PDB Chemical Component AGS

Ideal Model

Chemical Description

Name PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Synonyms ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE
Formula C10 H16 N5 O12 P3 S
Formal charge 0
Molecular weight 523.247 g/mol
Component type NON-POLYMER

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 49
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy{[(S)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]adenosine
Systematic name (OpenEye OEToolkits) [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] bis(oxidanyl)phosphinothioyl hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N
InChI descriptor InChI=1S/C10H16N5O12P3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(25-10)1-24-28(18,19)26-29(20,21)27-30(22,23)31/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H2,11,12,13)(H2,22,23,31)/t4-,6-,7-,10-/m1/s1
InChIKey descriptor NLTUCYMLOPLUHL-KQYNXXCUSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-08
Release status REL
Replaces SAP,ATG
Model PDB code 1MMG
Processing site PDBJ