PDB Chemical Component AGP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AGP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.427	1.429
C1	C2	1.517	1.529
C1	H11	1.115	1.090
C1	H12	1.114	1.089
O1	HO1	0.949	0.966
C2	N2	1.419	1.468
C2	C3	1.517	1.530
C2	H2	1.115	1.090
N2	HN21	1.020	1.008
N2	HN22	1.021	1.009
C3	O3	1.432	1.429
C3	C4	1.526	1.529
C3	H3	1.115	1.090
O3	HO3	0.949	0.966
C4	O4	1.431	1.429
C4	C5	1.555	1.529
C4	H4	1.115	1.090
O4	HO4	0.949	0.967
C5	O5	1.402	1.429
C5	C6	1.508	1.529
C5	H5	1.115	1.090
O5	HO5	0.950	0.967
C6	O6	1.458	1.428
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	P	1.594	1.609
P	O1P	1.450	1.480
P	O2P	1.500	1.609
P	O3P	1.502	1.610
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967

Bond Angles for AGP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	111.6	109.5
O1	C1	H11	111.4	109.5
O1	C1	H12	111.4	109.5
C1	O1	HO1	111.7	106.9
C2	C1	H11	111.4	109.4
C2	C1	H12	111.4	109.5
C1	C2	N2	109.1	109.5
C1	C2	C3	111.4	109.5
C1	C2	H2	108.4	109.5
H11	C1	H12	99.0	109.5
N2	C2	C3	109.4	109.4
N2	C2	H2	110.4	109.5
C2	N2	HN21	109.1	106.7
C2	N2	HN22	112.3	106.7
C3	C2	H2	108.1	109.4
C2	C3	O3	110.0	109.5
C2	C3	C4	114.1	109.6
C2	C3	H3	104.6	109.5
HN21	N2	HN22	112.3	106.7
O3	C3	C4	105.3	109.5
O3	C3	H3	113.5	109.4
C3	O3	HO3	110.1	106.8
C4	C3	H3	109.4	109.5
C3	C4	O4	108.0	109.5
C3	C4	C5	109.9	109.5
C3	C4	H4	108.5	109.5
O4	C4	C5	104.0	109.5
O4	C4	H4	114.0	109.4
C4	O4	HO4	108.0	106.7
C5	C4	H4	112.2	109.5
C4	C5	O5	108.9	109.5
C4	C5	C6	109.8	109.5
C4	C5	H5	109.0	109.5
O5	C5	C6	107.7	109.5
O5	C5	H5	111.1	109.4
C5	O5	HO5	108.9	106.7
C6	C5	H5	110.3	109.5
C5	C6	O6	106.1	109.6
C5	C6	H61	113.5	109.5
C5	C6	H62	113.4	109.5
O6	C6	H61	113.5	109.5
O6	C6	H62	113.5	109.4
C6	O6	P	119.9	106.9
H61	C6	H62	97.0	109.4
O6	P	O1P	107.9	109.4
O6	P	O2P	111.5	109.5
O6	P	O3P	109.8	109.5
O1P	P	O2P	113.4	109.5
O1P	P	O3P	111.0	109.5
O2P	P	O3P	103.2	109.5
P	O2P	HOP2	111.4	106.8
P	O3P	HOP3	109.9	106.7

Torsion Angles for AGP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	H11	234.8	120.0
C2	C1	O1	H12	125.3	240.0
O1	C1	C2	N2	283.6	300.0
O1	C1	C2	C3	162.7	180.0
O1	C1	C2	H2	43.8	60.1
H11	C1	O1	H12	250.5	120.0
O1	C1	C2	H11	125.3	240.0
O1	C1	C2	H12	234.7	120.0
C2	C1	O1	HO1	180.0	179.9
H11	C1	C2	H12	109.5	240.0
N2	C2	C1	C3	120.9	120.0
N2	C2	C1	H2	239.7	239.9
C1	C2	N2	HN21	179.9	300.0
C1	C2	N2	HN22	54.8	53.8
C3	C2	C1	H2	118.8	119.9
C1	C2	C3	O3	299.6	60.0
C1	C2	C3	C4	57.7	180.0
C1	C2	C3	H3	177.3	300.1
O1	C1	H11	C2	234.6	120.0
O1	C1	H11	H12	117.3	240.0
H11	C1	O1	HO1	305.2	60.0
C2	C1	H11	H12	242.7	120.0
H11	C1	C2	N2	158.3	60.0
H11	C1	C2	C3	37.4	300.0
H11	C1	C2	H2	278.6	180.0
O1	C1	H12	C2	125.4	240.0
O1	C1	H12	H11	242.7	120.0
H12	C1	O1	HO1	54.7	300.0
C2	C1	H12	H11	117.3	240.0
H12	C1	C2	N2	48.9	180.0
H12	C1	C2	C3	287.9	60.0
H12	C1	C2	H2	169.1	300.0
HO1	O1	C1	C2	180.0	179.9
HO1	O1	C1	H11	305.2	60.0
HO1	O1	C1	H12	54.7	300.0
N2	C2	C1	H11	158.3	60.0
N2	C2	C1	H12	48.9	180.0
C1	C2	N2	C3	237.9	239.9
C1	C2	N2	H2	119.0	120.0
C3	C2	N2	H2	241.1	240.1
N2	C2	C3	O3	178.8	299.9
N2	C2	C3	C4	297.0	60.0
N2	C2	C3	H3	56.5	180.0
HN21	N2	C2	HN22	125.2	246.2
C3	C2	C1	H11	37.4	300.0
C3	C2	C1	H12	287.9	60.0
C1	C2	C3	N2	120.7	120.0
C1	C2	C3	H2	241.0	240.0
N2	C2	C3	H2	120.3	120.0
C3	C2	N2	HN21	302.1	60.0
C3	C2	N2	HN22	176.9	173.8
O3	C3	C2	C4	241.8	240.0
O3	C3	C2	H3	122.3	119.9
C2	C3	O3	HO3	180.0	60.1
C4	C3	C2	H3	240.4	240.0
C2	C3	C4	O4	286.4	300.1
C2	C3	C4	C5	173.5	180.0
C2	C3	C4	H4	50.4	60.0
H2	C2	C1	H11	278.6	180.0
H2	C2	C1	H12	169.1	300.0
C1	C2	H2	N2	240.6	239.9
C1	C2	H2	C3	120.9	120.0
N2	C2	H2	C3	240.3	240.1
H2	C2	N2	HN21	60.9	179.9
H2	C2	N2	HN22	295.8	293.7
H2	C2	C3	O3	58.5	180.0
H2	C2	C3	C4	176.7	300.0
H2	C2	C3	H3	296.2	60.1
HN21	N2	C2	C3	302.1	60.0
HN21	N2	C2	H2	60.9	179.9
C2	N2	HN21	HN22	234.8	113.8
HN22	N2	C2	C3	176.9	173.8
HN22	N2	C2	H2	295.8	293.7
C2	N2	HN22	HN21	123.4	246.2
O3	C3	C2	H2	58.5	180.0
C2	C3	O3	C4	123.5	120.1
C2	C3	O3	H3	243.2	240.0
C4	C3	O3	H3	119.7	119.9
O3	C3	C4	O4	47.3	60.1
O3	C3	C4	C5	294.3	300.0
O3	C3	C4	H4	171.3	180.0
C4	C3	C2	H2	176.7	300.0
C2	C3	C4	O3	239.2	240.0
C2	C3	C4	H3	116.8	120.1
O3	C3	C4	H3	237.6	240.1
C4	C3	O3	HO3	56.5	300.0
O4	C4	C3	C5	112.9	120.1
O4	C4	C3	H4	236.0	240.1
C3	C4	O4	HO4	180.0	300.0
C5	C4	C3	H4	123.1	120.0
C3	C4	C5	O5	289.8	300.0
C3	C4	C5	C6	172.1	180.0
C3	C4	C5	H5	51.2	60.0
H3	C3	C2	H2	296.2	60.1
C2	C3	H3	O3	120.0	119.9
C2	C3	H3	C4	237.3	239.9
O3	C3	H3	C4	117.4	119.9
H3	C3	O3	HO3	296.8	180.0
H3	C3	C4	O4	169.7	180.0
H3	C3	C4	C5	56.8	59.9
H3	C3	C4	H4	293.7	299.9
HO3	O3	C3	C4	56.5	300.0
HO3	O3	C3	H3	296.8	180.0
O4	C4	C3	H3	169.7	180.0
C3	C4	O4	C5	243.2	239.9
C3	C4	O4	H4	120.7	119.9
C5	C4	O4	H4	237.5	240.0
O4	C4	C5	O5	174.4	180.0
O4	C4	C5	C6	56.7	60.0
O4	C4	C5	H5	295.8	299.9
C5	C4	C3	H3	56.8	59.9
C3	C4	C5	O4	115.4	120.0
C3	C4	C5	H4	239.1	240.0
O4	C4	C5	H4	123.7	119.9
C5	C4	O4	HO4	296.8	60.1
O5	C5	C4	C6	117.7	120.0
O5	C5	C4	H5	238.6	240.0
C4	C5	O5	HO5	179.9	300.0
C6	C5	C4	H5	120.9	120.0
C4	C5	C6	O6	66.8	180.0
C4	C5	C6	H61	192.1	300.1
C4	C5	C6	H62	301.6	60.0
H4	C4	C3	H3	293.7	299.9
C3	C4	H4	O4	239.6	240.1
C3	C4	H4	C5	121.7	120.1
O4	C4	H4	C5	242.1	240.0
H4	C4	O4	HO4	59.3	180.0
H4	C4	C5	O5	50.7	60.0
H4	C4	C5	C6	293.0	300.0
H4	C4	C5	H5	172.1	180.0
HO4	O4	C4	C5	296.8	60.1
HO4	O4	C4	H4	59.3	180.0
O5	C5	C4	H4	50.7	60.0
C4	C5	O5	C6	241.0	240.0
C4	C5	O5	H5	120.1	120.0
C6	C5	O5	H5	239.1	240.0
O5	C5	C6	O6	308.4	60.0
O5	C5	C6	H61	73.7	180.0
O5	C5	C6	H62	183.1	300.0
C6	C5	C4	H4	293.0	300.0
C4	C5	C6	O5	118.4	120.0
C4	C5	C6	H5	239.8	240.0
O5	C5	C6	H5	121.4	120.0
C6	C5	O5	HO5	299.0	60.1
O6	C6	C5	H61	234.7	239.9
O6	C6	C5	H62	125.3	120.0
C5	C6	O6	P	191.9	180.0
H61	C6	C5	H62	250.5	240.1
H5	C5	C4	H4	172.1	180.0
C4	C5	H5	O5	240.0	240.0
C4	C5	H5	C6	120.6	120.1
O5	C5	H5	C6	240.7	240.0
H5	C5	O5	HO5	59.8	180.0
H5	C5	C6	O6	187.0	300.0
H5	C5	C6	H61	312.3	60.1
H5	C5	C6	H62	61.7	180.0
HO5	O5	C5	C6	299.0	60.1
HO5	O5	C5	H5	59.8	180.0
O6	C6	C5	H5	187.0	300.0
C5	C6	O6	H61	125.3	120.1
C5	C6	O6	H62	234.8	240.0
H61	C6	O6	H62	109.5	119.9
C6	O6	P	O1P	180.1	60.0
C6	O6	P	O2P	305.2	180.0
C6	O6	P	O3P	58.9	300.0
H61	C6	C5	H5	312.3	60.1
C5	C6	H61	O6	238.8	239.9
C5	C6	H61	H62	119.3	120.0
O6	C6	H61	H62	240.6	240.1
H61	C6	O6	P	66.6	59.9
H62	C6	C5	H5	61.7	180.0
C5	C6	H62	O6	121.2	120.1
C5	C6	H62	H61	240.6	240.0
O6	C6	H62	H61	119.4	119.9
H62	C6	O6	P	317.1	300.0
P	O6	C6	H61	66.6	59.9
P	O6	C6	H62	317.1	300.0
O1P	P	O6	O2P	234.8	240.0
O1P	P	O6	O3P	121.2	120.0
O2P	P	O6	O3P	246.3	240.0
O6	P	O2P	HOP2	180.0	180.0
O6	P	O3P	HOP3	180.0	300.0
O6	P	O1P	O2P	124.0	120.1
O6	P	O1P	O3P	239.6	240.1
O2P	P	O1P	O3P	115.6	120.0
O1P	P	O2P	HOP2	302.0	300.0
O1P	P	O3P	HOP3	60.7	180.0
O6	P	O2P	O1P	238.0	240.0
O6	P	O2P	O3P	117.8	120.0
O1P	P	O2P	O3P	239.8	240.0
O2P	P	O3P	HOP3	298.9	60.0
O6	P	O3P	O1P	119.3	119.9
O6	P	O3P	O2P	241.1	239.9
O1P	P	O3P	O2P	121.8	120.0
O3P	P	O2P	HOP2	62.2	60.0
HOP2	O2P	P	O3P	62.2	60.0