PDB Chemical Component AG5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AG5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O14 C1 1.251 1.216
C1 N15 1.370 1.349
C1 C6 1.522 1.474
N15 C16 1.498 1.465
C16 C17 1.535 1.530
C17 C18 1.539 1.507
C18 C24 1.340 1.382
C18 C28 1.363 1.382
C24 C25 1.332 1.382
C25 C26 1.354 1.382
C26 C27 1.366 1.383
C27 C28 1.395 1.382
C6 C7 1.392 1.399
C6 C5 1.398 1.406
C7 C2 1.365 1.383
C5 N4 1.303 1.325
C5 S10 1.783 1.762
N4 C3 1.326 1.318
C3 C2 1.379 1.384
C2 S8 1.780 1.762
S8 O11 1.453 1.421
S8 O12 1.438 1.420
S8 N9 1.701 1.656
S10 C13 1.738 1.762
C13 C19 1.400 1.389
C13 C23 1.407 1.390
C19 C20 1.385 1.381
C20 C21 1.401 1.383
C21 C22 1.401 1.383
C22 C23 1.402 1.381
N15 HN15 1.000 0.970
C16 H16 1.100 1.090
C16 H16A 1.100 1.091
C17 H17 1.100 1.090
C17 H17A 1.100 1.091
C24 H24 1.080 1.080
C25 H25 1.081 1.080
C26 H26 1.080 1.080
C27 H27 1.080 1.080
C28 H28 1.080 1.080
C7 H7 1.080 1.080
C3 H3 1.080 1.080
N9 HN9 1.000 0.970
N9 HN9A 1.000 0.969
C19 H19 1.080 1.080
C20 H20 1.080 1.079
C21 H21 1.080 1.081
C22 H22 1.080 1.080
C23 H23 1.080 1.080

Bond Angles for AG5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O14 C1 N15 120.5 120.0
O14 C1 C6 119.7 120.0
N15 C1 C6 119.7 120.0
C1 N15 C16 124.1 120.0
C1 N15 HN15 118.0 119.9
C1 C6 C7 123.9 120.6
C1 C6 C5 115.6 120.6
N15 C16 C17 111.4 109.5
C16 N15 HN15 117.9 120.1
N15 C16 H16 108.8 109.5
N15 C16 H16A 108.4 109.5
C16 C17 C18 113.4 109.5
C17 C16 H16 108.8 109.5
C17 C16 H16A 108.4 109.4
C16 C17 H17 108.2 109.5
C16 C17 H17A 107.3 109.4
C17 C18 C24 118.2 120.0
C17 C18 C28 123.7 120.0
C18 C17 H17 108.2 109.5
C18 C17 H17A 107.3 109.5
C24 C18 C28 118.1 120.0
C18 C24 C25 120.5 120.0
C18 C24 H24 119.7 120.0
C18 C28 C27 122.2 120.0
C18 C28 H28 118.9 120.0
C24 C25 C26 123.1 120.0
C25 C24 H24 119.8 120.0
C24 C25 H25 118.5 120.0
C25 C26 C27 118.6 120.0
C26 C25 H25 118.4 120.0
C25 C26 H26 120.7 120.0
C26 C27 C28 117.5 120.0
C27 C26 H26 120.7 120.0
C26 C27 H27 121.3 120.0
C28 C27 H27 121.3 120.1
C27 C28 H28 118.9 120.0
C7 C6 C5 120.2 118.8
C6 C7 C2 116.2 118.4
C6 C7 H7 121.9 120.8
C6 C5 N4 120.9 120.3
C6 C5 S10 119.9 119.8
C7 C2 C3 120.7 119.5
C7 C2 S8 122.8 120.2
C2 C7 H7 121.9 120.8
N4 C5 S10 119.1 119.9
C5 N4 C3 120.1 121.8
C5 S10 C13 109.3 100.0
N4 C3 C2 121.5 121.2
N4 C3 H3 119.2 119.3
C3 C2 S8 116.4 120.2
C2 C3 H3 119.2 119.4
C2 S8 O11 103.4 106.4
C2 S8 O12 105.8 106.4
C2 S8 N9 107.9 107.2
O11 S8 O12 119.7 123.2
O11 S8 N9 109.6 106.4
O12 S8 N9 109.7 106.4
S8 N9 HN9 109.5 120.0
S8 N9 HN9A 109.5 120.0
S10 C13 C19 118.5 120.1
S10 C13 C23 118.6 120.1
C19 C13 C23 122.9 119.9
C13 C19 C20 118.8 119.9
C13 C19 H19 120.6 120.0
C13 C23 C22 117.1 119.9
C13 C23 H23 121.4 120.1
C19 C20 C21 119.8 120.0
C20 C19 H19 120.6 120.0
C19 C20 H20 120.1 120.0
C20 C21 C22 120.8 120.2
C21 C20 H20 120.1 120.0
C20 C21 H21 119.6 119.9
C21 C22 C23 120.5 120.1
C22 C21 H21 119.6 119.9
C21 C22 H22 119.7 119.9
C23 C22 H22 119.8 120.0
C22 C23 H23 121.4 120.0
H16 C16 H16A 111.0 109.5
H17 C17 H17A 112.5 109.5
HN9 N9 HN9A 109.5 120.0

Torsion Angles for AG5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N15 C1 O14 C6 183.2 180.2
O14 C1 N15 C16 357.1 0.1
O14 C1 N15 HN15 177.1 180.0
O14 C1 C6 C7 153.5 179.9
O14 C1 C6 C5 327.3 359.7
O14 C1 N15 C6 176.8 179.8
N15 C1 C6 C7 330.4 359.8
N15 C1 C6 C5 144.1 179.5
C1 N15 C16 C17 281.7 179.9
C16 N15 C1 HN15 180.0 180.0
C1 N15 C16 H16 41.7 300.0
C1 N15 C16 H16A 162.6 60.0
O14 C1 C6 N15 183.2 180.2
C6 C1 N15 C16 180.3 180.3
C6 C1 N15 HN15 0.3 0.2
C7 C6 C1 C5 186.2 180.3
C1 C6 C7 C2 180.6 180.0
C1 C6 C7 H7 0.5 359.9
C1 C6 C5 N4 181.3 180.0
C1 C6 C5 S10 1.0 360.0
C16 N15 C1 C6 180.3 180.3
C1 N15 C16 HN15 180.0 180.0
N15 C16 C17 C18 324.4 180.0
C17 C16 N15 H16 240.0 239.9
C17 C16 N15 H16A 119.2 120.0
N15 C16 C17 H17 84.4 300.0
N15 C16 C17 H17A 206.1 60.0
H16 C16 N15 H16A 239.2 240.0
C17 C16 N15 HN15 101.8 360.0
N15 C16 C17 H16 120.0 120.0
N15 C16 C17 H16A 240.8 240.0
C16 C17 C18 C24 91.6 90.0
C16 C17 C18 C28 273.1 269.8
C18 C17 C16 H17 240.0 239.9
C18 C17 C16 H17A 118.3 120.0
H16 C16 C17 H16A 120.8 120.0
H17 C17 C16 H17A 238.3 240.0
C18 C17 C16 H16 204.4 60.0
C18 C17 C16 H16A 83.6 299.9
C16 C17 C18 H17 120.0 120.1
C16 C17 C18 H17A 241.7 240.1
C24 C18 C17 C28 178.5 180.2
C17 C18 C24 C25 181.6 180.0
C17 C18 C24 H24 1.6 0.0
C17 C18 C28 C27 177.7 179.8
C17 C18 C28 H28 357.7 359.9
H17 C17 C18 H17A 121.6 120.0
C17 C18 C24 C28 181.4 179.8
C24 C18 C17 H17 331.6 330.0
C24 C18 C17 H17A 209.9 209.9
C24 C18 C28 C27 359.2 359.6
C24 C18 C28 H28 179.2 179.7
C18 C24 C25 C26 1.6 0.0
C25 C24 C18 H24 180.0 180.0
C18 C24 C25 H25 181.6 179.9
C17 C18 C28 C24 178.5 180.2
C28 C18 C17 H17 153.1 149.7
C28 C18 C17 H17A 31.4 29.7
C28 C18 C24 C25 0.2 0.2
C28 C18 C24 H24 180.3 180.2
C26 C27 C28 C18 359.5 0.4
C18 C28 C27 H27 179.6 180.3
C27 C28 C18 H28 180.0 179.9
C25 C24 C18 C28 0.2 0.2
C18 C24 C25 H24 180.0 180.0
C24 C25 C26 C27 357.1 359.9
C26 C25 C24 H25 180.0 180.1
C24 C25 C26 H26 177.1 180.0
C26 C25 C24 H24 181.6 180.0
C24 C25 C26 H25 180.0 179.9
C25 C26 C27 C28 2.2 359.9
C27 C26 C25 H26 180.0 179.9
C25 C26 C27 H27 182.2 180.0
C18 C28 C27 C26 359.5 0.4
C27 C26 C25 H25 177.1 180.0
C25 C26 C27 H26 180.0 180.1
C28 C27 C26 H27 180.0 179.9
C26 C27 C28 H28 179.5 180.2
C18 C28 C27 H28 180.0 180.1
C28 C27 C26 H26 182.2 179.8
C26 C27 C28 H27 180.0 180.1
C1 C6 C7 C5 173.5 179.7
C7 C6 C5 N4 355.3 359.8
C7 C6 C5 S10 175.0 179.7
C6 C7 C2 C3 353.9 360.0
C6 C7 C2 S8 176.9 180.0
C2 C7 C6 H7 180.0 180.1
C1 C6 C5 C7 186.0 180.3
C5 C6 C7 C2 7.0 0.2
C5 C6 C7 H7 187.0 180.2
N4 C5 C6 S10 180.3 180.0
C6 C5 N4 C3 1.1 0.0
C6 C5 S10 C13 182.5 174.8
C2 C7 C6 C5 7.0 0.2
C6 C7 C2 H7 180.0 179.9
N4 C3 C2 C7 2.8 359.8
C3 C2 C7 S8 177.0 180.0
C7 C2 C3 H3 182.8 180.0
C7 C2 S8 O11 104.4 203.5
C7 C2 S8 O12 231.1 336.4
C7 C2 S8 N9 348.4 90.0
C6 C5 N4 S10 179.7 180.0
N4 C5 S10 C13 2.3 354.8
C5 N4 C3 C2 359.9 0.2
C5 N4 C3 H3 179.9 180.0
C6 C5 S10 N4 180.2 180.0
S10 C5 N4 C3 181.3 180.0
C5 S10 C13 C19 66.5 94.8
C5 S10 C13 C23 244.7 274.6
C7 C2 C3 N4 2.8 359.8
C3 N4 C5 S10 181.3 180.0
N4 C3 C2 S8 180.0 179.8
C2 C3 N4 H3 180.0 180.2
C7 C2 C3 S8 182.8 180.0
C3 C2 C7 H7 173.9 180.0
N4 C3 C2 H3 180.0 179.8
C3 C2 S8 O11 287.3 23.5
C3 C2 S8 O12 54.0 156.5
C3 C2 S8 N9 171.3 270.0
C7 C2 S8 C3 177.1 180.0
S8 C2 C7 H7 356.9 0.0
S8 C2 C3 H3 360.0 360.0
O11 S8 C2 O12 233.4 227.1
O11 S8 C2 N9 116.0 113.5
O12 S8 C2 N9 242.7 246.4
C2 S8 N9 HN9 90.8 0.0
C2 S8 N9 HN9A 210.8 180.0
C2 S8 O11 O12 117.3 123.0
C2 S8 O11 N9 245.2 245.9
O12 S8 O11 N9 127.9 122.9
O11 S8 N9 HN9 338.9 246.5
O11 S8 N9 HN9A 98.9 66.4
C2 S8 O12 O11 243.9 237.0
C2 S8 O12 N9 116.1 114.1
O11 S8 O12 N9 232.2 237.1
O12 S8 N9 HN9 205.7 113.6
O12 S8 N9 HN9A 325.6 293.6
C2 S8 N9 O11 111.9 113.5
C2 S8 N9 O12 245.2 246.4
O11 S8 N9 O12 133.2 132.9
HN9 N9 S8 HN9A 240.0 180.0
C19 C13 S10 C23 181.8 180.2
S10 C13 C19 C20 178.0 180.0
S10 C13 C19 H19 358.1 0.0
S10 C13 C23 C22 180.8 179.7
S10 C13 C23 H23 0.8 0.0
S10 C13 C19 C23 178.1 179.8
C19 C13 C23 C22 358.9 359.5
C19 C13 C23 H23 178.9 179.8
C13 C19 C20 C21 0.9 0.1
C20 C19 C13 H19 180.0 179.9
C13 C19 C20 H20 180.9 180.0
S10 C13 C23 C19 181.9 180.2
C23 C13 C19 C20 359.9 0.2
C23 C13 C19 H19 179.9 180.3
C21 C22 C23 C13 1.4 0.5
C13 C23 C22 H22 181.4 180.3
C22 C23 C13 H23 180.0 179.7
C20 C19 C13 C23 359.9 0.2
C13 C19 C20 H19 180.0 180.1
C19 C20 C21 C22 359.4 359.9
C21 C20 C19 H20 180.0 180.1
C19 C20 C21 H21 179.4 179.9
C21 C20 C19 H19 180.9 180.0
C19 C20 C21 H20 180.0 179.9
C20 C21 C22 C23 359.3 359.8
C22 C21 C20 H21 180.0 180.0
C20 C21 C22 H22 179.4 180.0
C13 C23 C22 C21 1.4 0.5
C22 C21 C20 H20 179.4 180.0
C20 C21 C22 H21 180.0 180.0
C23 C22 C21 H22 180.0 179.7
C21 C22 C23 H23 181.4 180.2
C13 C23 C22 H23 180.0 180.3
C23 C22 C21 H21 179.4 179.8
C21 C22 C23 H22 180.0 180.3
HN15 N15 C1 C6 0.3 0.2
C1 N15 HN15 C16 180.0 180.0
HN15 N15 C16 C17 101.8 360.0
HN15 N15 C16 H16 221.8 120.0
HN15 N15 C16 H16A 342.6 240.0
N15 C16 H16 C17 238.4 240.0
H16 C16 N15 HN15 221.8 120.0
N15 C16 H16 H16A 119.2 120.0
H16 C16 C17 C18 204.4 60.0
C17 C16 H16 H16A 240.8 240.0
H16 C16 C17 H17 324.4 180.0
H16 C16 C17 H17A 86.1 300.0
N15 C16 H16A C17 121.1 120.0
H16A C16 N15 HN15 342.6 240.0
N15 C16 H16A H16 240.5 240.0
H16A C16 C17 C18 83.6 299.9
C17 C16 H16A H16 119.5 120.1
H16A C16 C17 H17 203.6 60.0
H16A C16 C17 H17A 325.3 180.0
C16 C17 H17 C18 236.8 240.0
H17 C17 C16 H16 324.4 180.0
H17 C17 C16 H16A 203.6 60.0
C16 C17 H17 H17A 118.4 119.9
H17 C17 C18 C24 331.6 330.0
H17 C17 C18 C28 153.1 149.7
C18 C17 H17 H17A 241.6 240.0
C16 C17 H17A C18 122.2 120.0
H17A C17 C16 H16 86.1 300.0
H17A C17 C16 H16A 325.3 180.0
C16 C17 H17A H17 241.1 240.0
H17A C17 C18 C24 209.9 209.9
H17A C17 C18 C28 31.4 29.7
C18 C17 H17A H17 118.9 120.0
H24 C24 C18 C28 180.3 180.2
C18 C24 H24 C25 180.0 180.0
H24 C24 C25 C26 181.6 180.0
H24 C24 C25 H25 1.6 359.9
C24 C25 H25 C26 180.0 180.1
H25 C25 C24 H24 1.6 359.9
H25 C25 C26 C27 177.1 180.0
H25 C25 C26 H26 357.1 0.1
C25 C26 H26 C27 180.0 179.9
H26 C26 C25 H25 357.1 0.1
H26 C26 C27 C28 182.2 179.8
H26 C26 C27 H27 2.2 359.9
C26 C27 H27 C28 180.0 179.9
H27 C27 C26 H26 2.2 359.9
H27 C27 C28 H28 359.5 0.1
C18 C28 H28 C27 180.0 179.9
H28 C28 C27 H27 359.5 0.1
H7 C7 C6 C5 187.0 180.2
C6 C7 H7 C2 180.0 180.1
H7 C7 C2 C3 173.9 180.0
H7 C7 C2 S8 356.9 0.0
N4 C3 H3 C2 180.0 180.2
H3 C3 C2 S8 360.0 360.0
S8 N9 HN9 HN9A 120.0 180.0
S8 N9 HN9A HN9 240.0 180.0
H19 C19 C13 C23 179.9 180.3
C13 C19 H19 C20 180.0 179.9
H19 C19 C20 C21 180.9 180.0
H19 C19 C20 H20 0.9 359.9
C19 C20 H20 C21 180.0 180.1
H20 C20 C19 H19 0.9 359.9
H20 C20 C21 C22 179.4 180.0
H20 C20 C21 H21 359.4 0.0
C20 C21 H21 C22 180.0 180.0
H21 C21 C20 H20 359.4 0.0
H21 C21 C22 C23 179.4 179.8
H21 C21 C22 H22 359.4 0.0
C21 C22 H22 C23 180.0 179.7
H22 C22 C21 H21 359.4 0.0
H22 C22 C23 H23 1.4 360.0
C13 C23 H23 C22 180.0 179.7
H23 C23 C22 H22 1.4 360.0