PDB Chemical Component AG1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AG1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O41 C31 1.214 1.214
C31 C30 1.406 1.478
C31 N20 1.368 1.345
C30 C29 1.394 1.405
C30 C33 1.406 1.404
C29 C28 1.438 1.472
C29 C22 1.372 1.389
C28 C23 1.406 1.416
C28 C27 1.400 1.392
C23 C24 1.404 1.394
C23 N19 1.289 1.359
C27 C26 1.401 1.382
C26 C25 1.429 1.391
C26 O2 1.366 1.359
C25 C24 1.430 1.376
C33 C32 1.408 1.475
C33 C34 1.419 1.413
C32 N20 1.380 1.344
C32 O1 1.211 1.215
C34 C40 1.408 1.422
C34 C36 1.402 1.401
C40 C22 1.357 1.378
C40 N21 1.370 1.352
C22 N19 1.272 1.380
N19 RU 2.065 1.956
N21 C38 1.347 1.283
N21 RU 2.053 1.958
C38 C37 1.422 1.404
C37 C36 1.394 1.371
C37 F5 1.359 1.351
RU C12 1.986 1.990
RU C14 2.161 1.733
C15 C16 1.386 1.328
C15 C14 1.405 1.512
C16 C17 1.397 1.465
C17 C18 1.393 1.328
C18 C14 1.397 1.512
C12 O13 1.087 1.004
C14 C3 1.476 1.507
C3 O9 1.228 1.213
C3 N4 1.404 1.348
N4 C6 1.486 1.465
C6 C10 1.542 1.530
C6 C7 1.540 1.507
C7 O8 1.363 1.343
C7 O11 1.218 1.207
N20 H20 1.000 0.970
C27 H27 1.080 1.079
C24 H24 1.080 1.080
C25 H25 1.080 1.080
O2 H2 0.950 0.967
C36 H36 1.080 1.080
C38 H38 1.080 1.080
C15 H151 1.080 1.079
C16 H16 1.080 1.079
C17 H171 1.080 1.080
C18 H18 1.080 1.080
N4 H4 1.000 0.970
C6 H6 1.100 1.090
C10 H101 1.100 1.091
C10 H102 1.100 1.090
C10 H103 1.100 1.090
O8 H8 0.950 0.966

Bond Angles for AG1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C31 N20 C32 107.1 110.8
C31 N20 H20 126.4 124.5
C30 C33 C32 105.3 105.8
C29 C22 N19 114.6 110.3
C28 C23 N19 109.6 108.4
C28 C27 H27 120.4 119.9
C23 C24 H24 120.2 119.7
C23 N19 C22 108.9 109.6
C23 N19 RU 138.1 153.3
C27 C26 O2 119.7 120.0
C25 C26 O2 121.8 120.1
C26 C25 C24 121.2 120.6
C26 C25 H25 119.4 119.7
C26 O2 H2 109.5 114.0
C25 C24 H24 120.2 119.6
C24 C25 H25 119.4 119.7
C33 C32 N20 110.4 108.9
C33 C32 O1 128.1 125.6
C33 C34 C36 125.9 123.3
N20 C32 O1 121.5 125.6
C32 N20 H20 126.5 124.7
C34 C40 N21 126.5 119.2
C34 C36 C37 117.3 119.0
C34 C36 H36 121.4 120.5
C40 C22 N19 121.6 125.4
C40 N21 C38 116.8 123.1
C40 N21 RU 113.4 99.3
C22 N19 RU 112.9 97.1
N21 RU N19 77.9 95.7
N19 RU C12 96.4 112.1
N19 RU C14 118.7 112.1
N21 C38 H38 120.2 119.7
N21 RU C12 95.9 112.1
N21 RU C14 153.2 112.1
C38 C37 C36 123.2 120.0
C38 C37 F5 119.5 120.0
C37 C38 H38 120.2 119.7
C36 C37 F5 117.3 120.0
C37 C36 H36 121.4 120.5
C12 RU C14 102.4 111.8
RU C12 O13 178.0 180.0
RU C14 C18 72.5 110.3
RU C14 C3 121.6 110.3
C15 C16 C17 107.3 110.6
C16 C15 H151 125.8 126.6
C15 C16 H16 126.4 124.7
C15 C14 C3 124.8 110.4
C17 C16 H16 126.3 124.7
C16 C17 H171 125.4 124.7
C17 C18 H18 126.5 126.6
C18 C14 C3 127.2 110.3
C14 C18 H18 126.4 126.6
C14 C3 O9 116.8 120.0
C14 C3 N4 114.8 120.0
N4 C3 O9 128.2 120.0
C3 N4 C6 132.2 120.0
C3 N4 H4 113.9 120.0
N4 C6 H6 103.5 109.5
C6 C10 H101 109.5 109.4
C6 C10 H102 109.5 109.4
C6 C10 H103 109.4 109.5
C6 C7 O8 115.5 120.0
C6 C7 O11 121.3 120.0
C7 C6 H6 115.6 109.5
O8 C7 O11 123.1 120.0
C7 O8 H8 109.5 117.0
H101 C10 H102 109.5 109.4
H101 C10 H103 109.4 109.5
H102 C10 H103 109.5 109.5

Torsion Angles for AG1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O41 C31 N20 H20 357.4 359.9
C31 C30 C33 C32 359.0 360.0
C33 C32 N20 C31 0.1 360.0
C31 N20 C32 O1 179.7 180.0
C32 N20 C31 H20 180.0 180.1
C30 C29 C22 N19 178.3 180.2
C30 C33 C32 N20 0.6 0.0
C30 C33 C32 O1 181.0 180.0
C30 C33 C34 C36 179.6 180.0
C29 C28 C23 N19 1.9 0.2
C29 C28 C27 H27 0.1 359.4
C23 N19 C22 C29 3.7 0.1
C40 C22 C29 N19 181.7 179.9
C29 C22 N19 RU 180.2 180.0
C28 C23 C24 H24 180.5 179.9
C28 C23 N19 C22 356.6 359.9
C28 C23 N19 RU 181.4 180.0
C27 C28 C23 N19 181.5 179.8
C28 C27 C26 O2 180.2 179.7
C25 C24 C23 H24 180.0 180.1
C23 C24 C25 H25 180.9 180.0
C29 C22 N19 C23 3.7 0.1
N19 C23 C24 H24 356.9 359.9
C40 C22 N19 C23 182.0 180.2
C22 N19 C23 RU 175.2 179.9
N21 RU N19 C23 176.6 179.8
C23 N19 RU C12 271.2 296.5
C23 N19 RU C14 19.2 63.2
C25 C26 C27 O2 180.5 179.7
C27 C26 C25 H25 178.5 180.3
C27 C26 O2 H2 67.2 269.7
C27 C26 C25 O2 179.4 180.3
C25 C26 O2 H2 246.6 90.0
C26 C25 C24 H24 181.0 180.0
C24 C25 C26 H25 180.0 180.1
O2 C26 C25 C24 179.0 180.1
O2 C26 C25 H25 359.0 0.0
C23 C24 C25 H24 180.0 179.9
C24 C25 C26 O2 179.0 180.1
C26 C25 C24 H25 180.0 179.9
C31 N20 C32 C33 0.1 360.0
C32 C33 C34 C36 4.0 0.1
N20 C32 C33 O1 179.6 180.0
C33 C32 N20 H20 180.1 180.1
C33 C34 C40 N21 182.5 180.0
C33 C34 C36 C37 179.0 180.1
C33 C34 C36 H36 359.0 0.0
C31 N20 C32 H20 180.0 179.9
C33 C32 N20 O1 180.4 180.0
C33 C32 O1 N20 179.6 180.0
O1 C32 N20 H20 359.7 0.1
C34 C40 C22 N19 181.2 179.9
C34 C40 N21 C38 356.9 359.9
C34 C40 N21 RU 180.1 180.0
C36 C34 C40 N21 1.4 360.0
C38 C37 C36 C34 0.1 359.9
C34 C36 C37 F5 180.8 180.0
C37 C36 C34 H36 180.0 180.1
C29 C22 C40 N19 178.1 180.1
C23 N19 C22 C40 182.0 180.2
C40 C22 N19 RU 358.5 0.1
N21 C40 C22 N19 0.3 359.9
C40 N21 RU N19 358.6 360.0
C40 N21 C38 H38 183.1 180.0
C40 N21 RU C12 263.3 243.3
C40 N21 RU C14 130.2 116.6
C23 N19 C22 RU 183.5 180.1
N21 RU N19 C22 1.5 360.0
C22 N19 RU C12 96.2 116.6
C22 N19 RU C14 204.2 243.3
C23 N19 RU C22 175.0 179.9
N21 RU N19 C12 265.3 243.3
N21 RU N19 C14 157.4 116.6
C12 RU N19 C14 252.0 233.3
N19 RU C12 O13 325.7 3.5
N19 RU C14 C18 71.0 286.2
N19 RU C14 C3 307.6 164.2
C40 N21 C38 RU 183.8 180.1
C37 C38 N21 H38 180.0 180.0
C23 N19 RU N21 176.6 179.8
C40 N21 RU C38 176.3 179.9
C22 N19 RU N21 1.5 360.0
N19 RU N21 C12 95.3 116.7
N19 RU N21 C14 228.4 243.4
RU N21 C38 H38 359.3 360.0
C12 RU N21 C14 133.1 126.7
N21 RU C12 O13 44.1 109.9
N21 RU C14 C18 307.4 179.9
N21 RU C14 C3 184.1 57.8
C34 C36 C37 C38 0.1 359.9
C40 N21 C38 C37 3.1 0.1
N21 C38 C37 H38 180.0 180.0
C36 C37 C38 F5 180.7 180.1
C38 C37 C36 H36 180.1 180.0
C34 C36 C37 H36 180.0 179.9
C38 C37 C36 F5 179.3 179.9
C36 C37 C38 H38 178.2 180.0
C38 C37 F5 C36 180.6 180.1
F5 C37 C38 H38 357.5 360.0
F5 C37 C36 H36 0.8 0.1
N21 RU C12 N19 78.4 106.3
N19 RU C12 C14 121.3 126.8
N21 RU C12 C14 199.7 233.2
C12 RU C14 C18 175.5 53.1
C12 RU C14 C3 52.2 291.0
N21 RU C14 N19 236.5 253.7
N19 RU C14 C12 255.5 233.2
N21 RU C14 C12 131.9 126.8
C14 RU C12 O13 204.4 236.7
C15 C14 RU C3 239.4 237.7
C18 C14 RU C3 123.3 122.1
RU C14 C18 H18 244.5 298.9
RU C14 C3 O9 90.0 222.0
RU C14 C3 N4 273.8 42.0
C16 C15 C14 C3 178.7 118.9
C17 C16 C15 H16 180.0 179.8
C15 C16 C17 H171 180.0 180.1
RU C14 C15 C3 116.9 122.2
C18 C14 C15 C3 181.2 241.1
C15 C14 C18 H18 180.0 180.0
C15 C14 C3 O9 180.1 344.3
C15 C14 C3 N4 3.9 164.2
C17 C16 C15 H151 180.0 180.0
C15 C16 C17 H16 180.0 180.2
C16 C17 C18 H18 180.0 179.9
C17 C18 C14 C3 181.3 241.2
C14 C18 C17 H18 180.0 179.8
RU C14 C18 C3 243.2 237.9
C15 C14 C18 C3 178.7 119.0
C17 C18 C14 H18 180.0 180.2
C18 C14 C3 O9 358.6 99.9
C18 C14 C3 N4 182.4 279.9
O13 C12 RU C14 204.4 236.7
RU C14 C3 C18 91.3 122.1
C3 C14 C18 H18 1.3 61.0
N4 C3 C14 O9 183.8 179.9
C14 C3 N4 C6 184.6 184.7
C14 C3 N4 H4 4.6 4.8
C14 C3 O9 N4 184.4 179.9
O9 C3 N4 C6 8.9 4.7
O9 C3 N4 H4 188.9 184.7
C14 C3 N4 O9 175.7 180.1
C3 N4 C6 H6 122.1 325.3
C6 N4 C3 O9 8.9 4.7
C3 N4 C6 H4 180.0 180.1
N4 C6 C10 H101 84.8 180.0
N4 C6 C10 H102 204.8 299.9
N4 C6 C10 H103 324.8 60.0
N4 C6 C7 O8 282.5 158.1
N4 C6 C7 O11 100.1 338.1
C7 C6 N4 H6 237.8 240.0
C3 N4 C6 C10 225.9 85.3
H101 C10 C6 H102 240.0 240.1
H101 C10 C6 H103 120.0 120.1
H102 C10 C6 H103 240.0 239.9
C3 N4 C6 C7 359.9 205.3
N4 C6 C7 H6 114.2 120.0
C7 C6 C10 H101 313.8 60.1
C7 C6 C10 H102 73.8 180.0
C7 C6 C10 H103 193.8 300.0
O8 C7 C6 O11 182.4 180.0
C6 C7 O8 H8 177.6 179.9
C6 C7 O8 O11 177.6 180.0
O8 C7 C6 H6 168.3 38.0
C6 C7 O11 O8 182.5 180.0
O11 C7 C6 H6 345.9 218.1
O11 C7 O8 H8 360.0 359.9
C31 N20 H20 C32 180.0 180.1
H20 N20 C32 O1 359.7 0.1
H27 C27 C26 O2 0.2 0.3
H24 C24 C25 H25 1.0 0.1
H25 C25 C26 O2 359.0 0.0
C26 C25 H25 C24 180.0 180.1
H25 C25 C24 H24 1.0 0.1
C34 C36 H36 C37 180.0 180.1
H36 C36 C37 F5 0.8 0.1
H38 C38 C37 C36 178.2 180.0
H38 C38 C37 F5 357.5 360.0
H151 C15 C16 C17 180.0 180.0
H151 C15 C16 H16 0.1 0.2
H151 C15 C14 C3 358.7 298.7
C15 C16 H16 C17 180.0 179.8
H16 C16 C15 H151 0.1 0.2
H16 C16 C17 H171 360.0 359.9
H171 C17 C16 H16 360.0 359.9
H171 C17 C18 H18 360.0 0.2
H18 C18 C14 C3 1.3 61.0
H4 N4 C3 O9 188.9 184.7
C3 N4 H4 C6 180.0 179.9
H4 N4 C6 H6 302.1 145.3
H6 C6 C10 H101 193.6 300.1
H6 C6 C10 H102 313.7 59.9
H6 C6 C10 H103 73.7 180.0
H6 C6 C7 O8 168.3 38.0
H6 C6 C7 O11 345.9 218.1
C6 C10 H101 H102 120.0 119.9
C6 C10 H101 H103 240.0 240.0
H102 C10 H101 H103 120.0 120.1
C6 C10 H102 H101 240.0 240.1
C6 C10 H102 H103 120.0 120.0
H101 C10 H102 H103 240.0 239.9
C6 C10 H103 H101 120.0 120.0
C6 C10 H103 H102 240.0 240.0
H101 C10 H103 H102 120.0 120.0
H8 O8 C7 O11 360.0 359.9