PDB Chemical Component AFP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AFP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P1	O1P	1.479	1.480
P1	O2P	1.488	1.610
P1	O3P	1.595	1.610
P1	O1	1.598	1.610
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967
O1	C1	1.419	1.428
C1	C2	1.513	1.530
C1	H11	1.115	1.090
C1	H12	1.115	1.090
C2	O2	1.405	1.428
C2	C3	1.522	1.544
C2	O5	1.449	1.443
O2	HO2	0.950	0.968
C3	O3	1.414	1.429
C3	C4	1.536	1.544
C3	H3	1.115	1.090
O3	HO3	0.950	0.967
C4	O4	1.424	1.428
C4	C5	1.537	1.544
C4	H4	1.115	1.090
O4	HO4	0.950	0.967
C5	O5	1.428	1.446
C5	C6	1.508	1.529
C5	H5	1.115	1.090
C6	O6	1.434	1.428
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	P6	1.634	1.609
P6	O4P	1.525	1.480
P6	O5P	1.527	1.609
P6	O6P	1.512	1.610
O5P	HOP5	0.950	0.968
O6P	HOP6	0.950	0.967

Bond Angles for AFP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1P	P1	O2P	119.3	109.5
O1P	P1	O3P	106.5	109.4
O1P	P1	O1	110.9	109.5
O2P	P1	O3P	110.2	109.4
O2P	P1	O1	104.4	109.5
P1	O2P	HOP2	119.3	106.8
O3P	P1	O1	104.5	109.4
P1	O3P	HOP3	106.5	106.8
P1	O1	C1	121.8	106.9
O1	C1	C2	108.4	109.5
O1	C1	H11	112.6	109.5
O1	C1	H12	112.6	109.5
C2	C1	H11	112.6	109.4
C2	C1	H12	112.6	109.5
C1	C2	O2	108.2	110.3
C1	C2	C3	115.6	110.4
C1	C2	O5	107.5	110.4
H11	C1	H12	97.8	109.5
O2	C2	C3	109.6	110.4
O2	C2	O5	110.7	110.4
C2	O2	HO2	108.2	106.8
C3	C2	O5	105.3	104.8
C2	C3	O3	110.2	110.7
C2	C3	C4	102.5	104.0
C2	C3	H3	115.6	110.5
C2	O5	C5	111.4	105.4
O3	C3	C4	115.0	110.5
O3	C3	H3	103.2	110.4
C3	O3	HO3	110.2	106.8
C4	C3	H3	110.9	110.5
C3	C4	O4	115.8	110.5
C3	C4	C5	102.1	104.2
C3	C4	H4	110.5	110.5
O4	C4	C5	109.8	110.6
O4	C4	H4	102.8	110.4
C4	O4	HO4	115.9	106.9
C5	C4	H4	116.4	110.5
C4	C5	O5	105.1	104.7
C4	C5	C6	111.9	110.7
C4	C5	H5	111.3	110.2
O5	C5	C6	110.8	110.4
O5	C5	H5	112.4	110.3
C6	C5	H5	105.5	110.3
C5	C6	O6	108.0	109.6
C5	C6	H61	112.8	109.5
C5	C6	H62	112.8	109.5
O6	C6	H61	112.8	109.5
O6	C6	H62	112.8	109.5
C6	O6	P6	121.1	106.9
H61	C6	H62	97.7	109.4
O6	P6	O4P	107.5	109.5
O6	P6	O5P	108.5	109.5
O6	P6	O6P	101.8	109.5
O4P	P6	O5P	111.9	109.4
O4P	P6	O6P	114.3	109.4
O5P	P6	O6P	112.1	109.5
P6	O5P	HOP5	108.5	106.8
P6	O6P	HOP6	101.7	106.8

Torsion Angles for AFP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2P	P1	O1P	O3P	234.5	119.9
O2P	P1	O1P	O1	121.3	239.9
O1P	P1	O2P	HOP2	180.0	300.1
O3P	P1	O1P	O1	246.8	119.9
O1P	P1	O3P	HOP3	180.0	180.0
O1P	P1	O1	C1	268.9	60.0
O1P	P1	O2P	O3P	123.7	240.0
O1P	P1	O2P	O1	235.5	120.1
O3P	P1	O2P	O1	111.8	240.0
O2P	P1	O3P	HOP3	310.8	60.0
O2P	P1	O1	C1	139.2	180.1
O1P	P1	O3P	O2P	229.2	120.0
O1P	P1	O3P	O1	117.5	240.0
O2P	P1	O3P	O1	248.3	120.0
O3P	P1	O2P	HOP2	56.3	60.1
O3P	P1	O1	C1	23.4	300.0
O1P	P1	O1	O2P	129.7	239.9
O1P	P1	O1	O3P	245.5	119.9
O2P	P1	O1	O3P	115.9	240.0
O1	P1	O2P	HOP2	304.5	180.0
O1	P1	O3P	HOP3	62.5	300.0
P1	O1	C1	C2	248.2	180.0
P1	O1	C1	H11	122.9	60.0
P1	O1	C1	H12	13.4	300.1
HOP2	O2P	P1	O3P	56.3	60.1
HOP2	O2P	P1	O1	304.5	180.0
HOP3	O3P	P1	O1	62.5	300.0
C2	C1	O1	H11	125.3	120.0
C2	C1	O1	H12	234.8	239.9
O1	C1	C2	O2	48.9	57.8
O1	C1	C2	C3	172.1	180.0
O1	C1	C2	O5	289.4	295.5
H11	C1	O1	H12	109.5	120.0
O1	C1	C2	H11	234.7	240.0
O1	C1	C2	H12	125.3	120.0
H11	C1	C2	H12	250.6	240.0
O2	C2	C1	C3	236.8	237.8
O2	C2	C1	O5	119.5	122.3
C1	C2	O2	HO2	180.0	302.2
C3	C2	C1	O5	242.8	244.5
C1	C2	C3	O3	326.4	24.2
C1	C2	C3	C4	89.2	143.0
C1	C2	C3	H3	209.9	261.6
C1	C2	O5	C5	246.3	200.7
O1	C1	H11	C2	123.0	120.0
O1	C1	H11	H12	241.5	240.0
C2	C1	H11	H12	118.5	120.0
H11	C1	C2	O2	174.2	177.7
H11	C1	C2	C3	297.4	300.0
H11	C1	C2	O5	54.6	55.5
O1	C1	H12	C2	237.0	239.9
O1	C1	H12	H11	118.5	120.0
C2	C1	H12	H11	241.5	240.0
H12	C1	C2	O2	283.6	297.7
H12	C1	C2	C3	46.9	60.0
H12	C1	C2	O5	164.1	175.4
O2	C2	C1	H11	174.2	177.7
O2	C2	C1	H12	283.6	297.7
C1	C2	O2	C3	126.8	122.2
C1	C2	O2	O5	242.5	237.7
C3	C2	O2	O5	115.7	115.5
O2	C2	C3	O3	88.9	146.4
O2	C2	C3	C4	211.7	265.1
O2	C2	C3	H3	332.4	23.8
O2	C2	O5	C5	128.4	78.5
C3	C2	C1	H11	297.4	300.0
C3	C2	C1	H12	46.9	60.0
C1	C2	C3	O2	237.5	237.8
C1	C2	C3	O5	118.4	118.9
O2	C2	C3	O5	240.9	241.1
C3	C2	O2	HO2	53.2	180.0
C3	C2	O5	C5	10.0	319.6
O3	C3	C2	C4	237.2	241.3
O3	C3	C2	H3	116.5	122.6
C2	C3	O3	HO3	180.0	176.2
C4	C3	C2	H3	239.3	241.3
C2	C3	C4	O4	155.7	118.7
C2	C3	C4	C5	36.5	359.9
C2	C3	C4	H4	272.0	241.2
O5	C2	C1	H11	54.6	55.5
O5	C2	C1	H12	164.1	175.4
C1	C2	O5	O2	117.9	122.2
C1	C2	O5	C3	236.3	241.1
O2	C2	O5	C3	118.3	118.9
O5	C2	O2	HO2	297.5	64.5
O5	C2	C3	O3	208.0	265.3
O5	C2	C3	C4	330.8	24.0
O5	C2	C3	H3	91.5	142.7
C4	C5	O5	C2	13.6	40.3
C2	O5	C5	C6	134.7	159.5
C2	O5	C5	H5	252.5	281.7
HO2	O2	C2	C3	53.2	180.0
HO2	O2	C2	O5	297.5	64.5
O3	C3	C2	O5	208.0	265.3
C2	C3	O3	C4	115.2	114.7
C2	C3	O3	H3	236.0	237.3
C4	C3	O3	H3	120.8	122.6
O3	C3	C4	O4	275.2	237.5
O3	C3	C4	C5	156.0	118.7
O3	C3	C4	H4	31.6	360.0
C4	C3	C2	O5	330.8	24.0
C2	C3	C4	O3	240.5	241.2
C2	C3	C4	H3	123.9	118.7
O3	C3	C4	H3	243.5	237.5
C4	C3	O3	HO3	64.9	61.5
O4	C4	C3	C5	119.2	118.8
O4	C4	C3	H4	243.7	237.5
C3	C4	O4	HO4	180.0	63.3
C5	C4	C3	H4	124.5	118.7
C3	C4	C5	O5	328.8	336.3
C3	C4	C5	C6	208.5	217.3
C3	C4	C5	H5	90.7	94.9
H3	C3	C2	O5	91.5	142.7
C2	C3	H3	O3	120.4	122.7
C2	C3	H3	C4	244.0	245.4
O3	C3	H3	C4	123.6	122.6
H3	C3	O3	HO3	304.0	298.8
H3	C3	C4	O4	31.8	0.0
H3	C3	C4	C5	272.6	241.2
H3	C3	C4	H4	148.1	122.5
HO3	O3	C3	C4	64.9	61.5
HO3	O3	C3	H3	304.0	298.8
O4	C4	C3	H3	31.8	0.0
C3	C4	O4	C5	245.1	245.1
C3	C4	O4	H4	120.6	122.5
C5	C4	O4	H4	235.4	237.4
O4	C4	C5	O5	205.4	217.5
O4	C4	C5	C6	85.1	98.5
O4	C4	C5	H5	327.3	336.1
C2	O5	C5	C4	13.6	40.3
C5	C4	C3	H3	272.6	241.2
C3	C4	C5	O4	123.4	118.8
C3	C4	C5	H4	239.6	241.3
O4	C4	C5	H4	116.3	122.6
C5	C4	O4	HO4	294.9	178.1
O5	C5	C4	C6	120.3	119.0
O5	C5	C4	H5	238.1	241.4
C6	C5	C4	H5	117.8	122.4
C4	C5	C6	O6	185.1	176.9
C4	C5	C6	H61	59.9	297.0
C4	C5	C6	H62	310.4	56.9
H4	C4	C3	H3	148.1	122.5
C3	C4	H4	O4	235.8	237.4
C3	C4	H4	C5	115.8	114.8
O4	C4	H4	C5	239.9	237.3
H4	C4	O4	HO4	59.4	300.7
H4	C4	C5	O5	89.2	94.9
H4	C4	C5	C6	328.9	335.9
H4	C4	C5	H5	211.0	213.6
HO4	O4	C4	C5	294.9	178.1
HO4	O4	C4	H4	59.4	300.7
O5	C5	C4	H4	89.2	94.9
C4	C5	O5	C6	238.9	240.8
C4	C5	O5	H5	121.1	118.6
C6	C5	O5	H5	242.2	237.8
O5	C5	C6	O6	68.2	61.4
O5	C5	C6	H61	303.0	181.5
O5	C5	C6	H62	193.5	301.4
C6	C5	C4	H4	328.9	335.9
C4	C5	C6	O5	116.9	115.5
C4	C5	C6	H5	238.8	237.7
O5	C5	C6	H5	121.9	122.2
O6	C6	C5	H61	125.3	239.9
O6	C6	C5	H62	234.8	120.0
C5	C6	O6	P6	152.0	180.0
H61	C6	C5	H62	109.5	240.1
H5	C5	C4	H4	211.0	213.6
C4	C5	H5	O5	242.5	244.9
C4	C5	H5	C6	121.6	122.6
O5	C5	H5	C6	239.1	237.7
H5	C5	C6	O6	306.3	299.2
H5	C5	C6	H61	181.1	59.3
H5	C5	C6	H62	71.6	179.2
O6	C6	C5	H5	306.3	299.2
C5	C6	O6	H61	234.7	120.1
C5	C6	O6	H62	125.3	240.0
H61	C6	O6	H62	250.5	119.9
C6	O6	P6	O4P	51.3	60.0
C6	O6	P6	O5P	290.1	180.0
C6	O6	P6	O6P	171.8	300.0
H61	C6	C5	H5	181.1	59.3
C5	C6	H61	O6	122.6	239.9
C5	C6	H61	H62	241.3	119.9
O6	C6	H61	H62	118.7	240.1
H61	C6	O6	P6	277.3	60.0
H62	C6	C5	H5	71.6	179.2
C5	C6	H62	O6	237.4	120.1
C5	C6	H62	H61	118.7	240.0
O6	C6	H62	H61	241.3	120.0
H62	C6	O6	P6	26.8	300.0
P6	O6	C6	H61	277.3	60.0
P6	O6	C6	H62	26.8	300.0
O4P	P6	O6	O5P	121.2	240.0
O4P	P6	O6	O6P	239.6	119.9
O5P	P6	O6	O6P	118.3	239.9
O6	P6	O5P	HOP5	180.0	180.0
O6	P6	O6P	HOP6	180.0	299.9
O6	P6	O4P	O5P	241.0	120.0
O6	P6	O4P	O6P	112.1	240.0
O5P	P6	O4P	O6P	231.2	120.0
O4P	P6	O5P	HOP5	61.5	300.0
O4P	P6	O6P	HOP6	295.5	180.0
O6	P6	O5P	O4P	118.5	240.0
O6	P6	O5P	O6P	248.4	120.1
O4P	P6	O5P	O6P	130.0	240.1
O5P	P6	O6P	HOP6	64.3	60.0
O6	P6	O6P	O4P	244.5	120.0
O6	P6	O6P	O5P	115.7	239.9
O4P	P6	O6P	O5P	231.3	120.0
O6P	P6	O5P	HOP5	291.6	59.9
HOP5	O5P	P6	O6P	291.6	59.9