PDB Chemical Component AFD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AFD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O6	C6	1.422	1.429
C6	C5	1.525	1.530
C4	O4	1.424	1.429
C4	C5	1.544	1.531
C4	C3	1.539	1.531
C1	O1	1.389	1.429
C1	O5	1.446	1.429
C1	C2	1.534	1.531
O5	C5	1.458	1.429
C3	C2	1.538	1.532
C3	O3	1.420	1.429
C2	O2	1.422	1.429
C1	H1	1.100	1.090
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.090
C5	H5	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.966
O6	HO6	0.950	0.967
O1	HO1	0.950	0.968

Bond Angles for AFD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O6	C6	H61	108.8	109.5
O6	C6	H62	108.8	109.5
C6	C5	H5	107.7	109.5
C5	C4	O4	110.4	109.5
O4	C4	H4	109.5	109.5
C4	O4	HO4	109.5	114.0
C5	C4	H4	107.9	109.5
C4	C5	H5	107.5	109.4
C4	C3	O3	110.3	109.5
C4	C3	H3	108.0	109.6
O5	C1	O1	108.4	109.5
C2	C1	O1	109.8	109.5
O1	C1	H1	110.4	109.4
C1	O1	HO1	109.5	114.0
C2	C1	O5	110.3	109.5
C1	O5	C5	114.5	114.1
O5	C1	H1	109.6	109.5
C1	C2	O2	109.6	109.6
C2	C1	H1	108.4	109.5
C1	C2	H2	108.5	109.5
O5	C5	H5	108.5	109.5
C3	C2	O2	109.9	109.5
C3	C2	H2	108.4	109.5
O3	C3	H3	109.6	109.5
C3	O3	HO3	109.5	114.0
O2	C2	H2	110.0	109.6
C2	O2	HO2	109.5	114.0
H61	C6	H62	109.5	109.4

Torsion Angles for AFD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O6	C6	C5	H5	135.4	305.0
H61	C6	O6	H62	240.8	119.9
C6	C5	C4	O4	58.2	62.5
C6	C5	C4	H4	298.6	302.4
C4	C5	C6	H5	240.9	240.1
C1	O5	C5	C6	134.8	181.1
O5	C5	C6	H5	116.6	120.1
C5	C4	O4	H4	241.3	239.9
O4	C4	C5	H5	299.1	302.5
O4	C4	C3	O3	43.6	57.0
O4	C4	C3	H3	283.9	296.8
C6	C5	C4	H5	119.2	120.0
O4	C4	C5	H4	119.6	120.1
C5	C4	O4	HO4	180.0	180.0
C5	C4	C3	O3	281.2	297.0
C5	C4	C3	H3	161.4	176.9
C1	O5	C5	C4	9.2	61.1
O5	C5	C4	H5	240.9	240.0
C4	C3	C2	O2	252.5	183.1
C4	C3	C2	H2	132.2	62.9
O3	C3	C4	H3	119.8	120.2
C4	C3	O3	HO3	180.0	179.5
C2	C1	O1	O5	120.5	120.0
O1	C1	O5	C5	170.3	58.9
O5	C1	O1	H1	120.0	120.0
O1	C1	C2	O2	299.2	57.5
C2	C1	O1	H1	240.6	240.0
O1	C1	C2	H2	59.4	177.7
C2	C1	O5	O1	239.8	240.0
O1	C1	O5	H1	239.5	240.0
O5	C1	O1	HO1	180.0	60.0
O5	C1	C2	O2	58.6	177.5
C2	C1	O5	H1	119.3	120.0
O5	C1	C2	H2	178.7	297.7
C1	O5	C5	H5	250.7	301.2
O5	C1	C2	O1	119.4	120.0
O1	C1	C2	H1	120.7	120.0
C2	C1	O1	HO1	300.5	179.9
C2	C1	O5	C5	50.1	298.9
O5	C1	C2	H1	240.0	240.0
C3	C2	C1	O2	238.8	240.1
C3	C2	C1	H2	118.7	119.9
O2	C2	C1	H2	239.8	239.8
C1	C2	O2	HO2	180.0	60.0
C6	C5	O5	H5	244.0	240.0
O5	C5	C4	H4	60.3	62.4
C4	C5	O5	H5	118.5	119.9
C5	O5	C1	O1	170.3	58.9
C5	O5	C1	H1	290.8	178.8
C3	C2	C1	O1	178.0	297.6
C3	C2	C1	O5	297.4	57.6
C1	C2	C3	O2	120.9	119.9
C3	C2	C1	H1	57.4	177.6
C1	C2	C3	H2	241.2	240.1
O2	C2	C3	H2	120.3	120.2
C3	C2	O2	HO2	301.5	179.7
C4	C3	O3	H3	241.2	239.8
O3	C3	C2	O2	14.8	303.0
O3	C3	C2	H2	254.5	182.8
O2	C2	C1	O1	299.2	57.5
O2	C2	C1	O5	58.6	177.5
O2	C2	C1	H1	178.6	297.5
C1	C2	O2	H2	119.2	120.2
C3	C2	O2	H2	240.7	239.9
O5	C1	H1	O1	240.7	240.0
C2	C1	H1	O1	120.3	120.0
H1	C1	O1	HO1	60.0	300.0
C2	C1	H1	O5	239.5	240.0
H1	C1	O5	C5	290.8	178.8
H1	C1	C2	O2	178.6	297.5
H1	C1	C2	H2	298.7	57.7
H2	C2	C1	O1	59.4	177.7
H2	C2	C1	O5	178.7	297.7
C1	C2	H2	O2	240.1	239.8
H2	C2	C1	H1	298.7	57.7
C3	C2	H2	O2	120.2	120.1
H2	C2	O2	HO2	60.8	299.8
C4	C3	H3	O3	120.2	120.2
H3	C3	C2	O2	134.2	63.2
H3	C3	C2	H2	13.9	303.0
H3	C3	O3	HO3	298.8	299.7
C5	C4	H4	O4	120.2	120.1
H4	C4	O4	HO4	298.7	300.1
H4	C4	C5	H5	179.4	182.4
H4	C4	C3	O3	163.3	177.1
H4	C4	C3	H3	43.5	57.0
H5	C5	C4	O4	299.1	302.5
H5	C5	C4	H4	179.4	182.4
O6	C6	H61	H62	118.8	240.0
H61	C6	C5	H5	15.0	65.0
O6	C6	H62	H61	241.2	120.0
H62	C6	C5	H5	255.7	185.0
HO2	O2	C2	H2	60.8	299.8
HO3	O3	C3	H3	298.8	299.7
HO4	O4	C4	H4	298.7	300.1
HO6	O6	C6	H61	300.4	60.0
HO6	O6	C6	H62	59.6	300.0
HO1	O1	C1	H1	60.0	300.0