PDB Chemical Component AFS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AFS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CB1 |
CA1 |
1.490 |
1.530 |
| CA1 |
N1 |
1.437 |
1.469 |
| CA1 |
C1 |
1.489 |
1.507 |
| O23 |
P |
1.496 |
1.480 |
| N2 |
C1 |
1.431 |
1.347 |
| N2 |
CA2 |
1.433 |
1.465 |
| C1 |
O1 |
1.222 |
1.213 |
| P |
O22 |
1.496 |
1.610 |
| P |
CA2 |
1.825 |
1.824 |
| P |
O21 |
1.496 |
1.610 |
| CA2 |
CB2 |
1.494 |
1.530 |
| N1 |
H1 |
1.000 |
1.009 |
| N1 |
H2 |
1.000 |
1.009 |
| CA1 |
H4 |
1.100 |
1.091 |
| CB1 |
H5 |
1.100 |
1.090 |
| CB1 |
H6 |
1.100 |
1.090 |
| CB1 |
H7 |
1.100 |
1.089 |
| N2 |
H8 |
1.000 |
0.970 |
| CA2 |
H9 |
1.100 |
1.090 |
| CB2 |
H10 |
1.100 |
1.090 |
| CB2 |
H11 |
1.100 |
1.090 |
| CB2 |
H12 |
1.100 |
1.090 |
| O21 |
H13 |
0.950 |
0.967 |
| O22 |
H14 |
0.950 |
0.967 |
Bond Angles for AFS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB1 |
CA1 |
H4 |
109.1 |
109.4 |
| CA1 |
N1 |
H1 |
109.5 |
111.0 |
| CA1 |
N1 |
H2 |
109.5 |
110.9 |
| C1 |
CA1 |
H4 |
109.1 |
109.5 |
| N2 |
CA2 |
CB2 |
109.8 |
109.5 |
| CA2 |
N2 |
H8 |
119.9 |
120.0 |
| N2 |
CA2 |
H9 |
111.0 |
109.5 |
| O21 |
P |
O22 |
104.0 |
109.5 |
| P |
O22 |
H14 |
109.5 |
114.0 |
| P |
CA2 |
H9 |
106.3 |
109.5 |
| P |
O21 |
H13 |
109.5 |
114.0 |
| CB2 |
CA2 |
H9 |
110.1 |
109.5 |
| CA2 |
CB2 |
H10 |
109.5 |
109.4 |
| CA2 |
CB2 |
H11 |
109.5 |
109.5 |
| CA2 |
CB2 |
H12 |
109.5 |
109.5 |
| H1 |
N1 |
H2 |
109.5 |
111.0 |
| H5 |
CB1 |
H6 |
109.5 |
109.4 |
| H5 |
CB1 |
H7 |
109.4 |
109.5 |
| H6 |
CB1 |
H7 |
109.4 |
109.5 |
| H10 |
CB2 |
H11 |
109.5 |
109.4 |
| H10 |
CB2 |
H12 |
109.5 |
109.5 |
| H11 |
CB2 |
H12 |
109.4 |
109.5 |
Torsion Angles for AFS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB1 |
CA1 |
N1 |
H1 |
180.0 |
60.0 |
| CB1 |
CA1 |
N1 |
H2 |
300.0 |
183.9 |
| C1 |
CA1 |
CB1 |
H4 |
119.3 |
120.0 |
| H1 |
N1 |
CA1 |
H2 |
239.9 |
236.1 |
| CB1 |
CA1 |
C1 |
H4 |
240.7 |
240.0 |
| C1 |
CA1 |
N1 |
H1 |
300.2 |
180.0 |
| C1 |
CA1 |
N1 |
H2 |
60.2 |
303.9 |
| O23 |
P |
O22 |
H14 |
360.0 |
180.0 |
| O23 |
P |
CA2 |
H9 |
206.7 |
305.0 |
| O23 |
P |
O21 |
H13 |
0.0 |
300.0 |
| N2 |
C1 |
CA1 |
H4 |
14.9 |
60.0 |
| P |
CA2 |
N2 |
H9 |
242.6 |
240.0 |
| CB2 |
CA2 |
N2 |
H9 |
122.0 |
120.1 |
| N2 |
CA2 |
CB2 |
H10 |
180.0 |
300.0 |
| N2 |
CA2 |
CB2 |
H11 |
300.0 |
59.9 |
| N2 |
CA2 |
CB2 |
H12 |
60.0 |
180.0 |
| O22 |
P |
CA2 |
H9 |
327.2 |
185.0 |
| O22 |
P |
O21 |
H13 |
250.6 |
60.0 |
| P |
CA2 |
N2 |
H8 |
91.3 |
75.0 |
| N2 |
CA2 |
P |
H9 |
120.3 |
120.0 |
| CB2 |
CA2 |
P |
H9 |
241.0 |
240.0 |
| P |
CA2 |
CB2 |
H10 |
59.1 |
180.0 |
| P |
CA2 |
CB2 |
H11 |
179.2 |
300.0 |
| P |
CA2 |
CB2 |
H12 |
299.1 |
60.0 |
| O21 |
P |
O22 |
H14 |
109.3 |
60.0 |
| O21 |
P |
CA2 |
H9 |
86.8 |
65.0 |
| CB2 |
CA2 |
N2 |
H8 |
330.6 |
315.1 |
| N2 |
CA2 |
CB2 |
H9 |
237.5 |
239.9 |
| P |
CA2 |
CB2 |
H9 |
116.6 |
120.0 |
| H10 |
CB2 |
CA2 |
H11 |
239.9 |
240.0 |
| H10 |
CB2 |
CA2 |
H12 |
120.0 |
120.0 |
| H11 |
CB2 |
CA2 |
H12 |
240.1 |
240.0 |
| CA1 |
N1 |
H1 |
H2 |
120.0 |
123.9 |
| CA1 |
N1 |
H2 |
H1 |
239.9 |
236.1 |
| H4 |
CA1 |
N1 |
H1 |
59.7 |
300.1 |
| H4 |
CA1 |
N1 |
H2 |
179.8 |
64.0 |
| H5 |
CB1 |
CA1 |
H4 |
300.6 |
180.0 |
| H6 |
CB1 |
H5 |
H7 |
120.0 |
120.0 |
| H6 |
CB1 |
CA1 |
H4 |
60.7 |
299.9 |
| H5 |
CB1 |
H6 |
H7 |
240.0 |
240.0 |
| H7 |
CB1 |
CA1 |
H4 |
180.6 |
60.0 |
| H5 |
CB1 |
H7 |
H6 |
120.0 |
120.0 |
| H8 |
N2 |
CA2 |
CB2 |
330.6 |
315.1 |
| H8 |
N2 |
CA2 |
H9 |
208.7 |
195.0 |
| N2 |
CA2 |
H9 |
CB2 |
121.8 |
120.1 |
| H9 |
CA2 |
N2 |
H8 |
208.7 |
195.0 |
| H9 |
CA2 |
CB2 |
H10 |
302.5 |
60.0 |
| H9 |
CA2 |
CB2 |
H11 |
62.6 |
180.0 |
| H9 |
CA2 |
CB2 |
H12 |
182.5 |
300.0 |
| H10 |
CB2 |
CA2 |
H9 |
302.5 |
60.0 |
| CA2 |
CB2 |
H10 |
H11 |
120.0 |
120.0 |
| CA2 |
CB2 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
CB2 |
H10 |
H12 |
120.0 |
120.0 |
| H11 |
CB2 |
CA2 |
H9 |
62.6 |
180.0 |
| CA2 |
CB2 |
H11 |
H10 |
239.9 |
240.0 |
| CA2 |
CB2 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
CB2 |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
CB2 |
CA2 |
H9 |
182.5 |
300.0 |
| CA2 |
CB2 |
H12 |
H10 |
120.0 |
120.0 |
| CA2 |
CB2 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
CB2 |
H12 |
H11 |
120.0 |
120.0 |
| H13 |
O21 |
P |
O22 |
250.6 |
60.0 |