PDB Chemical Component AGL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AGL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.558	1.531
C1	O1	1.408	1.428
C1	O5	1.420	1.426
C1	H1	1.116	1.090
C2	C3	1.545	1.531
C2	O2	1.412	1.429
C2	H2	1.115	1.090
C3	C4	1.548	1.532
C3	O3	1.410	1.429
C3	H3	1.114	1.090
C4	C5	1.553	1.529
C4	N4	1.483	1.468
C4	H4	1.115	1.090
C5	C6	1.534	1.529
C5	O5	1.433	1.426
C5	H5	1.115	1.090
C6	H61	1.116	1.091
C6	H62	1.114	1.089
C6	H63	1.115	1.090
O1	HO1	0.951	0.967
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
N4	HN41	1.020	1.009
N4	HN42	1.019	1.009

Bond Angles for AGL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	110.8	109.4
C2	C1	O5	113.5	109.8
C2	C1	H1	105.2	109.4
C1	C2	C3	112.9	109.0
C1	C2	O2	108.5	109.5
C1	C2	H2	108.0	109.5
O1	C1	O5	108.0	109.4
O1	C1	H1	111.0	109.4
C1	O1	HO1	110.8	106.8
O5	C1	H1	108.3	109.4
C1	O5	C5	115.3	107.6
C3	C2	O2	110.0	109.7
C3	C2	H2	106.5	109.6
C2	C3	C4	108.7	108.7
C2	C3	O3	108.3	109.6
C2	C3	H3	110.6	109.6
O2	C2	H2	111.1	109.6
C2	O2	HO2	108.5	106.8
C4	C3	O3	109.4	109.7
C4	C3	H3	109.7	109.6
C3	C4	C5	107.4	109.1
C3	C4	N4	110.7	109.6
C3	C4	H4	110.0	109.5
O3	C3	H3	110.1	109.5
C3	O3	HO3	108.3	106.8
C5	C4	N4	109.4	109.5
C5	C4	H4	111.2	109.6
C4	C5	C6	110.5	109.5
C4	C5	O5	108.8	109.8
C4	C5	H5	109.2	109.4
N4	C4	H4	108.0	109.5
C4	N4	HN41	110.7	106.7
C4	N4	HN42	111.7	106.7
C6	C5	O5	109.3	109.5
C6	C5	H5	108.7	109.4
C5	C6	H61	110.5	109.5
C5	C6	H62	111.8	109.5
C5	C6	H63	111.8	109.4
O5	C5	H5	110.4	109.3
H61	C6	H62	111.8	109.5
H61	C6	H63	111.8	109.4
H62	C6	H63	98.6	109.4
HN41	N4	HN42	111.8	106.7

Torsion Angles for AGL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	238.3	239.9
O1	C1	C2	H1	120.1	119.9
C2	C1	O1	HO1	180.0	180.3
O5	C1	C2	H1	241.8	240.0
C2	C1	O5	C5	309.7	292.4
C3	C2	C1	O2	237.9	240.1
C3	C2	C1	H2	117.4	119.8
C1	C2	C3	C4	311.0	306.2
C1	C2	C3	O3	192.3	186.3
C1	C2	C3	H3	71.5	66.1
O2	C2	C1	H2	239.6	239.8
C1	C2	O2	HO2	180.0	60.0
C2	C1	O1	O5	124.9	120.3
C2	C1	O1	H1	243.4	240.1
O1	C1	C2	C3	281.7	301.2
O1	C1	C2	O2	43.9	61.1
O1	C1	C2	H2	164.3	181.4
O5	C1	O1	H1	118.5	119.8
O1	C1	O5	C5	73.0	52.5
C2	C1	O5	O1	236.7	239.9
C2	C1	O5	H1	116.4	120.1
O5	C1	C2	C3	43.5	61.3
O5	C1	C2	O2	165.6	181.2
O5	C1	C2	H2	286.0	301.4
O1	C1	O5	H1	239.7	240.1
O5	C1	O1	HO1	55.1	60.0
C4	C5	O5	C1	61.5	67.5
C6	C5	O5	C1	182.3	187.7
C1	O5	C5	H5	301.7	307.5
C2	C1	H1	O1	120.0	119.9
C2	C1	H1	O5	238.3	239.7
H1	C1	C2	C3	161.7	181.3
H1	C1	C2	O2	283.8	301.2
H1	C1	C2	H2	44.3	61.5
O1	C1	H1	O5	118.4	119.8
H1	C1	O1	HO1	296.6	300.2
H1	C1	O5	C5	193.2	172.4
C3	C2	C1	O1	281.7	301.2
C3	C2	C1	O5	43.5	61.3
C3	C2	C1	H1	161.7	181.3
C1	C2	C3	O2	121.3	119.9
C1	C2	C3	H2	241.7	240.2
O2	C2	C3	H2	120.4	120.3
C3	C2	O2	HO2	303.9	179.6
C4	C3	C2	O3	118.8	119.9
C4	C3	C2	H3	239.5	240.2
C2	C3	C4	C5	59.1	53.8
C2	C3	C4	N4	178.5	173.7
C2	C3	C4	H4	297.9	293.9
O3	C3	C2	H3	120.7	120.2
C2	C3	O3	HO3	180.0	300.1
O2	C2	C1	O1	43.9	61.1
O2	C2	C1	O5	165.6	181.2
O2	C2	C1	H1	283.8	301.2
C1	C2	O2	C3	236.1	240.5
C1	C2	O2	H2	118.5	120.1
C3	C2	O2	H2	242.4	239.7
O2	C2	C3	C4	189.7	186.4
O2	C2	C3	O3	71.0	66.4
O2	C2	C3	H3	310.2	306.2
H2	C2	C1	O1	164.3	181.4
H2	C2	C1	O5	286.0	301.4
H2	C2	C1	H1	44.3	61.5
C1	C2	H2	C3	121.5	119.5
C1	C2	H2	O2	241.2	239.8
C3	C2	H2	O2	119.7	120.4
H2	C2	C3	C4	69.3	66.0
H2	C2	C3	O3	310.6	306.1
H2	C2	C3	H3	189.8	185.9
H2	C2	O2	HO2	61.5	299.9
C4	C3	C2	O2	189.7	186.4
C4	C3	C2	H2	69.3	66.0
C2	C3	C4	O3	241.9	240.1
C2	C3	C4	H3	121.1	119.8
O3	C3	C4	H3	239.2	239.7
C4	C3	O3	HO3	61.6	180.8
C5	C4	C3	N4	240.6	240.1
C5	C4	C3	H4	121.2	119.9
C3	C4	C5	C6	175.0	178.6
C3	C4	C5	O5	295.0	298.8
C3	C4	C5	H5	55.5	58.7
N4	C4	C3	H4	240.7	239.8
C3	C4	N4	HN41	180.0	180.0
C3	C4	N4	HN42	54.7	293.8
O3	C3	C2	O2	71.0	66.4
O3	C3	C2	H2	310.6	306.1
C2	C3	O3	C4	118.4	119.3
C2	C3	O3	H3	238.9	239.7
C4	C3	O3	H3	120.6	120.4
O3	C3	C4	C5	177.2	173.7
O3	C3	C4	N4	296.7	293.6
O3	C3	C4	H4	56.0	53.8
H3	C3	C2	O2	310.2	306.2
H3	C3	C2	H2	189.8	185.9
C2	C3	H3	C4	240.1	240.8
C2	C3	H3	O3	119.7	120.3
C4	C3	H3	O3	239.6	239.5
H3	C3	C4	C5	298.1	294.0
H3	C3	C4	N4	57.5	53.9
H3	C3	C4	H4	176.8	174.1
H3	C3	O3	HO3	301.1	60.4
C1	O5	C5	C4	61.5	67.5
C5	C4	C3	O3	177.2	173.7
C5	C4	C3	H3	298.1	294.0
C3	C4	C5	N4	120.2	119.9
C3	C4	C5	H4	239.5	240.1
N4	C4	C5	H4	119.3	120.2
C5	C4	N4	HN41	298.2	299.6
C5	C4	N4	HN42	172.9	53.4
C6	C5	C4	O5	240.0	239.8
C6	C5	C4	H5	119.5	119.9
C4	C5	C6	H61	180.0	180.1
C4	C5	C6	H62	305.2	300.2
C4	C5	C6	H63	54.8	60.2
O5	C5	C4	H5	239.5	240.0
N4	C4	C3	O3	296.7	293.6
N4	C4	C3	H3	57.5	53.9
C3	C4	N4	C5	241.8	240.4
C3	C4	N4	H4	120.5	120.2
C5	C4	N4	H4	238.7	239.8
N4	C4	C5	C6	54.8	58.6
N4	C4	C5	O5	174.8	178.8
N4	C4	C5	H5	295.3	298.8
HN41	N4	C4	HN42	125.4	246.2
H4	C4	C3	O3	56.0	53.8
H4	C4	C3	H3	176.8	174.1
C3	C4	H4	C5	118.9	119.6
C3	C4	H4	N4	239.1	239.8
C5	C4	H4	N4	120.1	120.2
H4	C4	C5	C6	295.5	298.5
H4	C4	C5	O5	55.4	58.7
H4	C4	C5	H5	176.0	178.6
H4	C4	N4	HN41	59.5	59.8
H4	C4	N4	HN42	294.1	173.5
C1	O5	C5	C6	182.3	187.7
C6	C5	C4	N4	54.8	58.6
C6	C5	C4	H4	295.5	298.5
C4	C5	C6	O5	119.7	120.4
C4	C5	C6	H5	240.2	240.1
O5	C5	C6	H5	120.5	119.8
H61	C6	C5	H62	234.8	240.0
H61	C6	C5	H63	125.2	120.0
H62	C6	C5	H63	250.5	240.0
C5	O5	C1	H1	193.2	172.4
O5	C5	C4	N4	174.8	178.8
O5	C5	C4	H4	55.4	58.7
C4	C5	O5	C6	239.2	239.8
C4	C5	O5	H5	119.8	120.0
C6	C5	O5	H5	240.6	240.2
O5	C5	C6	H61	60.3	59.8
O5	C5	C6	H62	185.6	179.8
O5	C5	C6	H63	295.1	299.8
H5	C5	C4	N4	295.3	298.8
H5	C5	C4	H4	176.0	178.6
C4	C5	H5	C6	120.7	119.9
C4	C5	H5	O5	240.5	239.8
C6	C5	H5	O5	119.8	119.9
H5	C5	C6	H61	299.8	300.0
H5	C5	C6	H62	65.1	60.1
H5	C5	C6	H63	174.6	180.0
H61	C6	C5	O5	60.3	59.8
H61	C6	C5	H5	299.8	300.0
C5	C6	H61	H62	125.2	120.1
C5	C6	H61	H63	234.8	240.0
H62	C6	H61	H63	109.5	119.9
H62	C6	C5	O5	185.6	179.8
H62	C6	C5	H5	65.1	60.1
C5	C6	H62	H61	235.5	239.9
C5	C6	H62	H63	117.7	120.0
H61	C6	H62	H63	242.3	240.1
H63	C6	C5	O5	295.1	299.8
H63	C6	C5	H5	174.6	180.0
C5	C6	H63	H61	124.5	120.0
C5	C6	H63	H62	242.3	239.9
H61	C6	H63	H62	117.7	120.0
HO1	O1	C1	O5	55.1	60.0
HO1	O1	C1	H1	296.6	300.2
HO2	O2	C2	H2	61.5	299.9
HO3	O3	C3	H3	301.1	60.4
HN41	N4	C4	H4	59.5	59.8
C4	N4	HN41	HN42	234.7	113.8
HN42	N4	C4	H4	294.1	173.5
C4	N4	HN42	HN41	124.7	246.2