PDB Chemical Component AG4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AG4
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O14 |
C1 |
1.238 |
|
C1 |
N15 |
1.328 |
|
C1 |
C6 |
1.498 |
|
N15 |
C16 |
1.472 |
|
C16 |
C17 |
1.551 |
|
C17 |
C19 |
1.547 |
|
C19 |
O18 |
1.447 |
|
O18 |
C20 |
1.435 |
|
C6 |
C7 |
1.392 |
|
C6 |
C5 |
1.415 |
|
C7 |
C2 |
1.387 |
|
C5 |
N4 |
1.363 |
|
C5 |
S10 |
1.715 |
|
N4 |
C3 |
1.351 |
|
C3 |
C2 |
1.423 |
|
C2 |
S8 |
1.597 |
|
S8 |
O12 |
1.546 |
|
S8 |
O11 |
1.532 |
|
S8 |
N9 |
1.678 |
|
S10 |
C13 |
1.709 |
|
C13 |
C21 |
1.408 |
|
C13 |
C25 |
1.394 |
|
C21 |
C22 |
1.391 |
|
C22 |
C23 |
1.395 |
|
C23 |
C24 |
1.400 |
|
C24 |
C25 |
1.403 |
|
N15 |
HN15 |
1.000 |
|
C16 |
H16 |
1.100 |
|
C16 |
H16A |
1.100 |
|
C17 |
H17 |
1.100 |
|
C17 |
H17A |
1.100 |
|
C19 |
H19 |
1.100 |
|
C19 |
H19A |
1.100 |
|
C20 |
H20 |
1.100 |
|
C20 |
H20A |
1.100 |
|
C20 |
H20B |
1.100 |
|
C7 |
H7 |
1.080 |
|
C3 |
H3 |
1.080 |
|
N9 |
HN9 |
1.000 |
|
N9 |
HN9A |
1.000 |
|
C21 |
H21 |
1.080 |
|
C22 |
H22 |
1.081 |
|
C23 |
H23 |
1.080 |
|
C24 |
H24 |
1.080 |
|
C25 |
H25 |
1.080 |
|
Bond Angles for AG4
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O14 |
C1 |
N15 |
122.1 |
|
O14 |
C1 |
C6 |
116.8 |
|
N15 |
C1 |
C6 |
120.7 |
|
C1 |
N15 |
C16 |
120.0 |
|
C1 |
N15 |
HN15 |
120.0 |
|
C1 |
C6 |
C7 |
116.2 |
|
C1 |
C6 |
C5 |
121.3 |
|
N15 |
C16 |
C17 |
117.8 |
|
C16 |
N15 |
HN15 |
120.0 |
|
N15 |
C16 |
H16 |
106.8 |
|
N15 |
C16 |
H16A |
104.8 |
|
C16 |
C17 |
C19 |
117.6 |
|
C17 |
C16 |
H16 |
106.8 |
|
C17 |
C16 |
H16A |
104.8 |
|
C16 |
C17 |
H17 |
106.8 |
|
C16 |
C17 |
H17A |
104.9 |
|
C17 |
C19 |
O18 |
110.0 |
|
C19 |
C17 |
H17 |
106.8 |
|
C19 |
C17 |
H17A |
104.9 |
|
C17 |
C19 |
H19 |
109.3 |
|
C17 |
C19 |
H19A |
109.2 |
|
C19 |
O18 |
C20 |
115.5 |
|
O18 |
C19 |
H19 |
109.3 |
|
O18 |
C19 |
H19A |
109.2 |
|
O18 |
C20 |
H20 |
109.5 |
|
O18 |
C20 |
H20A |
109.4 |
|
O18 |
C20 |
H20B |
109.5 |
|
C7 |
C6 |
C5 |
122.4 |
|
C6 |
C7 |
C2 |
116.5 |
|
C6 |
C7 |
H7 |
121.7 |
|
C6 |
C5 |
N4 |
119.6 |
|
C6 |
C5 |
S10 |
118.9 |
|
C7 |
C2 |
C3 |
120.1 |
|
C7 |
C2 |
S8 |
122.2 |
|
C2 |
C7 |
H7 |
121.7 |
|
N4 |
C5 |
S10 |
121.5 |
|
C5 |
N4 |
C3 |
119.2 |
|
C5 |
S10 |
C13 |
108.6 |
|
N4 |
C3 |
C2 |
122.0 |
|
N4 |
C3 |
H3 |
119.0 |
|
C3 |
C2 |
S8 |
117.6 |
|
C2 |
C3 |
H3 |
119.0 |
|
C2 |
S8 |
O12 |
106.8 |
|
C2 |
S8 |
O11 |
104.6 |
|
C2 |
S8 |
N9 |
112.4 |
|
O12 |
S8 |
O11 |
111.8 |
|
O12 |
S8 |
N9 |
109.0 |
|
O11 |
S8 |
N9 |
112.0 |
|
S8 |
N9 |
HN9 |
109.5 |
|
S8 |
N9 |
HN9A |
109.5 |
|
S10 |
C13 |
C21 |
120.4 |
|
S10 |
C13 |
C25 |
119.9 |
|
C21 |
C13 |
C25 |
119.6 |
|
C13 |
C21 |
C22 |
120.9 |
|
C13 |
C21 |
H21 |
119.5 |
|
C13 |
C25 |
C24 |
119.5 |
|
C13 |
C25 |
H25 |
120.3 |
|
C21 |
C22 |
C23 |
119.4 |
|
C22 |
C21 |
H21 |
119.5 |
|
C21 |
C22 |
H22 |
120.3 |
|
C22 |
C23 |
C24 |
120.1 |
|
C23 |
C22 |
H22 |
120.3 |
|
C22 |
C23 |
H23 |
119.9 |
|
C23 |
C24 |
C25 |
120.5 |
|
C24 |
C23 |
H23 |
120.0 |
|
C23 |
C24 |
H24 |
119.7 |
|
C25 |
C24 |
H24 |
119.8 |
|
C24 |
C25 |
H25 |
120.3 |
|
H16 |
C16 |
H16A |
116.3 |
|
H17 |
C17 |
H17A |
116.1 |
|
H19 |
C19 |
H19A |
109.8 |
|
H20 |
C20 |
H20A |
109.5 |
|
H20 |
C20 |
H20B |
109.4 |
|
H20A |
C20 |
H20B |
109.5 |
|
HN9 |
N9 |
HN9A |
109.4 |
|
Torsion Angles for AG4
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N15 |
C1 |
O14 |
C6 |
172.9 |
|
O14 |
C1 |
N15 |
C16 |
348.2 |
|
O14 |
C1 |
N15 |
HN15 |
168.2 |
|
O14 |
C1 |
C6 |
C7 |
119.1 |
|
O14 |
C1 |
C6 |
C5 |
302.8 |
|
O14 |
C1 |
N15 |
C6 |
187.4 |
|
N15 |
C1 |
C6 |
C7 |
306.1 |
|
N15 |
C1 |
C6 |
C5 |
129.8 |
|
C1 |
N15 |
C16 |
C17 |
263.3 |
|
C16 |
N15 |
C1 |
HN15 |
180.0 |
|
C1 |
N15 |
C16 |
H16 |
23.3 |
|
C1 |
N15 |
C16 |
H16A |
147.2 |
|
O14 |
C1 |
C6 |
N15 |
173.0 |
|
C6 |
C1 |
N15 |
C16 |
160.8 |
|
C6 |
C1 |
N15 |
HN15 |
340.8 |
|
C7 |
C6 |
C1 |
C5 |
176.3 |
|
C1 |
C6 |
C7 |
C2 |
183.6 |
|
C1 |
C6 |
C7 |
H7 |
3.7 |
|
C1 |
C6 |
C5 |
N4 |
177.3 |
|
C1 |
C6 |
C5 |
S10 |
356.2 |
|
C16 |
N15 |
C1 |
C6 |
160.8 |
|
C1 |
N15 |
C16 |
HN15 |
180.0 |
|
N15 |
C16 |
C17 |
C19 |
55.3 |
|
C17 |
C16 |
N15 |
H16 |
240.0 |
|
C17 |
C16 |
N15 |
H16A |
116.1 |
|
N15 |
C16 |
C17 |
H17 |
175.3 |
|
N15 |
C16 |
C17 |
H17A |
299.1 |
|
H16 |
C16 |
N15 |
H16A |
236.1 |
|
C17 |
C16 |
N15 |
HN15 |
83.3 |
|
N15 |
C16 |
C17 |
H16 |
120.0 |
|
N15 |
C16 |
C17 |
H16A |
244.0 |
|
C16 |
C17 |
C19 |
O18 |
71.3 |
|
C19 |
C17 |
C16 |
H17 |
240.0 |
|
C19 |
C17 |
C16 |
H17A |
116.2 |
|
C16 |
C17 |
C19 |
H19 |
191.3 |
|
C16 |
C17 |
C19 |
H19A |
311.5 |
|
H16 |
C16 |
C17 |
H16A |
123.9 |
|
H17 |
C17 |
C16 |
H17A |
236.2 |
|
C19 |
C17 |
C16 |
H16 |
295.3 |
|
C19 |
C17 |
C16 |
H16A |
171.3 |
|
C16 |
C17 |
C19 |
H17 |
120.0 |
|
C16 |
C17 |
C19 |
H17A |
243.9 |
|
C17 |
C19 |
O18 |
C20 |
226.0 |
|
O18 |
C19 |
C17 |
H19 |
240.0 |
|
O18 |
C19 |
C17 |
H19A |
119.8 |
|
H17 |
C17 |
C19 |
H17A |
123.8 |
|
H19 |
C19 |
C17 |
H19A |
239.8 |
|
O18 |
C19 |
C17 |
H17 |
311.3 |
|
O18 |
C19 |
C17 |
H17A |
187.4 |
|
C17 |
C19 |
O18 |
H19 |
120.0 |
|
C17 |
C19 |
O18 |
H19A |
240.2 |
|
C19 |
O18 |
C20 |
H20 |
58.6 |
|
C19 |
O18 |
C20 |
H20A |
178.6 |
|
C19 |
O18 |
C20 |
H20B |
298.6 |
|
H19 |
C19 |
O18 |
H19A |
120.2 |
|
C20 |
O18 |
C19 |
H19 |
106.0 |
|
C20 |
O18 |
C19 |
H19A |
345.8 |
|
H20 |
C20 |
O18 |
H20A |
240.0 |
|
H20 |
C20 |
O18 |
H20B |
120.0 |
|
H20A |
C20 |
O18 |
H20B |
240.0 |
|
C1 |
C6 |
C7 |
C5 |
183.8 |
|
C7 |
C6 |
C5 |
N4 |
1.2 |
|
C7 |
C6 |
C5 |
S10 |
180.2 |
|
C6 |
C7 |
C2 |
C3 |
359.1 |
|
C6 |
C7 |
C2 |
S8 |
181.3 |
|
C2 |
C7 |
C6 |
H7 |
180.0 |
|
C1 |
C6 |
C5 |
C7 |
176.0 |
|
C5 |
C6 |
C7 |
C2 |
359.9 |
|
C5 |
C6 |
C7 |
H7 |
179.9 |
|
N4 |
C5 |
C6 |
S10 |
181.1 |
|
C6 |
C5 |
N4 |
C3 |
358.7 |
|
C6 |
C5 |
S10 |
C13 |
184.5 |
|
C2 |
C7 |
C6 |
C5 |
359.9 |
|
C6 |
C7 |
C2 |
H7 |
180.0 |
|
N4 |
C3 |
C2 |
C7 |
0.8 |
|
C3 |
C2 |
C7 |
S8 |
177.8 |
|
C7 |
C2 |
C3 |
H3 |
180.8 |
|
C7 |
C2 |
S8 |
O12 |
235.8 |
|
C7 |
C2 |
S8 |
O11 |
117.1 |
|
C7 |
C2 |
S8 |
N9 |
355.3 |
|
C6 |
C5 |
N4 |
S10 |
178.9 |
|
N4 |
C5 |
S10 |
C13 |
3.4 |
|
C5 |
N4 |
C3 |
C2 |
0.3 |
|
C5 |
N4 |
C3 |
H3 |
180.3 |
|
C6 |
C5 |
S10 |
N4 |
181.1 |
|
S10 |
C5 |
N4 |
C3 |
179.8 |
|
C5 |
S10 |
C13 |
C21 |
82.9 |
|
C5 |
S10 |
C13 |
C25 |
259.7 |
|
C7 |
C2 |
C3 |
N4 |
0.8 |
|
C3 |
N4 |
C5 |
S10 |
179.8 |
|
N4 |
C3 |
C2 |
S8 |
178.7 |
|
C2 |
C3 |
N4 |
H3 |
180.0 |
|
C7 |
C2 |
C3 |
S8 |
182.1 |
|
C3 |
C2 |
C7 |
H7 |
179.1 |
|
N4 |
C3 |
C2 |
H3 |
180.0 |
|
C3 |
C2 |
S8 |
O12 |
58.0 |
|
C3 |
C2 |
S8 |
O11 |
299.3 |
|
C3 |
C2 |
S8 |
N9 |
177.5 |
|
C7 |
C2 |
S8 |
C3 |
177.8 |
|
S8 |
C2 |
C7 |
H7 |
1.3 |
|
S8 |
C2 |
C3 |
H3 |
358.7 |
|
O12 |
S8 |
C2 |
O11 |
118.7 |
|
O12 |
S8 |
C2 |
N9 |
240.5 |
|
O11 |
S8 |
C2 |
N9 |
121.8 |
|
C2 |
S8 |
N9 |
HN9 |
269.5 |
|
C2 |
S8 |
N9 |
HN9A |
29.5 |
|
C2 |
S8 |
O12 |
O11 |
246.1 |
|
C2 |
S8 |
O12 |
N9 |
121.6 |
|
O11 |
S8 |
O12 |
N9 |
235.5 |
|
O12 |
S8 |
N9 |
HN9 |
27.7 |
|
O12 |
S8 |
N9 |
HN9A |
147.7 |
|
C2 |
S8 |
O11 |
O12 |
115.2 |
|
C2 |
S8 |
O11 |
N9 |
238.0 |
|
O12 |
S8 |
O11 |
N9 |
122.8 |
|
O11 |
S8 |
N9 |
HN9 |
152.0 |
|
O11 |
S8 |
N9 |
HN9A |
272.0 |
|
C2 |
S8 |
N9 |
O12 |
241.8 |
|
C2 |
S8 |
N9 |
O11 |
117.5 |
|
O12 |
S8 |
N9 |
O11 |
235.7 |
|
HN9 |
N9 |
S8 |
HN9A |
240.0 |
|
C21 |
C13 |
S10 |
C25 |
183.1 |
|
S10 |
C13 |
C21 |
C22 |
179.1 |
|
S10 |
C13 |
C21 |
H21 |
359.0 |
|
S10 |
C13 |
C25 |
C24 |
180.9 |
|
S10 |
C13 |
C25 |
H25 |
0.9 |
|
S10 |
C13 |
C21 |
C25 |
176.9 |
|
C21 |
C13 |
C25 |
C24 |
357.8 |
|
C21 |
C13 |
C25 |
H25 |
177.8 |
|
C13 |
C21 |
C22 |
C23 |
359.4 |
|
C22 |
C21 |
C13 |
H21 |
180.0 |
|
C13 |
C21 |
C22 |
H22 |
179.4 |
|
S10 |
C13 |
C25 |
C21 |
183.1 |
|
C25 |
C13 |
C21 |
C22 |
2.2 |
|
C25 |
C13 |
C21 |
H21 |
182.2 |
|
C23 |
C24 |
C25 |
C13 |
0.7 |
|
C13 |
C25 |
C24 |
H24 |
180.7 |
|
C24 |
C25 |
C13 |
H25 |
180.0 |
|
C22 |
C21 |
C13 |
C25 |
2.2 |
|
C13 |
C21 |
C22 |
H21 |
180.0 |
|
C21 |
C22 |
C23 |
C24 |
359.1 |
|
C23 |
C22 |
C21 |
H22 |
180.0 |
|
C21 |
C22 |
C23 |
H23 |
179.1 |
|
C23 |
C22 |
C21 |
H21 |
179.4 |
|
C21 |
C22 |
C23 |
H22 |
180.0 |
|
C22 |
C23 |
C24 |
C25 |
0.9 |
|
C24 |
C23 |
C22 |
H23 |
180.0 |
|
C22 |
C23 |
C24 |
H24 |
180.8 |
|
C13 |
C25 |
C24 |
C23 |
0.7 |
|
C24 |
C23 |
C22 |
H22 |
179.1 |
|
C22 |
C23 |
C24 |
H23 |
180.0 |
|
C25 |
C24 |
C23 |
H24 |
180.0 |
|
C23 |
C24 |
C25 |
H25 |
180.7 |
|
C13 |
C25 |
C24 |
H25 |
180.0 |
|
C25 |
C24 |
C23 |
H23 |
180.8 |
|
C23 |
C24 |
C25 |
H24 |
180.0 |
|
HN15 |
N15 |
C1 |
C6 |
340.8 |
|
C1 |
N15 |
HN15 |
C16 |
180.0 |
|
HN15 |
N15 |
C16 |
C17 |
83.3 |
|
HN15 |
N15 |
C16 |
H16 |
203.3 |
|
HN15 |
N15 |
C16 |
H16A |
327.3 |
|
N15 |
C16 |
H16 |
C17 |
233.1 |
|
H16 |
C16 |
N15 |
HN15 |
203.3 |
|
N15 |
C16 |
H16 |
H16A |
116.5 |
|
H16 |
C16 |
C17 |
C19 |
295.3 |
|
C17 |
C16 |
H16 |
H16A |
243.4 |
|
H16 |
C16 |
C17 |
H17 |
55.3 |
|
H16 |
C16 |
C17 |
H17A |
179.1 |
|
N15 |
C16 |
H16A |
C17 |
124.7 |
|
H16A |
C16 |
N15 |
HN15 |
327.3 |
|
N15 |
C16 |
H16A |
H16 |
242.4 |
|
H16A |
C16 |
C17 |
C19 |
171.3 |
|
C17 |
C16 |
H16A |
H16 |
117.6 |
|
H16A |
C16 |
C17 |
H17 |
291.4 |
|
H16A |
C16 |
C17 |
H17A |
55.2 |
|
C16 |
C17 |
H17 |
C19 |
233.3 |
|
H17 |
C17 |
C16 |
H16 |
55.3 |
|
H17 |
C17 |
C16 |
H16A |
291.4 |
|
C16 |
C17 |
H17 |
H17A |
116.6 |
|
H17 |
C17 |
C19 |
O18 |
311.3 |
|
C19 |
C17 |
H17 |
H17A |
243.3 |
|
H17 |
C17 |
C19 |
H19 |
71.3 |
|
H17 |
C17 |
C19 |
H19A |
191.5 |
|
C16 |
C17 |
H17A |
C19 |
124.6 |
|
H17A |
C17 |
C16 |
H16 |
179.1 |
|
H17A |
C17 |
C16 |
H16A |
55.2 |
|
C16 |
C17 |
H17A |
H17 |
242.3 |
|
H17A |
C17 |
C19 |
O18 |
187.4 |
|
C19 |
C17 |
H17A |
H17 |
117.7 |
|
H17A |
C17 |
C19 |
H19 |
307.4 |
|
H17A |
C17 |
C19 |
H19A |
67.6 |
|
C17 |
C19 |
H19 |
O18 |
239.6 |
|
H19 |
C19 |
C17 |
H17 |
71.3 |
|
H19 |
C19 |
C17 |
H17A |
307.4 |
|
C17 |
C19 |
H19 |
H19A |
119.8 |
|
H19 |
C19 |
O18 |
C20 |
106.0 |
|
O18 |
C19 |
H19 |
H19A |
240.2 |
|
C17 |
C19 |
H19A |
O18 |
120.3 |
|
H19A |
C19 |
C17 |
H17 |
191.5 |
|
H19A |
C19 |
C17 |
H17A |
67.6 |
|
C17 |
C19 |
H19A |
H19 |
240.1 |
|
H19A |
C19 |
O18 |
C20 |
345.8 |
|
O18 |
C19 |
H19A |
H19 |
119.8 |
|
O18 |
C20 |
H20 |
H20A |
120.0 |
|
O18 |
C20 |
H20 |
H20B |
240.0 |
|
H20A |
C20 |
H20 |
H20B |
120.0 |
|
O18 |
C20 |
H20A |
H20 |
240.0 |
|
O18 |
C20 |
H20A |
H20B |
120.0 |
|
H20 |
C20 |
H20A |
H20B |
240.0 |
|
O18 |
C20 |
H20B |
H20 |
120.0 |
|
O18 |
C20 |
H20B |
H20A |
240.0 |
|
H20 |
C20 |
H20B |
H20A |
120.0 |
|
H7 |
C7 |
C6 |
C5 |
179.9 |
|
C6 |
C7 |
H7 |
C2 |
180.0 |
|
H7 |
C7 |
C2 |
C3 |
179.1 |
|
H7 |
C7 |
C2 |
S8 |
1.3 |
|
N4 |
C3 |
H3 |
C2 |
180.0 |
|
H3 |
C3 |
C2 |
S8 |
358.7 |
|
S8 |
N9 |
HN9 |
HN9A |
120.0 |
|
S8 |
N9 |
HN9A |
HN9 |
240.0 |
|
H21 |
C21 |
C13 |
C25 |
182.2 |
|
C13 |
C21 |
H21 |
C22 |
180.0 |
|
H21 |
C21 |
C22 |
C23 |
179.4 |
|
H21 |
C21 |
C22 |
H22 |
359.4 |
|
C21 |
C22 |
H22 |
C23 |
180.0 |
|
H22 |
C22 |
C21 |
H21 |
359.4 |
|
H22 |
C22 |
C23 |
C24 |
179.1 |
|
H22 |
C22 |
C23 |
H23 |
359.2 |
|
C22 |
C23 |
H23 |
C24 |
180.0 |
|
H23 |
C23 |
C22 |
H22 |
359.2 |
|
H23 |
C23 |
C24 |
C25 |
180.8 |
|
H23 |
C23 |
C24 |
H24 |
0.8 |
|
C23 |
C24 |
H24 |
C25 |
180.0 |
|
H24 |
C24 |
C23 |
H23 |
0.8 |
|
H24 |
C24 |
C25 |
H25 |
0.7 |
|
C13 |
C25 |
H25 |
C24 |
180.0 |
|
H25 |
C25 |
C24 |
H24 |
0.7 |
|