
O3P |
P1 |
O1 |
62.6 |
300.0 |
C2 |
C1 |
O1 |
H11 |
125.3 |
120.0 |
C2 |
C1 |
O1 |
H12 |
234.7 |
240.0 |
O1 |
C1 |
C2 |
C3 |
223.7 |
177.2 |
O1 |
C1 |
C2 |
O5 |
107.7 |
61.4 |
O1 |
C1 |
C2 |
H2 |
343.4 |
299.3 |
H11 |
C1 |
O1 |
H12 |
109.5 |
120.0 |
O1 |
C1 |
C2 |
H11 |
234.7 |
240.0 |
O1 |
C1 |
C2 |
H12 |
125.3 |
120.0 |
H11 |
C1 |
C2 |
H12 |
250.5 |
240.0 |
C3 |
C2 |
C1 |
O5 |
116.0 |
115.8 |
C3 |
C2 |
C1 |
H2 |
240.3 |
237.9 |
C1 |
C2 |
C3 |
O3 |
81.7 |
86.7 |
C1 |
C2 |
C3 |
C4 |
204.7 |
204.6 |
C1 |
C2 |
C3 |
H3 |
325.2 |
322.6 |
O5 |
C2 |
C1 |
H2 |
124.3 |
122.1 |
C1 |
C2 |
O5 |
C5 |
151.9 |
143.4 |
O1 |
C1 |
H11 |
C2 |
123.2 |
120.0 |
O1 |
C1 |
H11 |
H12 |
241.6 |
240.0 |
C2 |
C1 |
H11 |
H12 |
118.4 |
120.0 |
H11 |
C1 |
C2 |
C3 |
348.9 |
297.2 |
H11 |
C1 |
C2 |
O5 |
232.9 |
181.4 |
H11 |
C1 |
C2 |
H2 |
108.6 |
59.3 |
O1 |
C1 |
H12 |
C2 |
236.8 |
240.0 |
O1 |
C1 |
H12 |
H11 |
118.4 |
120.0 |
C2 |
C1 |
H12 |
H11 |
241.6 |
240.0 |
H12 |
C1 |
C2 |
C3 |
98.4 |
57.2 |
H12 |
C1 |
C2 |
O5 |
342.4 |
301.5 |
H12 |
C1 |
C2 |
H2 |
218.1 |
179.4 |
C3 |
C2 |
C1 |
H11 |
348.9 |
297.2 |
C3 |
C2 |
C1 |
H12 |
98.4 |
57.2 |
C1 |
C2 |
C3 |
O5 |
242.0 |
241.1 |
C1 |
C2 |
C3 |
H2 |
117.8 |
122.2 |
O5 |
C2 |
C3 |
H2 |
235.8 |
241.1 |
C3 |
C2 |
O5 |
C5 |
29.0 |
24.3 |
O3 |
C3 |
C2 |
C4 |
237.0 |
242.1 |
O3 |
C3 |
C2 |
H3 |
116.5 |
124.1 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
176.6 |
C4 |
C3 |
C2 |
H3 |
239.5 |
242.0 |
C2 |
C3 |
C4 |
O4 |
150.8 |
152.5 |
C2 |
C3 |
C4 |
C5 |
31.4 |
34.1 |
C2 |
C3 |
C4 |
H4 |
267.3 |
275.9 |
O5 |
C2 |
C1 |
H11 |
232.9 |
181.4 |
O5 |
C2 |
C1 |
H12 |
342.4 |
301.5 |
C1 |
C2 |
O5 |
C3 |
122.9 |
119.1 |
C1 |
C2 |
O5 |
H2 |
242.4 |
237.9 |
C3 |
C2 |
O5 |
H2 |
119.5 |
118.8 |
O5 |
C2 |
C3 |
O3 |
199.6 |
205.6 |
O5 |
C2 |
C3 |
C4 |
322.7 |
323.6 |
O5 |
C2 |
C3 |
H3 |
83.2 |
81.6 |
C4 |
C5 |
O5 |
C2 |
351.6 |
358.3 |
C2 |
O5 |
C5 |
C6 |
113.7 |
117.9 |
C2 |
O5 |
C5 |
H5 |
231.5 |
238.8 |
H2 |
C2 |
C1 |
H11 |
108.6 |
59.3 |
H2 |
C2 |
C1 |
H12 |
218.1 |
179.4 |
C1 |
C2 |
H2 |
C3 |
236.1 |
237.7 |
C1 |
C2 |
H2 |
O5 |
119.0 |
122.1 |
C3 |
C2 |
H2 |
O5 |
242.9 |
244.3 |
H2 |
C2 |
C3 |
O3 |
323.9 |
324.5 |
H2 |
C2 |
C3 |
C4 |
86.9 |
82.5 |
H2 |
C2 |
C3 |
H3 |
207.4 |
200.5 |
H2 |
C2 |
O5 |
C5 |
269.5 |
265.5 |
O3 |
C3 |
C2 |
O5 |
199.6 |
205.6 |
O3 |
C3 |
C2 |
H2 |
323.9 |
324.5 |
C2 |
C3 |
O3 |
C4 |
114.6 |
111.6 |
C2 |
C3 |
O3 |
H3 |
235.3 |
235.8 |
C4 |
C3 |
O3 |
H3 |
120.8 |
124.2 |
O3 |
C3 |
C4 |
O4 |
269.6 |
270.5 |
O3 |
C3 |
C4 |
C5 |
150.3 |
152.1 |
O3 |
C3 |
C4 |
H4 |
26.1 |
33.8 |
C4 |
C3 |
C2 |
O5 |
322.7 |
323.6 |
C4 |
C3 |
C2 |
H2 |
86.9 |
82.5 |
C2 |
C3 |
C4 |
O3 |
241.2 |
242.1 |
C2 |
C3 |
C4 |
H3 |
124.5 |
118.0 |
O3 |
C3 |
C4 |
H3 |
243.4 |
235.9 |
C4 |
C3 |
O3 |
HO3 |
65.4 |
65.0 |
O4 |
C4 |
C3 |
C5 |
119.4 |
118.4 |
O4 |
C4 |
C3 |
H4 |
243.5 |
236.6 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
61.4 |
C5 |
C4 |
C3 |
H4 |
124.1 |
118.2 |
C3 |
C4 |
C5 |
O5 |
344.5 |
338.6 |
C3 |
C4 |
C5 |
C6 |
223.7 |
219.0 |
C3 |
C4 |
C5 |
H5 |
106.0 |
98.2 |
H3 |
C3 |
C2 |
O5 |
83.2 |
81.6 |
H3 |
C3 |
C2 |
H2 |
207.4 |
200.5 |
C2 |
C3 |
H3 |
O3 |
120.0 |
124.2 |
C2 |
C3 |
H3 |
C4 |
244.2 |
248.3 |
O3 |
C3 |
H3 |
C4 |
124.2 |
124.2 |
H3 |
C3 |
O3 |
HO3 |
304.7 |
300.8 |
H3 |
C3 |
C4 |
O4 |
26.3 |
34.5 |
H3 |
C3 |
C4 |
C5 |
266.9 |
276.1 |
H3 |
C3 |
C4 |
H4 |
142.8 |
157.9 |
HO3 |
O3 |
C3 |
C4 |
65.4 |
65.0 |
HO3 |
O3 |
C3 |
H3 |
304.7 |
300.8 |
O4 |
C4 |
C3 |
H3 |
26.3 |
34.5 |
C3 |
C4 |
O4 |
C5 |
244.4 |
247.1 |
C3 |
C4 |
O4 |
H4 |
120.2 |
123.5 |
C5 |
C4 |
O4 |
H4 |
235.8 |
236.4 |
O4 |
C4 |
C5 |
O5 |
221.0 |
220.3 |
O4 |
C4 |
C5 |
C6 |
100.2 |
100.7 |
O4 |
C4 |
C5 |
H5 |
342.5 |
339.9 |
C2 |
O5 |
C5 |
C4 |
351.6 |
358.3 |
C5 |
C4 |
C3 |
H3 |
266.9 |
276.1 |
C3 |
C4 |
C5 |
O4 |
123.5 |
118.3 |
C3 |
C4 |
C5 |
H4 |
239.9 |
241.7 |
O4 |
C4 |
C5 |
H4 |
116.4 |
123.5 |
C5 |
C4 |
O4 |
HO4 |
295.6 |
174.4 |
O5 |
C5 |
C4 |
C6 |
120.8 |
119.6 |
O5 |
C5 |
C4 |
H5 |
238.5 |
240.4 |
C6 |
C5 |
C4 |
H5 |
117.8 |
120.8 |
C4 |
C5 |
C6 |
O6 |
247.7 |
180.0 |
C4 |
C5 |
C6 |
H61 |
122.4 |
300.0 |
C4 |
C5 |
C6 |
H62 |
13.0 |
60.0 |
H4 |
C4 |
C3 |
H3 |
142.8 |
157.9 |
C3 |
C4 |
H4 |
O4 |
236.0 |
236.5 |
C3 |
C4 |
H4 |
C5 |
116.1 |
112.9 |
O4 |
C4 |
H4 |
C5 |
240.1 |
236.3 |
H4 |
C4 |
O4 |
HO4 |
59.8 |
297.9 |
H4 |
C4 |
C5 |
O5 |
104.6 |
96.9 |
H4 |
C4 |
C5 |
C6 |
343.8 |
337.3 |
H4 |
C4 |
C5 |
H5 |
226.1 |
216.4 |
HO4 |
O4 |
C4 |
C5 |
295.6 |
174.4 |
HO4 |
O4 |
C4 |
H4 |
59.8 |
297.9 |
C5 |
O5 |
C2 |
H2 |
269.5 |
265.5 |
O5 |
C5 |
C4 |
H4 |
104.6 |
96.9 |
C4 |
C5 |
O5 |
C6 |
237.9 |
240.5 |
C4 |
C5 |
O5 |
H5 |
120.1 |
119.6 |
C6 |
C5 |
O5 |
H5 |
242.2 |
239.1 |
O5 |
C5 |
C6 |
O6 |
129.2 |
61.8 |
O5 |
C5 |
C6 |
H61 |
4.0 |
181.9 |
O5 |
C5 |
C6 |
H62 |
254.5 |
301.8 |
C6 |
C5 |
C4 |
H4 |
343.8 |
337.3 |
C4 |
C5 |
C6 |
O5 |
118.5 |
118.2 |
C4 |
C5 |
C6 |
H5 |
239.9 |
239.1 |
O5 |
C5 |
C6 |
H5 |
121.5 |
120.9 |
O6 |
C6 |
C5 |
H61 |
125.2 |
240.0 |
O6 |
C6 |
C5 |
H62 |
234.7 |
120.0 |
C5 |
C6 |
O6 |
P2 |
138.6 |
180.0 |
H61 |
C6 |
C5 |
H62 |
109.5 |
240.0 |
H5 |
C5 |
C4 |
H4 |
226.1 |
216.4 |
C4 |
C5 |
H5 |
O5 |
242.0 |
241.8 |
C4 |
C5 |
H5 |
C6 |
121.6 |
120.9 |
O5 |
C5 |
H5 |
C6 |
239.7 |
239.0 |
H5 |
C5 |
C6 |
O6 |
7.7 |
300.9 |
H5 |
C5 |
C6 |
H61 |
242.5 |
60.9 |
H5 |
C5 |
C6 |
H62 |
133.0 |
180.9 |
O6 |
C6 |
C5 |
H5 |
7.7 |
300.9 |
C5 |
C6 |
O6 |
H61 |
234.8 |
120.1 |
C5 |
C6 |
O6 |
H62 |
125.3 |
240.0 |
H61 |
C6 |
O6 |
H62 |
250.5 |
119.9 |
C6 |
O6 |
P2 |
O4P |
42.0 |
60.1 |
C6 |
O6 |
P2 |
O5P |
280.8 |
180.0 |
C6 |
O6 |
P2 |
O6P |
162.7 |
300.1 |
H61 |
C6 |
C5 |
H5 |
242.5 |
60.9 |
C5 |
C6 |
H61 |
O6 |
122.6 |
240.0 |
C5 |
C6 |
H61 |
H62 |
241.3 |
120.0 |
O6 |
C6 |
H61 |
H62 |
118.7 |
240.0 |
H61 |
C6 |
O6 |
P2 |
263.8 |
59.9 |
H62 |
C6 |
C5 |
H5 |
133.0 |
180.9 |
C5 |
C6 |
H62 |
O6 |
237.4 |
120.0 |
C5 |
C6 |
H62 |
H61 |
118.7 |
240.0 |
O6 |
C6 |
H62 |
H61 |
241.3 |
120.0 |
H62 |
C6 |
O6 |
P2 |
13.3 |
299.9 |
P2 |
O6 |
C6 |
H61 |
263.8 |
59.9 |
P2 |
O6 |
C6 |
H62 |
13.3 |
299.9 |
O4P |
P2 |
O6 |
O5P |
121.2 |
240.1 |
O4P |
P2 |
O6 |
O6P |
239.3 |
120.0 |
O5P |
P2 |
O6 |
O6P |
118.1 |
239.9 |
O6 |
P2 |
O5P |
HOP5 |
180.0 |
180.0 |
O6 |
P2 |
O6P |
HOP6 |
180.0 |
300.0 |
O6 |
P2 |
O4P |
O5P |
241.4 |
119.9 |
O6 |
P2 |
O4P |
O6P |
112.4 |
240.0 |
O5P |
P2 |
O4P |
O6P |
231.1 |
120.0 |
O4P |
P2 |
O5P |
HOP5 |
61.7 |
299.9 |
O4P |
P2 |
O6P |
HOP6 |
295.7 |
180.0 |
O6 |
P2 |
O5P |
O4P |
118.3 |
240.1 |
O6 |
P2 |
O5P |
O6P |
248.6 |
120.1 |
O4P |
P2 |
O5P |
O6P |
130.2 |
240.0 |
O5P |
P2 |
O6P |
HOP6 |
64.7 |
60.1 |
O6 |
P2 |
O6P |
O4P |
244.3 |
120.0 |
O6 |
P2 |
O6P |
O5P |
115.3 |
239.9 |
O4P |
P2 |
O6P |
O5P |
231.0 |
119.9 |
O6P |
P2 |
O5P |
HOP5 |
291.5 |
59.9 |
HOP5 |
O5P |
P2 |
O6P |
291.5 |
59.9 |