PDB Chemical Component AG1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AG1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O41 |
C31 |
1.214 |
1.214 |
C31 |
C30 |
1.406 |
1.478 |
C31 |
N20 |
1.368 |
1.345 |
C30 |
C29 |
1.394 |
1.405 |
C30 |
C33 |
1.406 |
1.404 |
C29 |
C28 |
1.438 |
1.472 |
C29 |
C22 |
1.372 |
1.389 |
C28 |
C23 |
1.406 |
1.416 |
C28 |
C27 |
1.400 |
1.392 |
C23 |
C24 |
1.404 |
1.394 |
C23 |
N19 |
1.289 |
1.359 |
C27 |
C26 |
1.401 |
1.382 |
C26 |
C25 |
1.429 |
1.391 |
C26 |
O2 |
1.366 |
1.359 |
C25 |
C24 |
1.430 |
1.376 |
C33 |
C32 |
1.408 |
1.475 |
C33 |
C34 |
1.419 |
1.413 |
C32 |
N20 |
1.380 |
1.344 |
C32 |
O1 |
1.211 |
1.215 |
C34 |
C40 |
1.408 |
1.422 |
C34 |
C36 |
1.402 |
1.401 |
C40 |
C22 |
1.357 |
1.378 |
C40 |
N21 |
1.370 |
1.352 |
C22 |
N19 |
1.272 |
1.380 |
N19 |
RU |
2.065 |
1.956 |
N21 |
C38 |
1.347 |
1.283 |
N21 |
RU |
2.053 |
1.958 |
C38 |
C37 |
1.422 |
1.404 |
C37 |
C36 |
1.394 |
1.371 |
C37 |
F5 |
1.359 |
1.351 |
RU |
C12 |
1.986 |
1.990 |
RU |
C14 |
2.161 |
1.733 |
C15 |
C16 |
1.386 |
1.328 |
C15 |
C14 |
1.405 |
1.512 |
C16 |
C17 |
1.397 |
1.465 |
C17 |
C18 |
1.393 |
1.328 |
C18 |
C14 |
1.397 |
1.512 |
C12 |
O13 |
1.087 |
1.004 |
C14 |
C3 |
1.476 |
1.507 |
C3 |
O9 |
1.228 |
1.213 |
C3 |
N4 |
1.404 |
1.348 |
N4 |
C6 |
1.486 |
1.465 |
C6 |
C10 |
1.542 |
1.530 |
C6 |
C7 |
1.540 |
1.507 |
C7 |
O8 |
1.363 |
1.343 |
C7 |
O11 |
1.218 |
1.207 |
N20 |
H20 |
1.000 |
0.970 |
C27 |
H27 |
1.080 |
1.079 |
C24 |
H24 |
1.080 |
1.080 |
C25 |
H25 |
1.080 |
1.080 |
O2 |
H2 |
0.950 |
0.967 |
C36 |
H36 |
1.080 |
1.080 |
C38 |
H38 |
1.080 |
1.080 |
C15 |
H151 |
1.080 |
1.079 |
C16 |
H16 |
1.080 |
1.079 |
C17 |
H171 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
N4 |
H4 |
1.000 |
0.970 |
C6 |
H6 |
1.100 |
1.090 |
C10 |
H101 |
1.100 |
1.091 |
C10 |
H102 |
1.100 |
1.090 |
C10 |
H103 |
1.100 |
1.090 |
O8 |
H8 |
0.950 |
0.966 |
Bond Angles for AG1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C31 |
N20 |
C32 |
107.1 |
110.8 |
C31 |
N20 |
H20 |
126.4 |
124.5 |
C30 |
C33 |
C32 |
105.3 |
105.8 |
C29 |
C22 |
N19 |
114.6 |
110.3 |
C28 |
C23 |
N19 |
109.6 |
108.4 |
C28 |
C27 |
H27 |
120.4 |
119.9 |
C23 |
C24 |
H24 |
120.2 |
119.7 |
C23 |
N19 |
C22 |
108.9 |
109.6 |
C23 |
N19 |
RU |
138.1 |
153.3 |
C27 |
C26 |
O2 |
119.7 |
120.0 |
C25 |
C26 |
O2 |
121.8 |
120.1 |
C26 |
C25 |
C24 |
121.2 |
120.6 |
C26 |
C25 |
H25 |
119.4 |
119.7 |
C26 |
O2 |
H2 |
109.5 |
114.0 |
C25 |
C24 |
H24 |
120.2 |
119.6 |
C24 |
C25 |
H25 |
119.4 |
119.7 |
C33 |
C32 |
N20 |
110.4 |
108.9 |
C33 |
C32 |
O1 |
128.1 |
125.6 |
C33 |
C34 |
C36 |
125.9 |
123.3 |
N20 |
C32 |
O1 |
121.5 |
125.6 |
C32 |
N20 |
H20 |
126.5 |
124.7 |
C34 |
C40 |
N21 |
126.5 |
119.2 |
C34 |
C36 |
C37 |
117.3 |
119.0 |
C34 |
C36 |
H36 |
121.4 |
120.5 |
C40 |
C22 |
N19 |
121.6 |
125.4 |
C40 |
N21 |
C38 |
116.8 |
123.1 |
C40 |
N21 |
RU |
113.4 |
99.3 |
C22 |
N19 |
RU |
112.9 |
97.1 |
N21 |
RU |
N19 |
77.9 |
95.7 |
N19 |
RU |
C12 |
96.4 |
112.1 |
N19 |
RU |
C14 |
118.7 |
112.1 |
N21 |
C38 |
H38 |
120.2 |
119.7 |
N21 |
RU |
C12 |
95.9 |
112.1 |
N21 |
RU |
C14 |
153.2 |
112.1 |
C38 |
C37 |
C36 |
123.2 |
120.0 |
C38 |
C37 |
F5 |
119.5 |
120.0 |
C37 |
C38 |
H38 |
120.2 |
119.7 |
C36 |
C37 |
F5 |
117.3 |
120.0 |
C37 |
C36 |
H36 |
121.4 |
120.5 |
C12 |
RU |
C14 |
102.4 |
111.8 |
RU |
C12 |
O13 |
178.0 |
180.0 |
RU |
C14 |
C18 |
72.5 |
110.3 |
RU |
C14 |
C3 |
121.6 |
110.3 |
C15 |
C16 |
C17 |
107.3 |
110.6 |
C16 |
C15 |
H151 |
125.8 |
126.6 |
C15 |
C16 |
H16 |
126.4 |
124.7 |
C15 |
C14 |
C3 |
124.8 |
110.4 |
C17 |
C16 |
H16 |
126.3 |
124.7 |
C16 |
C17 |
H171 |
125.4 |
124.7 |
C17 |
C18 |
H18 |
126.5 |
126.6 |
C18 |
C14 |
C3 |
127.2 |
110.3 |
C14 |
C18 |
H18 |
126.4 |
126.6 |
C14 |
C3 |
O9 |
116.8 |
120.0 |
C14 |
C3 |
N4 |
114.8 |
120.0 |
N4 |
C3 |
O9 |
128.2 |
120.0 |
C3 |
N4 |
C6 |
132.2 |
120.0 |
C3 |
N4 |
H4 |
113.9 |
120.0 |
N4 |
C6 |
H6 |
103.5 |
109.5 |
C6 |
C10 |
H101 |
109.5 |
109.4 |
C6 |
C10 |
H102 |
109.5 |
109.4 |
C6 |
C10 |
H103 |
109.4 |
109.5 |
C6 |
C7 |
O8 |
115.5 |
120.0 |
C6 |
C7 |
O11 |
121.3 |
120.0 |
C7 |
C6 |
H6 |
115.6 |
109.5 |
O8 |
C7 |
O11 |
123.1 |
120.0 |
C7 |
O8 |
H8 |
109.5 |
117.0 |
H101 |
C10 |
H102 |
109.5 |
109.4 |
H101 |
C10 |
H103 |
109.4 |
109.5 |
H102 |
C10 |
H103 |
109.5 |
109.5 |
Torsion Angles for AG1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O41 |
C31 |
N20 |
H20 |
357.4 |
359.9 |
C31 |
C30 |
C33 |
C32 |
359.0 |
360.0 |
C33 |
C32 |
N20 |
C31 |
0.1 |
360.0 |
C31 |
N20 |
C32 |
O1 |
179.7 |
180.0 |
C32 |
N20 |
C31 |
H20 |
180.0 |
180.1 |
C30 |
C29 |
C22 |
N19 |
178.3 |
180.2 |
C30 |
C33 |
C32 |
N20 |
0.6 |
0.0 |
C30 |
C33 |
C32 |
O1 |
181.0 |
180.0 |
C30 |
C33 |
C34 |
C36 |
179.6 |
180.0 |
C29 |
C28 |
C23 |
N19 |
1.9 |
0.2 |
C29 |
C28 |
C27 |
H27 |
0.1 |
359.4 |
C23 |
N19 |
C22 |
C29 |
3.7 |
0.1 |
C40 |
C22 |
C29 |
N19 |
181.7 |
179.9 |
C29 |
C22 |
N19 |
RU |
180.2 |
180.0 |
C28 |
C23 |
C24 |
H24 |
180.5 |
179.9 |
C28 |
C23 |
N19 |
C22 |
356.6 |
359.9 |
C28 |
C23 |
N19 |
RU |
181.4 |
180.0 |
C27 |
C28 |
C23 |
N19 |
181.5 |
179.8 |
C28 |
C27 |
C26 |
O2 |
180.2 |
179.7 |
C25 |
C24 |
C23 |
H24 |
180.0 |
180.1 |
C23 |
C24 |
C25 |
H25 |
180.9 |
180.0 |
C29 |
C22 |
N19 |
C23 |
3.7 |
0.1 |
N19 |
C23 |
C24 |
H24 |
356.9 |
359.9 |
C40 |
C22 |
N19 |
C23 |
182.0 |
180.2 |
C22 |
N19 |
C23 |
RU |
175.2 |
179.9 |
N21 |
RU |
N19 |
C23 |
176.6 |
179.8 |
C23 |
N19 |
RU |
C12 |
271.2 |
296.5 |
C23 |
N19 |
RU |
C14 |
19.2 |
63.2 |
C25 |
C26 |
C27 |
O2 |
180.5 |
179.7 |
C27 |
C26 |
C25 |
H25 |
178.5 |
180.3 |
C27 |
C26 |
O2 |
H2 |
67.2 |
269.7 |
C27 |
C26 |
C25 |
O2 |
179.4 |
180.3 |
C25 |
C26 |
O2 |
H2 |
246.6 |
90.0 |
C26 |
C25 |
C24 |
H24 |
181.0 |
180.0 |
C24 |
C25 |
C26 |
H25 |
180.0 |
180.1 |
O2 |
C26 |
C25 |
C24 |
179.0 |
180.1 |
O2 |
C26 |
C25 |
H25 |
359.0 |
0.0 |
C23 |
C24 |
C25 |
H24 |
180.0 |
179.9 |
C24 |
C25 |
C26 |
O2 |
179.0 |
180.1 |
C26 |
C25 |
C24 |
H25 |
180.0 |
179.9 |
C31 |
N20 |
C32 |
C33 |
0.1 |
360.0 |
C32 |
C33 |
C34 |
C36 |
4.0 |
0.1 |
N20 |
C32 |
C33 |
O1 |
179.6 |
180.0 |
C33 |
C32 |
N20 |
H20 |
180.1 |
180.1 |
C33 |
C34 |
C40 |
N21 |
182.5 |
180.0 |
C33 |
C34 |
C36 |
C37 |
179.0 |
180.1 |
C33 |
C34 |
C36 |
H36 |
359.0 |
0.0 |
C31 |
N20 |
C32 |
H20 |
180.0 |
179.9 |
C33 |
C32 |
N20 |
O1 |
180.4 |
180.0 |
C33 |
C32 |
O1 |
N20 |
179.6 |
180.0 |
O1 |
C32 |
N20 |
H20 |
359.7 |
0.1 |
C34 |
C40 |
C22 |
N19 |
181.2 |
179.9 |
C34 |
C40 |
N21 |
C38 |
356.9 |
359.9 |
C34 |
C40 |
N21 |
RU |
180.1 |
180.0 |
C36 |
C34 |
C40 |
N21 |
1.4 |
360.0 |
C38 |
C37 |
C36 |
C34 |
0.1 |
359.9 |
C34 |
C36 |
C37 |
F5 |
180.8 |
180.0 |
C37 |
C36 |
C34 |
H36 |
180.0 |
180.1 |
C29 |
C22 |
C40 |
N19 |
178.1 |
180.1 |
C23 |
N19 |
C22 |
C40 |
182.0 |
180.2 |
C40 |
C22 |
N19 |
RU |
358.5 |
0.1 |
N21 |
C40 |
C22 |
N19 |
0.3 |
359.9 |
C40 |
N21 |
RU |
N19 |
358.6 |
360.0 |
C40 |
N21 |
C38 |
H38 |
183.1 |
180.0 |
C40 |
N21 |
RU |
C12 |
263.3 |
243.3 |
C40 |
N21 |
RU |
C14 |
130.2 |
116.6 |
C23 |
N19 |
C22 |
RU |
183.5 |
180.1 |
N21 |
RU |
N19 |
C22 |
1.5 |
360.0 |
C22 |
N19 |
RU |
C12 |
96.2 |
116.6 |
C22 |
N19 |
RU |
C14 |
204.2 |
243.3 |
C23 |
N19 |
RU |
C22 |
175.0 |
179.9 |
N21 |
RU |
N19 |
C12 |
265.3 |
243.3 |
N21 |
RU |
N19 |
C14 |
157.4 |
116.6 |
C12 |
RU |
N19 |
C14 |
252.0 |
233.3 |
N19 |
RU |
C12 |
O13 |
325.7 |
3.5 |
N19 |
RU |
C14 |
C18 |
71.0 |
286.2 |
N19 |
RU |
C14 |
C3 |
307.6 |
164.2 |
C40 |
N21 |
C38 |
RU |
183.8 |
180.1 |
C37 |
C38 |
N21 |
H38 |
180.0 |
180.0 |
C23 |
N19 |
RU |
N21 |
176.6 |
179.8 |
C40 |
N21 |
RU |
C38 |
176.3 |
179.9 |
C22 |
N19 |
RU |
N21 |
1.5 |
360.0 |
N19 |
RU |
N21 |
C12 |
95.3 |
116.7 |
N19 |
RU |
N21 |
C14 |
228.4 |
243.4 |
RU |
N21 |
C38 |
H38 |
359.3 |
360.0 |
C12 |
RU |
N21 |
C14 |
133.1 |
126.7 |
N21 |
RU |
C12 |
O13 |
44.1 |
109.9 |
N21 |
RU |
C14 |
C18 |
307.4 |
179.9 |
N21 |
RU |
C14 |
C3 |
184.1 |
57.8 |
C34 |
C36 |
C37 |
C38 |
0.1 |
359.9 |
C40 |
N21 |
C38 |
C37 |
3.1 |
0.1 |
N21 |
C38 |
C37 |
H38 |
180.0 |
180.0 |
C36 |
C37 |
C38 |
F5 |
180.7 |
180.1 |
C38 |
C37 |
C36 |
H36 |
180.1 |
180.0 |
C34 |
C36 |
C37 |
H36 |
180.0 |
179.9 |
C38 |
C37 |
C36 |
F5 |
179.3 |
179.9 |
C36 |
C37 |
C38 |
H38 |
178.2 |
180.0 |
C38 |
C37 |
F5 |
C36 |
180.6 |
180.1 |
F5 |
C37 |
C38 |
H38 |
357.5 |
360.0 |
F5 |
C37 |
C36 |
H36 |
0.8 |
0.1 |
N21 |
RU |
C12 |
N19 |
78.4 |
106.3 |
N19 |
RU |
C12 |
C14 |
121.3 |
126.8 |
N21 |
RU |
C12 |
C14 |
199.7 |
233.2 |
C12 |
RU |
C14 |
C18 |
175.5 |
53.1 |
C12 |
RU |
C14 |
C3 |
52.2 |
291.0 |
N21 |
RU |
C14 |
N19 |
236.5 |
253.7 |
N19 |
RU |
C14 |
C12 |
255.5 |
233.2 |
N21 |
RU |
C14 |
C12 |
131.9 |
126.8 |
C14 |
RU |
C12 |
O13 |
204.4 |
236.7 |
C15 |
C14 |
RU |
C3 |
239.4 |
237.7 |
C18 |
C14 |
RU |
C3 |
123.3 |
122.1 |
RU |
C14 |
C18 |
H18 |
244.5 |
298.9 |
RU |
C14 |
C3 |
O9 |
90.0 |
222.0 |
RU |
C14 |
C3 |
N4 |
273.8 |
42.0 |
C16 |
C15 |
C14 |
C3 |
178.7 |
118.9 |
C17 |
C16 |
C15 |
H16 |
180.0 |
179.8 |
C15 |
C16 |
C17 |
H171 |
180.0 |
180.1 |
RU |
C14 |
C15 |
C3 |
116.9 |
122.2 |
C18 |
C14 |
C15 |
C3 |
181.2 |
241.1 |
C15 |
C14 |
C18 |
H18 |
180.0 |
180.0 |
C15 |
C14 |
C3 |
O9 |
180.1 |
344.3 |
C15 |
C14 |
C3 |
N4 |
3.9 |
164.2 |
C17 |
C16 |
C15 |
H151 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.2 |
C16 |
C17 |
C18 |
H18 |
180.0 |
179.9 |
C17 |
C18 |
C14 |
C3 |
181.3 |
241.2 |
C14 |
C18 |
C17 |
H18 |
180.0 |
179.8 |
RU |
C14 |
C18 |
C3 |
243.2 |
237.9 |
C15 |
C14 |
C18 |
C3 |
178.7 |
119.0 |
C17 |
C18 |
C14 |
H18 |
180.0 |
180.2 |
C18 |
C14 |
C3 |
O9 |
358.6 |
99.9 |
C18 |
C14 |
C3 |
N4 |
182.4 |
279.9 |
O13 |
C12 |
RU |
C14 |
204.4 |
236.7 |
RU |
C14 |
C3 |
C18 |
91.3 |
122.1 |
C3 |
C14 |
C18 |
H18 |
1.3 |
61.0 |
N4 |
C3 |
C14 |
O9 |
183.8 |
179.9 |
C14 |
C3 |
N4 |
C6 |
184.6 |
184.7 |
C14 |
C3 |
N4 |
H4 |
4.6 |
4.8 |
C14 |
C3 |
O9 |
N4 |
184.4 |
179.9 |
O9 |
C3 |
N4 |
C6 |
8.9 |
4.7 |
O9 |
C3 |
N4 |
H4 |
188.9 |
184.7 |
C14 |
C3 |
N4 |
O9 |
175.7 |
180.1 |
C3 |
N4 |
C6 |
H6 |
122.1 |
325.3 |
C6 |
N4 |
C3 |
O9 |
8.9 |
4.7 |
C3 |
N4 |
C6 |
H4 |
180.0 |
180.1 |
N4 |
C6 |
C10 |
H101 |
84.8 |
180.0 |
N4 |
C6 |
C10 |
H102 |
204.8 |
299.9 |
N4 |
C6 |
C10 |
H103 |
324.8 |
60.0 |
N4 |
C6 |
C7 |
O8 |
282.5 |
158.1 |
N4 |
C6 |
C7 |
O11 |
100.1 |
338.1 |
C7 |
C6 |
N4 |
H6 |
237.8 |
240.0 |
C3 |
N4 |
C6 |
C10 |
225.9 |
85.3 |
H101 |
C10 |
C6 |
H102 |
240.0 |
240.1 |
H101 |
C10 |
C6 |
H103 |
120.0 |
120.1 |
H102 |
C10 |
C6 |
H103 |
240.0 |
239.9 |
C3 |
N4 |
C6 |
C7 |
359.9 |
205.3 |
N4 |
C6 |
C7 |
H6 |
114.2 |
120.0 |
C7 |
C6 |
C10 |
H101 |
313.8 |
60.1 |
C7 |
C6 |
C10 |
H102 |
73.8 |
180.0 |
C7 |
C6 |
C10 |
H103 |
193.8 |
300.0 |
O8 |
C7 |
C6 |
O11 |
182.4 |
180.0 |
C6 |
C7 |
O8 |
H8 |
177.6 |
179.9 |
C6 |
C7 |
O8 |
O11 |
177.6 |
180.0 |
O8 |
C7 |
C6 |
H6 |
168.3 |
38.0 |
C6 |
C7 |
O11 |
O8 |
182.5 |
180.0 |
O11 |
C7 |
C6 |
H6 |
345.9 |
218.1 |
O11 |
C7 |
O8 |
H8 |
360.0 |
359.9 |
C31 |
N20 |
H20 |
C32 |
180.0 |
180.1 |
H20 |
N20 |
C32 |
O1 |
359.7 |
0.1 |
H27 |
C27 |
C26 |
O2 |
0.2 |
0.3 |
H24 |
C24 |
C25 |
H25 |
1.0 |
0.1 |
H25 |
C25 |
C26 |
O2 |
359.0 |
0.0 |
C26 |
C25 |
H25 |
C24 |
180.0 |
180.1 |
H25 |
C25 |
C24 |
H24 |
1.0 |
0.1 |
C34 |
C36 |
H36 |
C37 |
180.0 |
180.1 |
H36 |
C36 |
C37 |
F5 |
0.8 |
0.1 |
H38 |
C38 |
C37 |
C36 |
178.2 |
180.0 |
H38 |
C38 |
C37 |
F5 |
357.5 |
360.0 |
H151 |
C15 |
C16 |
C17 |
180.0 |
180.0 |
H151 |
C15 |
C16 |
H16 |
0.1 |
0.2 |
H151 |
C15 |
C14 |
C3 |
358.7 |
298.7 |
C15 |
C16 |
H16 |
C17 |
180.0 |
179.8 |
H16 |
C16 |
C15 |
H151 |
0.1 |
0.2 |
H16 |
C16 |
C17 |
H171 |
360.0 |
359.9 |
H171 |
C17 |
C16 |
H16 |
360.0 |
359.9 |
H171 |
C17 |
C18 |
H18 |
360.0 |
0.2 |
H18 |
C18 |
C14 |
C3 |
1.3 |
61.0 |
H4 |
N4 |
C3 |
O9 |
188.9 |
184.7 |
C3 |
N4 |
H4 |
C6 |
180.0 |
179.9 |
H4 |
N4 |
C6 |
H6 |
302.1 |
145.3 |
H6 |
C6 |
C10 |
H101 |
193.6 |
300.1 |
H6 |
C6 |
C10 |
H102 |
313.7 |
59.9 |
H6 |
C6 |
C10 |
H103 |
73.7 |
180.0 |
H6 |
C6 |
C7 |
O8 |
168.3 |
38.0 |
H6 |
C6 |
C7 |
O11 |
345.9 |
218.1 |
C6 |
C10 |
H101 |
H102 |
120.0 |
119.9 |
C6 |
C10 |
H101 |
H103 |
240.0 |
240.0 |
H102 |
C10 |
H101 |
H103 |
120.0 |
120.1 |
C6 |
C10 |
H102 |
H101 |
240.0 |
240.1 |
C6 |
C10 |
H102 |
H103 |
120.0 |
120.0 |
H101 |
C10 |
H102 |
H103 |
240.0 |
239.9 |
C6 |
C10 |
H103 |
H101 |
120.0 |
120.0 |
C6 |
C10 |
H103 |
H102 |
240.0 |
240.0 |
H101 |
C10 |
H103 |
H102 |
120.0 |
120.0 |
H8 |
O8 |
C7 |
O11 |
360.0 |
359.9 |