PDB Chemical Component AGM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AGM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.454 |
1.469 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.539 |
1.530 |
| CA |
C |
1.526 |
1.508 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.528 |
1.530 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.099 |
1.090 |
| CG |
CD |
1.536 |
1.530 |
| CG |
HG2 |
1.100 |
1.089 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
CE2 |
1.525 |
1.531 |
| CD |
NE1 |
1.461 |
1.465 |
| CD |
HD |
1.100 |
1.090 |
| CE2 |
HE21 |
1.100 |
1.090 |
| CE2 |
HE22 |
1.100 |
1.090 |
| CE2 |
HE23 |
1.100 |
1.090 |
| NE1 |
CZ |
1.331 |
1.368 |
| NE1 |
HE1 |
1.000 |
0.969 |
| CZ |
NH1 |
1.327 |
1.331 |
| CZ |
NH2 |
1.331 |
1.333 |
| NH1 |
HH11 |
0.999 |
0.970 |
| NH1 |
HH12 |
0.999 |
0.969 |
| NH2 |
HH21 |
1.000 |
0.970 |
| NH2 |
HH22 |
1.000 |
0.970 |
| C |
O |
1.232 |
1.208 |
| C |
OXT |
1.333 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for AGM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
CB |
110.3 |
109.5 |
| N |
CA |
C |
109.4 |
109.4 |
| N |
CA |
HA |
109.6 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
C |
111.3 |
109.5 |
| CB |
CA |
HA |
107.6 |
109.5 |
| CA |
CB |
CG |
115.5 |
109.5 |
| CA |
CB |
HB2 |
107.5 |
109.5 |
| CA |
CB |
HB3 |
106.1 |
109.5 |
| C |
CA |
HA |
108.6 |
109.5 |
| CA |
C |
O |
121.2 |
120.0 |
| CA |
C |
OXT |
115.3 |
120.0 |
| CG |
CB |
HB2 |
107.5 |
109.5 |
| CG |
CB |
HB3 |
106.2 |
109.5 |
| CB |
CG |
CD |
114.0 |
109.5 |
| CB |
CG |
HG2 |
108.0 |
109.5 |
| CB |
CG |
HG3 |
107.0 |
109.5 |
| HB2 |
CB |
HB3 |
114.3 |
109.4 |
| CD |
CG |
HG2 |
108.0 |
109.5 |
| CD |
CG |
HG3 |
107.0 |
109.5 |
| CG |
CD |
CE2 |
111.3 |
109.5 |
| CG |
CD |
NE1 |
111.0 |
109.5 |
| CG |
CD |
HD |
107.4 |
109.5 |
| HG2 |
CG |
HG3 |
113.1 |
109.4 |
| CE2 |
CD |
NE1 |
110.2 |
109.5 |
| CE2 |
CD |
HD |
108.2 |
109.4 |
| CD |
CE2 |
HE21 |
109.5 |
109.5 |
| CD |
CE2 |
HE22 |
109.5 |
109.4 |
| CD |
CE2 |
HE23 |
109.5 |
109.5 |
| NE1 |
CD |
HD |
108.5 |
109.5 |
| CD |
NE1 |
CZ |
122.6 |
120.0 |
| CD |
NE1 |
HE1 |
118.7 |
120.0 |
| HE21 |
CE2 |
HE22 |
109.5 |
109.5 |
| HE21 |
CE2 |
HE23 |
109.4 |
109.5 |
| HE22 |
CE2 |
HE23 |
109.5 |
109.5 |
| CZ |
NE1 |
HE1 |
118.7 |
120.0 |
| NE1 |
CZ |
NH1 |
119.7 |
120.1 |
| NE1 |
CZ |
NH2 |
120.6 |
120.0 |
| NH1 |
CZ |
NH2 |
119.7 |
120.0 |
| CZ |
NH1 |
HH11 |
110.6 |
120.0 |
| CZ |
NH1 |
HH12 |
124.7 |
120.1 |
| CZ |
NH2 |
HH21 |
110.6 |
120.0 |
| CZ |
NH2 |
HH22 |
124.7 |
120.0 |
| HH11 |
NH1 |
HH12 |
124.7 |
120.0 |
| HH21 |
NH2 |
HH22 |
124.7 |
120.0 |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for AGM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
237.3 |
240.0 |
| CB |
CA |
N |
HA |
118.3 |
120.1 |
| N |
CA |
CB |
CG |
44.4 |
295.0 |
| N |
CA |
CB |
HB2 |
164.4 |
55.0 |
| N |
CA |
CB |
HB3 |
287.1 |
175.0 |
| C |
CA |
N |
HA |
241.0 |
240.0 |
| N |
CA |
C |
O |
221.8 |
340.0 |
| N |
CA |
C |
OXT |
45.3 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
114.0 |
176.0 |
| H |
N |
CA |
C |
236.7 |
296.0 |
| H |
N |
CA |
HA |
355.7 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
234.0 |
300.1 |
| H2 |
N |
CA |
C |
356.7 |
60.0 |
| H2 |
N |
CA |
HA |
115.7 |
180.0 |
| CB |
CA |
N |
H |
114.0 |
176.0 |
| CB |
CA |
N |
H2 |
234.0 |
300.1 |
| N |
CA |
CB |
C |
121.6 |
120.0 |
| N |
CA |
CB |
HA |
240.5 |
239.9 |
| C |
CA |
CB |
HA |
118.9 |
120.0 |
| CB |
CA |
C |
O |
343.9 |
100.0 |
| CB |
CA |
C |
OXT |
167.4 |
280.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
117.3 |
120.0 |
| CA |
CB |
CG |
CD |
196.8 |
180.0 |
| CA |
CB |
CG |
HG2 |
316.8 |
300.0 |
| CA |
CB |
CG |
HG3 |
78.8 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
237.3 |
240.0 |
| C |
CA |
N |
H |
236.7 |
296.0 |
| C |
CA |
N |
H2 |
356.7 |
60.0 |
| N |
CA |
C |
CB |
237.9 |
240.0 |
| N |
CA |
C |
HA |
119.6 |
120.0 |
| CB |
CA |
C |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
CG |
282.8 |
175.0 |
| C |
CA |
CB |
HB2 |
42.8 |
295.0 |
| C |
CA |
CB |
HB3 |
165.5 |
55.0 |
| O |
C |
CA |
OXT |
176.5 |
180.0 |
| CA |
C |
OXT |
HXT |
176.5 |
180.0 |
| HA |
CA |
N |
H |
355.7 |
56.0 |
| HA |
CA |
N |
H2 |
115.7 |
180.0 |
| N |
CA |
HA |
CB |
120.0 |
120.1 |
| N |
CA |
HA |
C |
240.5 |
240.0 |
| CB |
CA |
HA |
C |
120.6 |
120.0 |
| HA |
CA |
CB |
CG |
163.9 |
55.0 |
| HA |
CA |
CB |
HB2 |
283.9 |
175.0 |
| HA |
CA |
CB |
HB3 |
46.6 |
295.0 |
| HA |
CA |
C |
O |
102.2 |
220.0 |
| HA |
CA |
C |
OXT |
285.7 |
40.0 |
| CG |
CB |
CA |
C |
282.8 |
175.0 |
| CG |
CB |
CA |
HA |
163.9 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
242.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
122.7 |
120.0 |
| CD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG3 |
118.0 |
120.0 |
| CB |
CG |
CD |
CE2 |
296.4 |
185.0 |
| CB |
CG |
CD |
NE1 |
173.2 |
65.0 |
| CB |
CG |
CD |
HD |
54.7 |
305.0 |
| HG2 |
CG |
CB |
HG3 |
238.0 |
240.0 |
| HB2 |
CB |
CA |
C |
42.8 |
295.0 |
| HB2 |
CB |
CA |
HA |
283.9 |
175.0 |
| CA |
CB |
HB2 |
CG |
235.1 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
117.5 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
242.4 |
240.0 |
| HB2 |
CB |
CG |
CD |
76.8 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
196.8 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
318.8 |
300.0 |
| HB3 |
CB |
CA |
C |
165.5 |
55.0 |
| HB3 |
CB |
CA |
HA |
46.6 |
295.0 |
| CA |
CB |
HB3 |
CG |
123.4 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
241.7 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.3 |
120.0 |
| HB3 |
CB |
CG |
CD |
314.1 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
74.1 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
196.1 |
180.0 |
| CD |
CG |
CB |
HB2 |
76.8 |
60.0 |
| CD |
CG |
CB |
HB3 |
314.1 |
300.0 |
| CB |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
242.0 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
122.0 |
120.0 |
| CE2 |
CD |
CG |
NE1 |
123.2 |
120.0 |
| CE2 |
CD |
CG |
HD |
241.7 |
240.0 |
| CG |
CD |
CE2 |
HE21 |
258.0 |
180.0 |
| CG |
CD |
CE2 |
HE22 |
18.0 |
300.0 |
| CG |
CD |
CE2 |
HE23 |
138.0 |
60.0 |
| NE1 |
CD |
CG |
HD |
118.5 |
120.0 |
| CG |
CD |
NE1 |
CZ |
281.3 |
205.0 |
| CG |
CD |
NE1 |
HE1 |
101.3 |
25.0 |
| HG2 |
CG |
CB |
HB2 |
196.8 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
74.1 |
60.0 |
| CB |
CG |
HG2 |
CD |
236.3 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
118.2 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
241.9 |
240.0 |
| HG2 |
CG |
CD |
CE2 |
176.4 |
65.0 |
| HG2 |
CG |
CD |
NE1 |
53.2 |
305.0 |
| HG2 |
CG |
CD |
HD |
294.7 |
185.0 |
| HG3 |
CG |
CB |
HB2 |
318.8 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
196.1 |
180.0 |
| CB |
CG |
HG3 |
CD |
122.5 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
241.3 |
240.0 |
| CD |
CG |
HG3 |
HG2 |
118.7 |
120.0 |
| HG3 |
CG |
CD |
CE2 |
54.4 |
305.0 |
| HG3 |
CG |
CD |
NE1 |
291.2 |
185.0 |
| HG3 |
CG |
CD |
HD |
172.7 |
65.0 |
| CE2 |
CD |
CG |
HG2 |
176.4 |
65.0 |
| CE2 |
CD |
CG |
HG3 |
54.4 |
305.0 |
| CG |
CD |
CE2 |
NE1 |
236.4 |
240.0 |
| CG |
CD |
CE2 |
HD |
117.8 |
120.0 |
| NE1 |
CD |
CE2 |
HD |
241.5 |
240.0 |
| CE2 |
CD |
NE1 |
CZ |
157.5 |
85.0 |
| CE2 |
CD |
NE1 |
HE1 |
337.5 |
265.0 |
| HE21 |
CE2 |
CD |
HE22 |
240.0 |
240.0 |
| HE21 |
CE2 |
CD |
HE23 |
120.0 |
120.0 |
| HE22 |
CE2 |
CD |
HE23 |
240.0 |
240.0 |
| NE1 |
CD |
CG |
HG2 |
53.2 |
305.0 |
| NE1 |
CD |
CG |
HG3 |
291.2 |
185.0 |
| CG |
CD |
NE1 |
CE2 |
123.8 |
120.0 |
| CG |
CD |
NE1 |
HD |
242.2 |
240.0 |
| CE2 |
CD |
NE1 |
HD |
118.3 |
120.0 |
| NE1 |
CD |
CE2 |
HE21 |
21.6 |
300.0 |
| NE1 |
CD |
CE2 |
HE22 |
141.6 |
60.0 |
| NE1 |
CD |
CE2 |
HE23 |
261.6 |
180.0 |
| CZ |
NE1 |
CD |
HE1 |
180.0 |
180.0 |
| CD |
NE1 |
CZ |
NH1 |
180.7 |
0.0 |
| CD |
NE1 |
CZ |
NH2 |
1.3 |
180.0 |
| HD |
CD |
CG |
HG2 |
294.7 |
185.0 |
| HD |
CD |
CG |
HG3 |
172.7 |
65.0 |
| CG |
CD |
HD |
CE2 |
239.7 |
240.0 |
| CG |
CD |
HD |
NE1 |
120.1 |
120.0 |
| CE2 |
CD |
HD |
NE1 |
240.4 |
240.0 |
| HD |
CD |
CE2 |
HE21 |
140.1 |
60.0 |
| HD |
CD |
CE2 |
HE22 |
260.1 |
180.0 |
| HD |
CD |
CE2 |
HE23 |
20.2 |
300.0 |
| HD |
CD |
NE1 |
CZ |
39.2 |
325.0 |
| HD |
CD |
NE1 |
HE1 |
219.2 |
145.0 |
| HE21 |
CE2 |
CD |
NE1 |
21.6 |
300.0 |
| HE21 |
CE2 |
CD |
HD |
140.1 |
60.0 |
| CD |
CE2 |
HE21 |
HE22 |
120.0 |
119.9 |
| CD |
CE2 |
HE21 |
HE23 |
240.0 |
240.0 |
| HE22 |
CE2 |
HE21 |
HE23 |
120.0 |
120.0 |
| HE22 |
CE2 |
CD |
NE1 |
141.6 |
60.0 |
| HE22 |
CE2 |
CD |
HD |
260.1 |
180.0 |
| CD |
CE2 |
HE22 |
HE21 |
240.0 |
240.1 |
| CD |
CE2 |
HE22 |
HE23 |
120.0 |
120.0 |
| HE21 |
CE2 |
HE22 |
HE23 |
240.1 |
239.9 |
| HE23 |
CE2 |
CD |
NE1 |
261.6 |
180.0 |
| HE23 |
CE2 |
CD |
HD |
20.2 |
300.0 |
| CD |
CE2 |
HE23 |
HE21 |
120.0 |
120.0 |
| CD |
CE2 |
HE23 |
HE22 |
240.0 |
240.0 |
| HE21 |
CE2 |
HE23 |
HE22 |
120.0 |
120.0 |
| CZ |
NE1 |
CD |
HD |
39.2 |
325.0 |
| CD |
NE1 |
CZ |
HE1 |
180.0 |
180.0 |
| NH1 |
CZ |
NE1 |
NH2 |
179.4 |
180.0 |
| NE1 |
CZ |
NH1 |
HH11 |
180.0 |
0.0 |
| NE1 |
CZ |
NH1 |
HH12 |
360.0 |
180.0 |
| NE1 |
CZ |
NH2 |
HH21 |
359.7 |
0.0 |
| NE1 |
CZ |
NH2 |
HH22 |
179.7 |
180.0 |
| HE1 |
NE1 |
CD |
HD |
219.2 |
145.0 |
| CD |
NE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
NE1 |
CZ |
NH1 |
0.7 |
180.0 |
| HE1 |
NE1 |
CZ |
NH2 |
181.3 |
359.9 |
| NH1 |
CZ |
NE1 |
HE1 |
0.7 |
180.0 |
| NE1 |
CZ |
NH1 |
NH2 |
180.6 |
180.0 |
| NH1 |
CZ |
NH2 |
HH21 |
180.3 |
180.0 |
| NH1 |
CZ |
NH2 |
HH22 |
0.3 |
360.0 |
| HH11 |
NH1 |
CZ |
HH12 |
180.0 |
180.0 |
| NH2 |
CZ |
NE1 |
HE1 |
181.3 |
359.9 |
| NE1 |
CZ |
NH2 |
NH1 |
179.4 |
180.0 |
| NH2 |
CZ |
NH1 |
HH11 |
359.3 |
180.0 |
| NH2 |
CZ |
NH1 |
HH12 |
179.4 |
360.0 |
| HH21 |
NH2 |
CZ |
HH22 |
180.0 |
180.1 |
| HH11 |
NH1 |
CZ |
NH2 |
359.3 |
180.0 |
| CZ |
NH1 |
HH11 |
HH12 |
180.0 |
180.0 |
| HH12 |
NH1 |
CZ |
NH2 |
179.4 |
360.0 |
| CZ |
NH1 |
HH12 |
HH11 |
180.0 |
180.0 |
| CZ |
NH2 |
HH21 |
HH22 |
180.0 |
179.9 |
| CZ |
NH2 |
HH22 |
HH21 |
180.0 |
180.1 |
| O |
C |
CA |
HA |
102.2 |
220.0 |
| CA |
C |
O |
OXT |
183.8 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
HA |
285.7 |
40.0 |
| CA |
C |
OXT |
O |
176.4 |
180.0 |