PDB Chemical Component AHD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AHD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.601	1.530
C2	C7	1.624	1.530
C2	H21	1.115	1.090
C2	H22	1.115	1.090
C3	N4	1.524	1.470
C3	H31	1.115	1.089
C3	H32	1.115	1.090
C7	C8	1.629	1.530
C7	H71	1.115	1.090
C7	H72	1.115	1.090
C8	P9	1.832	1.823
C8	P14	1.816	1.823
C8	O13	1.380	1.430
O12	P9	1.466	1.566
P9	O10	1.429	1.567
P9	O11	1.532	1.567
P14	O15	1.537	1.567
P14	O16	1.641	1.566
P14	O17	1.523	1.567
O13	H13	0.950	0.967
N4	HN41	1.020	1.009
N4	HN42	1.020	1.008

Bond Angles for AHD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C7	125.3	109.5
C3	C2	H21	106.7	109.4
C3	C2	H22	106.6	109.5
C2	C3	N4	106.3	109.5
C2	C3	H31	113.4	109.5
C2	C3	H32	113.4	109.5
C7	C2	H21	106.6	109.5
C7	C2	H22	106.6	109.5
C2	C7	C8	132.9	109.5
C2	C7	H71	104.1	109.4
C2	C7	H72	104.1	109.4
H21	C2	H22	102.9	109.4
N4	C3	H31	113.4	109.4
N4	C3	H32	113.4	109.4
C3	N4	HN41	113.4	106.7
C3	N4	HN42	106.3	106.7
H31	C3	H32	97.1	109.6
C8	C7	H71	104.1	109.5
C8	C7	H72	104.1	109.5
C7	C8	P9	102.6	109.5
C7	C8	P14	102.1	109.5
C7	C8	O13	86.2	109.5
H71	C7	H72	104.7	109.5
P9	C8	P14	108.2	109.5
P9	C8	O13	126.4	109.4
C8	P9	O12	107.1	109.5
C8	P9	O10	106.6	109.5
C8	P9	O11	93.7	109.5
P14	C8	O13	121.6	109.5
C8	P14	O15	112.5	109.5
C8	P14	O16	86.1	109.5
C8	P14	O17	104.2	109.5
C8	O13	H13	86.2	106.8
O12	P9	O10	104.5	109.5
O12	P9	O11	119.5	109.4
O10	P9	O11	123.1	109.5
O15	P14	O16	122.9	109.5
O15	P14	O17	108.7	109.5
O16	P14	O17	118.4	109.4
HN41	N4	HN42	113.4	106.7

Torsion Angles for AHD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C7	C2	C3	H21	125.3	240.0
C7	C2	C3	H22	234.7	120.0
C3	C2	C7	C8	310.6	180.0
C3	C2	C7	H71	185.3	300.0
C3	C2	C7	H72	75.8	59.9
H21	C2	C3	H22	109.5	240.0
N4	C3	C2	H31	125.3	119.9
N4	C3	C2	H32	234.8	240.0
C2	C3	N4	HN41	54.7	66.2
C2	C3	N4	HN42	180.0	180.0
H31	C3	C2	H32	109.5	120.1
C3	C2	C7	H21	234.7	120.0
C3	C2	C7	H22	125.3	240.0
C7	C2	C3	N4	199.5	180.0
C7	C2	C3	H31	74.2	60.1
C7	C2	C3	H32	324.8	300.0
H21	C2	C7	H22	250.6	120.0
C8	C7	C2	H71	125.3	240.0
C8	C7	C2	H72	234.8	120.0
C2	C7	C8	P9	200.7	180.0
C2	C7	C8	P14	312.7	300.0
C2	C7	C8	O13	74.2	60.0
H71	C7	C2	H72	109.5	240.1
C3	C2	H21	C7	135.9	240.0
C3	C2	H21	H22	247.9	120.0
H21	C2	C3	N4	74.3	300.0
H21	C2	C3	H31	309.0	180.1
H21	C2	C3	H32	199.5	60.0
C7	C2	H21	H22	112.0	240.0
H21	C2	C7	C8	75.9	60.0
H21	C2	C7	H71	310.6	180.0
H21	C2	C7	H72	201.1	300.0
C3	C2	H22	C7	224.1	120.0
C3	C2	H22	H21	112.1	240.0
H22	C2	C3	N4	324.8	60.0
H22	C2	C3	H31	199.5	300.1
H22	C2	C3	H32	90.0	179.9
C7	C2	H22	H21	248.0	120.0
H22	C2	C7	C8	185.3	300.0
H22	C2	C7	H71	60.1	60.0
H22	C2	C7	H72	310.6	180.0
N4	C3	C2	C7	199.5	180.0
N4	C3	C2	H21	74.3	300.0
N4	C3	C2	H22	324.8	60.0
C2	C3	N4	H31	234.7	240.1
C2	C3	N4	H32	125.3	120.0
H31	C3	N4	H32	250.5	239.9
HN41	N4	C3	HN42	234.7	246.2
H31	C3	C2	C7	74.2	60.1
H31	C3	C2	H21	309.0	180.1
H31	C3	C2	H22	199.5	300.1
C2	C3	H31	N4	121.4	119.9
C2	C3	H31	H32	240.7	239.9
N4	C3	H31	H32	119.3	120.0
H31	C3	N4	HN41	180.0	186.2
H31	C3	N4	HN42	305.3	299.9
H32	C3	C2	C7	324.8	300.0
H32	C3	C2	H21	199.5	60.0
H32	C3	C2	H22	90.0	179.9
C2	C3	H32	N4	238.6	240.0
C2	C3	H32	H31	119.3	120.1
N4	C3	H32	H31	240.7	240.0
H32	C3	N4	HN41	289.5	306.2
H32	C3	N4	HN42	54.7	60.0
C8	C7	C2	H21	75.9	60.0
C8	C7	C2	H22	185.3	300.0
C2	C7	C8	H71	234.7	120.0
C2	C7	C8	H72	125.2	240.0
H71	C7	C8	H72	250.5	120.0
P9	C8	C7	P14	248.0	240.0
P9	C8	C7	O13	126.5	120.0
C7	C8	P9	O12	56.9	295.0
C7	C8	P9	O10	305.6	175.0
C7	C8	P9	O11	179.3	55.0
P14	C8	C7	O13	238.5	240.0
C7	C8	P14	O15	304.6	300.0
C7	C8	P14	O16	180.4	180.0
C7	C8	P14	O17	62.1	60.0
C7	C8	O13	H13	180.0	60.0
H71	C7	C2	H21	310.6	180.0
H71	C7	C2	H22	60.1	60.0
C2	C7	H71	C8	141.9	240.0
C2	C7	H71	H72	251.0	119.9
C8	C7	H71	H72	109.0	239.9
H71	C7	C8	P9	326.0	60.0
H71	C7	C8	P14	78.0	180.0
H71	C7	C8	O13	199.4	300.0
H72	C7	C2	H21	201.1	300.0
H72	C7	C2	H22	310.6	180.0
C2	C7	H72	C8	218.1	120.0
C2	C7	H72	H71	109.0	240.1
C8	C7	H72	H71	250.9	120.1
H72	C7	C8	P9	75.4	300.0
H72	C7	C8	P14	187.5	60.0
H72	C7	C8	O13	308.9	180.0
P9	C8	C7	H71	326.0	60.0
P9	C8	C7	H72	75.4	300.0
C7	C8	P9	P14	107.4	120.0
C7	C8	P9	O13	265.4	240.0
P14	C8	P9	O13	158.0	120.0
P9	C8	P14	O15	52.3	60.0
P9	C8	P14	O16	288.1	300.0
P9	C8	P14	O17	169.8	180.0
P9	C8	O13	H13	77.2	300.0
O12	P9	C8	O10	111.4	120.0
O12	P9	C8	O11	237.6	240.0
O10	P9	C8	O11	126.2	120.0
P14	C8	C7	H71	78.0	180.0
P14	C8	C7	H72	187.5	60.0
C7	C8	P14	P9	252.3	240.0
C7	C8	P14	O13	93.0	120.0
P9	C8	P14	O13	200.7	240.0
P14	C8	P9	O12	309.5	175.0
P14	C8	P9	O10	198.1	55.0
P14	C8	P9	O11	71.9	295.0
P14	C8	O13	H13	281.9	180.0
O15	P14	C8	O16	124.2	120.0
O15	P14	C8	O17	242.5	240.0
O16	P14	C8	O17	118.3	120.0
O13	C8	C7	H71	199.4	300.0
O13	C8	C7	H72	308.9	180.0
C7	C8	O13	P9	102.8	120.0
C7	C8	O13	P14	258.1	240.0
P9	C8	O13	P14	155.3	120.0
O13	C8	P9	O12	151.5	55.0
O13	C8	P9	O10	40.1	295.0
O13	C8	P9	O11	273.9	175.0
O13	C8	P14	O15	211.6	180.0
O13	C8	P14	O16	87.4	60.0
O13	C8	P14	O17	329.1	300.0
O12	P9	C8	P14	309.5	175.0
O12	P9	C8	O13	151.5	55.0
C8	P9	O12	O10	247.1	240.0
C8	P9	O12	O11	104.6	120.0
O10	P9	O12	O11	217.4	240.0
O10	P9	C8	P14	198.1	55.0
O10	P9	C8	O13	40.1	295.0
C8	P9	O10	O12	113.2	120.0
C8	P9	O10	O11	254.0	240.0
O12	P9	O10	O11	140.8	120.0
O11	P9	C8	P14	71.9	295.0
O11	P9	C8	O13	273.9	175.0
C8	P9	O11	O12	248.0	240.0
C8	P9	O11	O10	112.6	120.0
O12	P9	O11	O10	224.6	240.0
O15	P14	C8	O13	211.6	180.0
C8	P14	O15	O16	259.6	240.0
C8	P14	O15	O17	114.8	120.0
O16	P14	O15	O17	215.2	240.0
O16	P14	C8	O13	87.4	60.0
C8	P14	O16	O15	114.4	120.0
C8	P14	O16	O17	256.0	240.0
O15	P14	O16	O17	141.6	120.0
O17	P14	C8	O13	329.1	300.0
C8	P14	O17	O15	239.9	240.0
C8	P14	O17	O16	93.3	120.0
O15	P14	O17	O16	213.4	240.0
HN41	N4	C3	H31	180.0	186.2
HN41	N4	C3	H32	289.5	306.2
C3	N4	HN41	HN42	121.4	113.8
HN42	N4	C3	H31	305.3	299.9
HN42	N4	C3	H32	54.7	60.0
C3	N4	HN42	HN41	234.8	246.2