PDB Chemical Component AFJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AFJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.824 1.814
S1 C79 1.819 1.815
C5 C2 1.552 1.530
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
C5 C8 1.562 1.530
C5 H5 1.101 1.090
C5 H5A 1.100 1.090
C30 C8 1.518 1.507
C8 N10 1.469 1.465
C8 H8 1.100 1.091
N10 C12 1.362 1.348
N10 HN10 1.000 0.970
C12 O13 1.229 1.213
C12 C14 1.512 1.506
C14 C17 1.555 1.530
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C20 C17 1.559 1.530
C17 H17 1.101 1.090
C17 H17A 1.099 1.089
C26 C20 1.551 1.530
C20 C22 1.553 1.530
C20 H20 1.100 1.090
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
C22 H22B 1.100 1.089
C26 H26 1.100 1.091
C26 H26A 1.100 1.090
C26 H26B 1.099 1.089
O31 C30 1.232 1.213
C30 N32 1.361 1.347
C34 N32 1.472 1.464
N32 HN32 1.000 0.971
C36 C34 1.561 1.530
C34 C66 1.561 1.531
C34 H34 1.100 1.089
C40 C36 1.566 1.531
C36 O38 1.440 1.429
C36 H36 1.100 1.089
O38 HO38 0.950 0.967
C43 C40 1.558 1.530
C40 H40 1.100 1.091
C40 H40A 1.100 1.090
C49 C43 1.518 1.507
C45 C43 1.552 1.530
C43 H43 1.100 1.091
C45 H45 1.100 1.090
C45 H45A 1.100 1.089
C45 H45B 1.100 1.090
N51 C49 1.351 1.348
O50 C49 1.225 1.212
C53 N51 1.458 1.465
N51 HN51 1.000 0.970
C56 C53 1.544 1.530
C53 H53 1.100 1.090
C53 H53A 1.100 1.090
C59 C56 1.545 1.530
C56 H56 1.100 1.090
C56 H56A 1.100 1.090
C62 C59 1.542 1.531
C59 H59 1.100 1.090
C59 H59A 1.100 1.090
C62 H62 1.100 1.091
C62 H62A 1.100 1.090
C62 H62B 1.100 1.090
C66 C69 1.566 1.530
C66 H66 1.100 1.090
C66 H66A 1.100 1.090
C71 C69 1.556 1.529
C69 C75 1.556 1.530
C69 H69 1.100 1.090
C71 H71 1.100 1.090
C71 H71A 1.100 1.090
C71 H71B 1.100 1.090
C75 H75 1.100 1.090
C75 H75A 1.100 1.090
C75 H75B 1.101 1.090
C79 H79 1.100 1.090
C79 H79A 1.100 1.090
C79 H79B 1.101 1.090

Bond Angles for AFJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C79 99.6 103.0
S1 C2 H2 109.2 109.5
S1 C2 H2A 109.0 109.5
S1 C79 H79 109.5 109.4
S1 C79 H79A 109.4 109.4
S1 C79 H79B 109.4 109.5
C5 C2 H2 109.2 109.4
C5 C2 H2A 108.9 109.4
H2 C2 H2A 110.2 109.4
C8 C5 H5 108.2 109.5
C8 C5 H5A 107.4 109.5
C5 C8 N10 110.8 109.5
C5 C8 H8 106.1 109.5
H5 C5 H5A 112.5 109.4
C30 C8 H8 108.1 109.4
N10 C8 H8 110.1 109.5
C8 N10 C12 123.7 120.0
C8 N10 HN10 118.1 120.0
C12 N10 HN10 118.1 120.0
N10 C12 O13 124.3 120.0
N10 C12 C14 116.0 120.0
O13 C12 C14 119.7 120.0
C12 C14 C17 114.0 109.5
C12 C14 H14 108.0 109.5
C12 C14 H14A 107.0 109.5
C17 C14 H14 108.0 109.5
C17 C14 H14A 107.0 109.5
C14 C17 H17 107.4 109.4
C14 C17 H17A 106.0 109.5
H14 C14 H14A 113.1 109.4
C20 C17 H17 107.4 109.4
C20 C17 H17A 106.0 109.5
H17 C17 H17A 114.6 109.5
C26 C20 H20 110.3 109.4
C22 C20 H20 109.5 109.5
C20 C22 H22 109.5 109.5
C20 C22 H22A 109.5 109.4
C20 C22 H22B 109.4 109.5
H22 C22 H22A 109.4 109.5
H22 C22 H22B 109.5 109.5
H22A C22 H22B 109.5 109.5
H26 C26 H26A 109.4 109.4
H26 C26 H26B 109.5 109.5
H26A C26 H26B 109.5 109.5
O31 C30 N32 122.5 120.0
C30 N32 HN32 118.4 119.9
C34 N32 HN32 118.4 120.0
C36 C34 C66 115.6 109.4
C36 C34 H34 105.3 109.5
C66 C34 H34 104.1 109.5
C34 C66 C69 115.3 109.5
C34 C66 H66 107.6 109.5
C34 C66 H66A 106.3 109.5
C40 C36 H36 103.9 109.4
O38 C36 H36 109.2 109.5
C36 O38 HO38 109.5 114.0
C43 C40 H40 107.5 109.4
C43 C40 H40A 106.1 109.5
H40 C40 H40A 114.3 109.5
C49 C43 H43 108.1 109.4
C45 C43 H43 111.9 109.5
H45 C45 H45A 109.5 109.5
H45 C45 H45B 109.5 109.5
H45A C45 H45B 109.5 109.5
C53 N51 HN51 118.9 120.1
C56 C53 H53 108.6 109.5
C56 C53 H53A 108.0 109.5
H53 C53 H53A 111.6 109.5
C59 C56 H56 109.0 109.5
C59 C56 H56A 108.7 109.5
H56 C56 H56A 110.6 109.5
C62 C59 H59 108.5 109.4
C62 C59 H59A 107.8 109.5
H59 C59 H59A 111.8 109.5
H62 C62 H62A 109.4 109.5
H62 C62 H62B 109.4 109.5
H62A C62 H62B 109.5 109.5
C69 C66 H66 107.6 109.5
C69 C66 H66A 106.3 109.5
C66 C69 C75 109.7 109.4
C66 C69 H69 106.8 109.4
H66 C66 H66A 114.1 109.4
C71 C69 C75 109.6 109.5
C71 C69 H69 106.9 109.5
C75 C69 H69 110.6 109.5
C69 C75 H75 109.5 109.5
C69 C75 H75A 109.5 109.4
C69 C75 H75B 109.4 109.5
H71 C71 H71A 109.4 109.4
H71 C71 H71B 109.5 109.5
H71A C71 H71B 109.5 109.5
H75 C75 H75A 109.4 109.5
H75 C75 H75B 109.5 109.4
H75A C75 H75B 109.5 109.5
H79 C79 H79A 109.5 109.5
H79 C79 H79B 109.5 109.5
H79A C79 H79B 109.5 109.5

Torsion Angles for AFJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C79 H79 353.6 180.0
C2 S1 C79 H79A 113.6 300.0
C2 S1 C79 H79B 233.6 60.0
C5 C2 S1 H2 240.0 240.0
C5 C2 S1 H2A 119.6 120.0
H2 C2 S1 H2A 239.6 240.0
C79 S1 C2 H2 325.1 300.0
C79 S1 C2 H2A 85.5 60.0
H79 C79 S1 H79A 240.0 240.0
H79 C79 S1 H79B 120.0 120.0
H79A C79 S1 H79B 240.0 240.0
C5 C2 S1 C79 205.1 180.0
S1 C2 C5 H2 120.0 120.0
S1 C2 C5 H2A 240.4 240.0
H2 C2 C5 H2A 120.4 119.9
H2 C2 S1 C79 325.1 300.0
S1 C2 H2 H2A 119.6 120.1
C5 C2 H2 H2A 240.4 240.1
H2A C2 S1 C79 85.5 60.0
S1 C2 H2A H2 240.3 239.9
C5 C2 H2A H2 119.7 119.9
C8 C5 C2 H2 63.3 59.9
C8 C5 C2 H2A 303.0 300.0
H5 C5 C8 H5A 121.7 120.0
C30 C8 C5 H8 118.1 120.0
N10 C8 C5 H8 240.5 240.0
C5 C8 N10 C12 94.2 85.0
C5 C8 N10 HN10 274.2 265.1
H5 C5 C2 H2 183.3 180.0
H5 C5 C2 H2A 63.0 60.1
C8 C5 H5 H5A 241.6 239.9
H5 C5 C8 N10 163.7 175.0
H5 C5 C8 H8 283.2 295.0
H5A C5 C2 H2 305.0 299.9
H5A C5 C2 H2A 184.6 180.0
C8 C5 H5A H5 118.9 120.1
H5A C5 C8 N10 42.1 55.0
H5A C5 C8 H8 161.6 175.0
C30 C8 C5 H5 41.4 55.0
C30 C8 C5 H5A 279.7 295.0
C5 C8 C30 H8 243.0 240.0
N10 C8 C30 H8 119.6 120.0
C30 C8 N10 HN10 38.8 25.1
N10 C8 C5 H5 163.7 175.0
N10 C8 C5 H5A 42.1 55.0
C5 C8 N10 H8 117.1 120.0
C30 C8 N10 H8 241.7 240.0
C12 N10 C8 HN10 180.0 179.9
C8 N10 C12 O13 0.2 0.1
C8 N10 C12 C14 180.4 180.0
H8 C8 C5 H5 283.2 295.0
H8 C8 C5 H5A 161.6 175.0
C5 C8 H8 N10 240.0 240.0
H8 C8 N10 C12 337.1 324.9
H8 C8 N10 HN10 157.1 145.0
C12 N10 C8 H8 337.1 324.9
C8 N10 C12 HN10 180.0 180.1
O13 C12 N10 C14 179.8 180.0
N10 C12 C14 C17 248.1 180.0
N10 C12 C14 H14 8.1 300.1
N10 C12 C14 H14A 130.1 60.0
HN10 N10 C8 H8 157.1 145.0
C8 N10 HN10 C12 180.0 179.9
HN10 N10 C12 O13 180.1 180.0
HN10 N10 C12 C14 0.3 359.9
O13 C12 N10 HN10 180.1 180.0
N10 C12 O13 C14 180.2 180.0
O13 C12 C14 C17 68.3 360.0
O13 C12 C14 H14 188.3 120.0
O13 C12 C14 H14A 310.3 240.0
C14 C12 N10 HN10 0.3 359.9
N10 C12 C14 O13 179.8 180.0
C17 C14 C12 H14 240.0 240.0
C17 C14 C12 H14A 118.0 120.0
C12 C14 C17 H17 193.8 300.0
C12 C14 C17 H17A 316.7 60.0
H14 C14 C12 H14A 238.0 240.0
C12 C14 C17 H14 120.0 120.0
C12 C14 C17 H14A 242.0 240.0
H14 C14 C17 H14A 122.0 120.0
C20 C17 C14 H17 240.0 240.1
C20 C17 C14 H17A 117.1 120.0
H17 C17 C14 H17A 237.1 240.0
C12 C14 H14 C17 236.3 240.0
C12 C14 H14 H14A 118.2 120.0
C17 C14 H14 H14A 241.9 240.0
H14 C14 C17 H17 73.8 180.0
H14 C14 C17 H17A 196.7 300.0
C12 C14 H14A C17 122.5 120.0
C12 C14 H14A H14 241.2 240.0
C17 C14 H14A H14 118.7 120.0
H14A C14 C17 H17 311.8 60.0
H14A C14 C17 H17A 74.7 180.0
C20 C17 C14 H14 313.8 60.0
C20 C17 C14 H14A 191.8 300.1
C14 C17 C20 H17 120.0 119.9
C14 C17 C20 H17A 242.9 240.0
H17 C17 C20 H17A 122.9 120.0
H17 C17 C14 H14 73.8 180.0
H17 C17 C14 H14A 311.8 60.0
C14 C17 H17 H17A 117.4 120.0
C20 C17 H17 H17A 242.6 240.0
H17A C17 C14 H14 196.7 300.0
H17A C17 C14 H14A 74.7 180.0
C14 C17 H17A H17 241.8 240.0
C20 C17 H17A H17 118.3 120.0
C26 C20 C17 H17 326.8 65.0
C26 C20 C17 H17A 203.9 305.0
C22 C20 C26 H20 119.9 240.0
C26 C20 C22 H22 277.2 60.1
C26 C20 C22 H22A 37.1 180.0
C26 C20 C22 H22B 157.1 300.0
C22 C20 C17 H17 86.6 305.1
C22 C20 C17 H17A 323.7 185.0
C26 C20 C22 H20 239.6 120.0
H22 C22 C20 H22A 240.0 240.0
H22 C22 C20 H22B 120.0 120.0
H22A C22 C20 H22B 240.0 240.0
H20 C20 C17 H17 206.5 185.0
H20 C20 C17 H17A 83.6 64.9
H20 C20 C22 H22 37.5 300.1
H20 C20 C22 H22A 157.5 60.0
H20 C20 C22 H22B 277.5 180.1
H22 C22 C20 H20 37.5 300.1
C20 C22 H22 H22A 120.0 120.0
C20 C22 H22 H22B 240.0 240.0
H22A C22 H22 H22B 120.0 120.0
H22A C22 C20 H20 157.5 60.0
C20 C22 H22A H22 240.0 240.0
C20 C22 H22A H22B 120.0 120.0
H22 C22 H22A H22B 240.0 240.0
H22B C22 C20 H20 277.5 180.1
C20 C22 H22B H22 120.0 120.0
C20 C22 H22B H22A 240.0 240.0
H22 C22 H22B H22A 119.9 120.0
H26 C26 C20 H20 182.6 300.1
H26A C26 H26 H26B 120.0 120.0
H26A C26 C20 H20 302.6 60.0
H26 C26 H26A H26B 240.0 240.0
H26B C26 C20 H20 62.6 180.0
H26 C26 H26B H26A 120.0 120.0
O31 C30 C8 H8 131.9 240.0
O31 C30 N32 HN32 180.3 180.0
N32 C30 C8 H8 312.0 60.0
C34 N32 C30 HN32 180.0 180.0
C30 N32 C34 HN32 180.0 180.0
C36 C34 N32 HN32 73.6 24.9
C66 C34 C36 H34 245.8 240.0
C36 C34 C66 C69 176.5 175.0
C36 C34 C66 H66 296.5 295.0
C36 C34 C66 H66A 59.1 55.0
C66 C34 N32 HN32 304.2 265.0
C36 C34 C66 H34 114.9 120.0
C69 C66 C34 H66 240.0 240.0
C69 C66 C34 H66A 117.4 120.0
C34 C66 C69 C75 166.4 295.0
C34 C66 C69 H69 46.5 55.0
H66 C66 C34 H66A 237.4 240.0
H34 C34 N32 HN32 189.3 145.0
C36 C34 H34 C66 237.9 240.0
H34 C34 C66 C69 61.6 55.0
H34 C34 C66 H66 181.6 175.0
H34 C34 C66 H66A 304.1 295.0
C40 C36 C34 C66 184.2 180.0
C40 C36 C34 H34 298.4 300.0
O38 C36 C40 H36 242.5 240.0
C40 C36 O38 HO38 107.2 300.1
O38 C36 C34 C66 55.2 60.0
O38 C36 C34 H34 169.4 180.0
C40 C36 O38 H36 114.3 120.0
H36 C36 C34 C66 297.6 299.9
H36 C36 C34 H34 51.9 59.9
H36 C36 O38 HO38 352.9 180.1
HO38 O38 C36 H36 352.9 180.1
C43 C40 C36 H36 35.0 54.6
H40 C40 C43 H40A 122.7 120.0
H40 C40 C36 H36 155.0 174.5
C43 C40 H40 H40A 242.5 240.0
H40A C40 C36 H36 277.8 294.5
C43 C40 H40A H40 118.3 119.9
C49 C43 C40 H40 153.7 173.5
C49 C43 C40 H40A 31.0 53.5
C45 C43 C49 H43 238.8 240.0
C45 C43 C40 H40 33.5 53.4
C45 C43 C40 H40A 270.8 293.5
C49 C43 C45 H43 118.8 120.0
H43 C43 C40 H40 272.4 293.4
H43 C43 C40 H40A 149.7 173.4
H45 C45 C43 H43 248.8 303.6
H45A C45 H45 H45B 120.0 120.1
H45A C45 C43 H43 8.7 63.6
H45 C45 H45A H45B 240.0 239.9
H45B C45 C43 H43 128.8 183.6
H45 C45 H45B H45A 120.0 120.1
N51 C49 C43 H43 22.6 60.1
O50 C49 C43 H43 202.5 240.0
C56 C53 N51 HN51 10.0 0.0
H53 C53 C56 H53A 121.1 120.1
H53 C53 N51 HN51 130.0 120.0
C56 C53 H53 H53A 241.1 239.9
H53A C53 N51 HN51 251.2 240.0
C56 C53 H53A H53 119.3 120.1
C59 C56 C53 H53 42.0 60.0
C59 C56 C53 H53A 280.8 299.9
H56 C56 C59 H56A 120.6 120.0
H56 C56 C53 H53 162.0 180.0
H56 C56 C53 H53A 40.8 59.9
C59 C56 H56 H56A 240.6 240.0
H56A C56 C53 H53 282.6 300.1
H56A C56 C53 H53A 161.4 180.0
C59 C56 H56A H56 119.6 120.0
C62 C59 C56 H56 316.0 60.0
C62 C59 C56 H56A 195.4 300.0
H59 C59 C62 H59A 121.3 120.0
H59 C59 C56 H56 76.0 180.0
H59 C59 C56 H56A 315.4 59.9
C62 C59 H59 H59A 241.2 240.0
H59A C59 C56 H56 197.3 300.0
H59A C59 C56 H56A 76.7 180.0
C62 C59 H59A H59 119.2 120.0
H62 C62 C59 H59 232.7 180.0
H62 C62 C59 H59A 111.4 60.0
H62A C62 H62 H62B 120.0 120.1
H62A C62 C59 H59 352.7 300.0
H62A C62 C59 H59A 231.4 180.0
H62 C62 H62A H62B 240.0 240.0
H62B C62 C59 H59 112.7 60.0
H62B C62 C59 H59A 351.4 300.0
H62 C62 H62B H62A 120.0 120.0
C69 C66 C34 H34 61.6 55.0
C34 C66 C69 H66 120.0 120.0
C34 C66 C69 H66A 242.6 240.0
H66 C66 C69 H66A 122.6 120.0
C71 C69 C66 C75 122.7 240.0
C71 C69 C66 H69 242.6 120.0
C75 C69 C66 H69 119.9 240.0
C66 C69 C75 H75 62.5 60.0
C66 C69 C75 H75A 182.5 180.0
C66 C69 C75 H75B 302.5 300.0
H66 C66 C34 H34 181.6 175.0
C34 C66 H66 C69 235.3 240.0
C34 C66 H66 H66A 117.6 120.0
C69 C66 H66 H66A 242.4 240.0
H66 C66 C69 C75 46.4 175.0
H66 C66 C69 H69 286.5 295.0
H66A C66 C34 H34 304.1 295.0
C34 C66 H66A C69 123.2 120.0
C34 C66 H66A H66 241.6 240.0
C69 C66 H66A H66 118.4 120.0
H66A C66 C69 C75 283.8 55.0
H66A C66 C69 H69 163.9 175.0
C71 C69 C66 H66 169.2 55.0
C71 C69 C66 H66A 46.6 295.0
C66 C69 C71 C75 237.2 120.0
C66 C69 C71 H69 117.3 240.1
C75 C69 C71 H69 240.1 120.1
C71 C69 C75 H75 297.7 180.0
C71 C69 C75 H75A 57.6 299.9
C71 C69 C75 H75B 177.6 60.0
C75 C69 C66 H66 46.4 175.0
C75 C69 C66 H66A 283.8 55.0
C66 C69 C75 H69 242.5 119.9
C71 C69 C75 H69 117.6 239.9
H75 C75 C69 H75A 240.1 240.0
H75 C75 C69 H75B 120.0 120.0
H75A C75 C69 H75B 240.0 240.0
H69 C69 C66 H66 286.5 295.0
H69 C69 C66 H66A 163.9 175.0
C66 C69 H69 C75 119.3 240.1
C71 C69 H69 C75 240.8 120.1
H69 C69 C75 H75 180.1 300.1
H69 C69 C75 H75A 300.0 60.0
H69 C69 C75 H75B 60.0 180.1
H71 C71 C69 C75 323.1 300.1
H71 C71 C69 H69 83.0 180.0
H71A C71 H71 H71B 120.0 120.0
H71A C71 C69 C75 83.1 60.0
H71A C71 C69 H69 203.0 299.9
H71 C71 H71A H71B 240.0 240.0
H71B C71 C69 C75 203.1 180.0
H71B C71 C69 H69 323.0 59.9
H71 C71 H71B H71A 119.9 119.9
H75 C75 C69 H69 180.1 300.1
C69 C75 H75 H75A 120.0 120.0
C69 C75 H75 H75B 240.0 240.0
H75A C75 H75 H75B 120.0 120.0
H75A C75 C69 H69 300.0 60.0
C69 C75 H75A H75 240.0 240.0
C69 C75 H75A H75B 120.0 120.0
H75 C75 H75A H75B 240.0 240.0
H75B C75 C69 H69 60.0 180.1
C69 C75 H75B H75 120.0 120.0
C69 C75 H75B H75A 240.0 240.0
H75 C75 H75B H75A 120.0 120.0
S1 C79 H79 H79A 120.0 120.0
S1 C79 H79 H79B 240.0 240.0
H79A C79 H79 H79B 120.0 120.1
S1 C79 H79A H79 240.0 240.1
S1 C79 H79A H79B 120.0 120.0
H79 C79 H79A H79B 240.0 239.9
S1 C79 H79B H79 120.0 119.9
S1 C79 H79B H79A 240.0 240.0
H79 C79 H79B H79A 120.0 120.1