PDB Chemical Component AET

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AET

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.479
P OP2 1.469 1.610
P OP3 1.604 1.609
P O5' 1.607 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.446 1.428
C5' C4' 1.507 1.529
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.089
C4' O4' 1.470 1.445
C4' C3' 1.542 1.544
C4' H4' 1.115 1.090
O4' C1' 1.429 1.444
C3' O3' 1.450 1.429
C3' C2' 1.507 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.968
C2' O2' 1.505 1.430
C2' C1' 1.519 1.543
C2' H2' 1.115 1.090
O2' HO2' 0.951 0.967
C1' N9 1.474 1.465
C1' H1' 1.115 1.090
N9 C8 1.368 1.362
N9 C4 1.385 1.371
C8 N7 1.306 1.300
C8 H8 1.102 1.080
N7 C5 1.388 1.354
C5 C6 1.452 1.404
C5 C4 1.394 1.406
C6 N6 1.388 1.388
C6 N1 1.371 1.329
N6 CM6 1.403 1.464
N6 C10 1.397 1.347
CM6 HM61 1.115 1.090
CM6 HM62 1.115 1.090
CM6 HM63 1.114 1.090
N1 C2 1.355 1.320
C2 N3 1.351 1.316
C2 H2 1.104 1.080
N3 C4 1.354 1.329
C10 O10 1.266 1.215
C10 N11 1.336 1.348
N11 C12 1.470 1.465
N11 HN1 1.020 0.970
C12 C13 1.544 1.505
C12 C14 1.574 1.530
C12 H12 1.115 1.090
C13 ODA 1.240 1.209
C13 ODB 1.251 1.342
ODB H13 0.951 0.967
C14 O14 1.434 1.427
C14 C15 1.551 1.530
C14 H14 1.115 1.091
O14 HO4 0.950 0.968
C15 H151 1.116 1.090
C15 H152 1.116 1.090
C15 H153 1.114 1.090

Bond Angles for AET

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 114.5 109.5
OP1 P OP3 110.1 109.5
OP1 P O5' 108.0 109.5
OP2 P OP3 110.6 109.5
OP2 P O5' 111.6 109.4
P OP2 HOP2 114.5 106.8
OP3 P O5' 101.2 109.4
P OP3 HOP3 110.1 106.9
P O5' C5' 117.1 106.8
O5' C5' C4' 110.7 109.5
O5' C5' H5' 111.8 109.4
O5' C5' H5'' 111.8 109.5
C4' C5' H5' 111.7 109.5
C4' C5' H5'' 111.7 109.5
C5' C4' O4' 104.8 110.4
C5' C4' C3' 113.3 110.5
C5' C4' H4' 109.5 110.4
H5' C5' H5'' 98.7 109.5
O4' C4' C3' 107.6 104.8
O4' C4' H4' 115.0 110.3
C4' O4' C1' 110.1 105.3
C3' C4' H4' 106.8 110.4
C4' C3' O3' 127.2 110.5
C4' C3' C2' 105.3 104.1
C4' C3' H3' 97.3 110.5
O4' C1' C2' 107.9 104.9
O4' C1' N9 112.8 110.4
O4' C1' H1' 110.0 110.4
O3' C3' C2' 95.0 110.5
O3' C3' H3' 107.2 110.5
C3' O3' HO3' 127.2 106.8
C2' C3' H3' 128.4 110.6
C3' C2' O2' 109.8 110.5
C3' C2' C1' 107.6 104.0
C3' C2' H2' 109.0 110.5
O2' C2' C1' 104.4 110.8
O2' C2' H2' 111.9 110.4
C2' O2' HO2' 109.8 106.8
C1' C2' H2' 114.0 110.4
C2' C1' N9 113.9 110.4
C2' C1' H1' 108.6 110.3
N9 C1' H1' 103.4 110.4
C1' N9 C8 124.5 126.3
C1' N9 C4 129.1 126.2
C8 N9 C4 106.4 107.4
N9 C8 N7 114.0 110.0
N9 C8 H8 125.0 124.9
N9 C4 C5 104.6 106.0
N9 C4 N3 127.4 135.0
N7 C8 H8 121.0 125.0
C8 N7 C5 103.9 109.5
N7 C5 C6 132.8 134.7
N7 C5 C4 111.1 107.1
C6 C5 C4 116.1 118.2
C5 C6 N6 123.3 120.8
C5 C6 N1 116.6 118.4
C5 C4 N3 128.0 119.1
N6 C6 N1 120.1 120.8
C6 N6 CM6 119.9 120.0
C6 N6 C10 123.6 120.0
C6 N1 C2 120.1 121.2
CM6 N6 C10 116.5 120.0
N6 CM6 HM61 119.8 109.5
N6 CM6 HM62 108.5 109.5
N6 CM6 HM63 108.4 109.5
N6 C10 O10 121.1 120.0
N6 C10 N11 118.0 120.0
HM61 CM6 HM62 108.5 109.4
HM61 CM6 HM63 108.5 109.4
HM62 CM6 HM63 101.6 109.5
N1 C2 N3 127.9 122.5
N1 C2 H2 116.2 118.7
N3 C2 H2 115.9 118.8
C2 N3 C4 111.2 120.6
O10 C10 N11 120.9 119.9
C10 N11 C12 121.9 120.1
C10 N11 HN1 114.2 120.0
C12 N11 HN1 123.9 120.0
N11 C12 C13 112.1 109.5
N11 C12 C14 110.7 109.5
N11 C12 H12 107.2 109.4
C13 C12 C14 110.5 109.5
C13 C12 H12 107.3 109.5
C12 C13 ODA 119.0 120.0
C12 C13 ODB 117.8 120.0
C14 C12 H12 108.9 109.5
C12 C14 O14 116.7 109.5
C12 C14 C15 121.0 109.5
C12 C14 H14 92.7 109.5
ODA C13 ODB 123.2 120.0
C13 ODB H13 117.8 120.0
O14 C14 C15 103.3 109.5
O14 C14 H14 114.2 109.5
C14 O14 HO4 116.6 106.8
C15 C14 H14 109.0 109.4
C14 C15 H151 121.0 109.5
C14 C15 H152 108.1 109.5
C14 C15 H153 108.1 109.4
H151 C15 H152 108.0 109.5
H151 C15 H153 108.1 109.5
H152 C15 H153 101.9 109.5

Torsion Angles for AET

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 234.6 120.0
OP2 P OP1 O5' 124.9 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 250.3 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 177.1 60.0
OP1 P OP2 OP3 125.1 239.9
OP1 P OP2 O5' 236.9 120.0
OP3 P OP2 O5' 111.8 240.1
OP2 P OP3 HOP3 307.5 60.0
OP2 P O5' C5' 50.5 180.0
OP1 P OP3 OP2 232.5 120.0
OP1 P OP3 O5' 114.1 240.0
OP2 P OP3 O5' 241.7 119.9
OP3 P OP2 HOP2 54.9 60.0
OP3 P O5' C5' 292.8 299.9
OP1 P O5' OP2 126.6 240.0
OP1 P O5' OP3 244.3 120.1
OP2 P O5' OP3 117.7 240.0
O5' P OP2 HOP2 303.1 180.0
O5' P OP3 HOP3 65.9 300.0
P O5' C5' C4' 213.9 180.0
P O5' C5' H5' 339.1 60.0
P O5' C5' H5'' 88.7 300.0
HOP2 OP2 P OP3 54.9 60.0
HOP2 OP2 P O5' 303.1 180.0
HOP3 OP3 P O5' 65.9 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 296.2 61.5
O5' C5' C4' C3' 53.2 176.9
O5' C5' C4' H4' 172.3 299.2
H5' C5' O5' H5'' 250.4 120.0
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.7 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 243.0 244.6
O4' C4' C5' H4' 123.9 122.2
C5' C4' O4' C1' 130.7 159.5
C3' C4' C5' H4' 240.9 237.7
C5' C4' C3' O3' 133.2 98.4
C5' C4' C3' C2' 241.9 217.1
C5' C4' C3' H3' 15.1 335.8
O5' C5' H5' C4' 235.4 120.1
O5' C5' H5' H5'' 117.7 240.0
C4' C5' H5' H5'' 242.3 120.0
H5' C5' C4' O4' 171.0 181.4
H5' C5' C4' C3' 288.0 296.9
H5' C5' C4' H4' 47.1 59.2
O5' C5' H5'' C4' 124.6 239.9
O5' C5' H5'' H5' 242.3 119.9
C4' C5' H5'' H5' 117.7 240.0
H5'' C5' C4' O4' 61.5 301.4
H5'' C5' C4' C3' 178.5 56.9
H5'' C5' C4' H4' 297.6 179.2
O4' C4' C5' H5' 171.0 181.4
O4' C4' C5' H5'' 61.5 301.4
C5' C4' O4' C3' 120.9 119.0
C5' C4' O4' H4' 239.7 237.8
C3' C4' O4' H4' 118.8 118.8
O4' C4' C3' O3' 248.5 217.2
O4' C4' C3' C2' 357.3 335.9
O4' C4' C3' H3' 130.5 94.7
C4' O4' C1' C2' 347.0 319.6
C4' O4' C1' N9 220.2 200.7
C4' O4' C1' H1' 105.4 78.4
C3' C4' C5' H5' 288.0 296.9
C3' C4' C5' H5'' 178.5 56.9
C5' C4' C3' O4' 244.6 241.1
C5' C4' C3' H4' 120.6 122.3
O4' C4' C3' H4' 236.0 241.2
C3' C4' O4' C1' 9.9 40.5
O3' C3' C4' C2' 251.2 241.3
O3' C3' C4' H3' 118.1 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 226.9 241.3
C4' C3' C2' O2' 242.1 241.2
C4' C3' C2' C1' 355.1 0.2
C4' C3' C2' H2' 119.2 118.7
H4' C4' C5' H5' 47.1 59.2
H4' C4' C5' H5'' 297.6 179.2
C5' C4' H4' O4' 117.7 122.2
C5' C4' H4' C3' 237.0 237.6
O4' C4' H4' C3' 119.3 115.3
H4' C4' O4' C1' 251.1 281.7
H4' C4' C3' O3' 12.5 336.0
H4' C4' C3' C2' 121.3 94.7
H4' C4' C3' H3' 254.4 213.4
C1' O4' C4' C3' 9.9 40.5
C1' O4' C4' H4' 251.1 281.7
C3' C2' C1' O4' 11.0 23.8
O2' C2' C1' O4' 127.6 142.6
O4' C1' C2' H2' 250.0 265.2
C2' C1' O4' N9 126.8 118.9
C2' C1' O4' H1' 241.6 241.2
N9 C1' O4' H1' 114.8 122.3
O4' C1' N9 C8 33.5 27.0
O4' C1' N9 C4 214.8 207.1
O3' C3' C4' H4' 12.5 336.0
C4' C3' O3' C2' 113.6 114.7
C4' C3' O3' H3' 246.4 237.4
C2' C3' O3' H3' 132.8 122.7
O3' C3' C2' O2' 12.9 359.8
O3' C3' C2' C1' 125.9 118.8
O3' C3' C2' H2' 250.0 237.3
C2' C3' C4' H4' 121.3 94.7
C4' C3' C2' O3' 229.2 241.3
C4' C3' C2' H3' 112.6 118.7
O4' C1' C2' C3' 11.0 23.8
O3' C3' C2' H3' 243.4 237.4
C2' C3' O3' HO3' 66.4 65.3
O2' C2' C3' C1' 247.0 241.0
O2' C2' C3' H2' 122.9 122.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 235.9 241.5
C3' C2' C1' N9 137.1 142.7
C3' C2' C1' H1' 251.8 265.0
H3' C3' C4' H4' 254.4 213.4
C4' C3' H3' O3' 132.6 122.6
C4' C3' H3' C2' 243.8 245.3
O3' C3' H3' C2' 111.2 122.7
H3' C3' O3' HO3' 293.6 302.6
H3' C3' C2' O2' 129.5 122.5
H3' C3' C2' C1' 242.5 241.5
H3' C3' C2' H2' 6.6 360.0
HO3' O3' C3' C2' 66.4 65.3
HO3' O3' C3' H3' 293.6 302.6
O4' C1' C2' O2' 127.6 142.6
O2' C2' C3' H3' 129.5 122.5
C3' C2' O2' C1' 115.0 114.8
C3' C2' O2' H2' 238.8 237.4
C1' C2' O2' H2' 123.7 122.7
O2' C2' C1' N9 253.7 261.5
O2' C2' C1' H1' 8.4 23.7
O4' C1' C2' N9 233.9 241.1
O4' C1' C2' H1' 119.3 118.8
C1' C2' C3' H3' 242.5 241.5
C3' C2' C1' O2' 243.4 241.3
C3' C2' C1' H2' 121.0 118.6
O2' C2' C1' H2' 237.6 237.3
C1' C2' O2' HO2' 64.9 183.8
N9 C1' C2' H1' 245.4 237.7
C2' C1' N9 C8 270.0 271.5
C2' C1' N9 C4 91.3 91.5
H2' C2' C3' H3' 6.6 360.0
C3' C2' H2' O2' 121.6 122.5
C3' C2' H2' C1' 239.8 245.5
O2' C2' H2' C1' 118.2 122.9
H2' C2' O2' HO2' 301.2 61.1
H2' C2' C1' N9 16.1 24.1
H2' C2' C1' H1' 130.8 146.4
HO2' O2' C2' C1' 64.9 183.8
HO2' O2' C2' H2' 301.2 61.1
O4' C1' N9 C2' 123.5 115.5
O4' C1' N9 H1' 241.2 237.7
N9 C1' C2' H2' 16.1 24.1
C2' C1' N9 H1' 117.7 122.2
C8 N9 C1' C4 178.7 179.9
C1' N9 C8 N7 181.0 180.0
C1' N9 C8 H8 1.0 0.0
C1' N9 C4 C5 179.1 180.2
C1' N9 C4 N3 358.4 360.0
O4' C1' H1' C2' 242.0 244.5
O4' C1' H1' N9 120.7 122.3
H1' C1' C2' H2' 130.8 146.4
C2' C1' H1' N9 238.6 237.7
H1' C1' N9 C8 152.3 149.3
H1' C1' N9 C4 333.6 329.3
C8 N9 C1' H1' 152.3 149.3
C1' N9 C8 C4 181.0 180.0
C8 N9 C4 C5 0.2 0.2
C8 N9 C4 N3 179.5 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.8 359.8
C4 N9 C1' H1' 333.6 329.3
C1' N9 C4 C8 178.9 180.0
C4 N9 C8 N7 360.0 360.0
C4 N9 C8 H8 180.0 180.0
N7 C5 C4 N9 359.7 359.6
C6 C5 C4 N9 180.8 180.3
C5 C4 N9 N3 180.7 180.2
C2 N3 C4 N9 180.0 180.0
N7 C8 N9 C4 360.0 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.0 179.6
C8 N7 C5 C4 0.3 0.4
H8 C8 N9 C4 180.0 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.8 179.8
N9 C4 C5 N7 359.7 359.6
C5 N7 C8 H8 179.8 179.8
C6 C5 N7 C4 178.7 179.2
N7 C5 C6 N6 0.3 0.7
N7 C5 C6 N1 180.0 180.4
N7 C5 C4 N3 180.4 179.8
N9 C4 C5 C6 180.8 180.3
N7 C5 C6 C4 181.4 180.9
C6 C5 C4 N3 1.5 0.5
N6 C6 C5 N1 180.2 180.3
C5 C6 N6 CM6 359.5 359.7
C5 C6 N6 C10 180.3 179.7
C5 C6 N1 C2 0.9 0.2
N9 C4 C5 N3 179.3 179.8
N7 C5 C4 C6 178.9 179.4
C4 C5 C6 N6 178.9 179.8
C4 C5 C6 N1 358.6 359.5
C2 N3 C4 C5 359.1 359.8
N6 C6 C5 C4 178.9 179.8
C5 C6 N6 N1 179.8 179.7
N6 C6 N1 C2 180.7 180.0
CM6 N6 C6 C10 179.2 180.0
C6 N6 CM6 HM61 180.0 185.4
C6 N6 CM6 HM62 305.2 305.4
C6 N6 CM6 HM63 54.8 65.4
C6 N6 C10 O10 179.2 5.8
C6 N6 C10 N11 358.8 185.8
N1 C6 C5 C4 358.6 359.5
C5 C6 N1 N6 180.2 180.3
N1 C6 N6 CM6 179.7 180.0
N1 C6 N6 C10 0.5 0.0
C6 N1 C2 N3 359.6 0.0
C6 N1 C2 H2 179.6 180.0
CM6 N6 C6 N1 179.7 180.0
C6 N6 CM6 C10 180.7 180.0
CM6 N6 C10 O10 359.9 185.9
CM6 N6 C10 N11 179.5 5.8
HM61 CM6 N6 HM62 234.7 240.0
HM61 CM6 N6 HM63 125.2 119.9
HM62 CM6 N6 HM63 250.5 239.9
C10 N6 C6 N1 0.5 0.0
C6 N6 C10 CM6 179.2 180.0
C10 N6 CM6 HM61 359.2 5.4
C10 N6 CM6 HM62 124.5 125.4
C10 N6 CM6 HM63 234.0 245.4
O10 C10 N6 N11 180.4 180.1
N6 C10 N11 C12 180.5 175.0
N6 C10 N11 HN1 0.5 355.0
HM61 CM6 N6 C10 359.2 5.4
N6 CM6 HM61 HM62 125.3 120.1
N6 CM6 HM61 HM63 234.8 240.0
HM62 CM6 HM61 HM63 109.6 120.0
HM62 CM6 N6 C10 124.5 125.4
N6 CM6 HM62 HM61 228.3 240.0
N6 CM6 HM62 HM63 114.1 120.0
HM61 CM6 HM62 HM63 245.8 240.1
HM63 CM6 N6 C10 234.0 245.4
N6 CM6 HM63 HM61 131.6 120.0
N6 CM6 HM63 HM62 245.9 239.9
HM61 CM6 HM63 HM62 114.2 119.9
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.3 360.0
N9 C4 N3 C2 180.0 180.0
C5 C4 N3 C2 359.1 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.3 179.9
N9 C4 N3 C5 180.9 180.3
C4 N3 C2 H2 180.3 179.9
N6 C10 O10 N11 179.6 179.9
O10 C10 N11 C12 0.1 355.0
O10 C10 N11 HN1 180.1 175.0
N6 C10 N11 O10 180.4 180.1
C12 N11 C10 HN1 180.0 180.0
C10 N11 C12 C13 217.9 270.0
C10 N11 C12 C14 94.1 150.0
C10 N11 C12 H12 335.5 30.0
C10 N11 C12 HN1 180.0 180.0
C13 C12 N11 C14 123.9 120.0
C13 C12 N11 H12 242.5 240.0
N11 C12 C13 ODA 198.7 150.0
N11 C12 C13 ODB 19.4 329.9
C14 C12 N11 H12 118.6 120.0
N11 C12 C14 O14 49.9 60.1
N11 C12 C14 C15 282.9 300.0
N11 C12 C14 H14 168.8 180.0
C10 N11 HN1 C12 180.0 180.0
HN1 N11 C12 C13 37.9 90.1
HN1 N11 C12 C14 274.1 330.0
HN1 N11 C12 H12 155.5 210.1
C13 C12 N11 HN1 37.9 90.1
N11 C12 C13 C14 236.0 240.0
N11 C12 C13 H12 117.5 119.9
C14 C12 C13 H12 241.4 240.0
C13 C12 C14 O14 285.1 300.0
C13 C12 C14 C15 158.1 180.0
C13 C12 C14 H14 44.0 60.0
ODA C13 C12 ODB 179.3 180.0
C12 C13 ODB H13 180.0 180.0
C14 C12 N11 HN1 274.1 330.0
N11 C12 C14 C13 124.8 120.0
N11 C12 C14 H12 242.4 240.1
C13 C12 C14 H12 117.6 120.1
C14 C12 C13 ODA 322.7 270.0
C14 C12 C13 ODB 143.3 90.0
O14 C14 C12 C15 127.0 120.1
O14 C14 C12 H14 241.1 240.0
C12 C14 O14 HO4 179.9 300.0
C15 C14 C12 H14 114.1 120.0
C12 C14 C15 H151 180.1 180.0
C12 C14 C15 H152 305.2 300.1
C12 C14 C15 H153 54.7 60.0
H12 C12 N11 HN1 155.5 210.1
N11 C12 H12 C13 239.4 240.0
N11 C12 H12 C14 119.7 119.9
C13 C12 H12 C14 240.4 239.9
H12 C12 C13 ODA 81.3 30.0
H12 C12 C13 ODB 261.9 210.0
H12 C12 C14 O14 167.5 180.0
H12 C12 C14 C15 40.5 59.9
H12 C12 C14 H14 286.4 300.0
ODA C13 C12 C14 322.7 270.0
ODA C13 C12 H12 81.3 30.0
C12 C13 ODA ODB 180.7 180.0
ODA C13 ODB H13 0.7 0.0
ODB C13 C12 C14 143.3 90.0
ODB C13 C12 H12 261.9 210.0
C12 C13 ODB ODA 179.3 180.0
O14 C14 C12 H12 167.5 180.0
C12 C14 O14 C15 224.7 240.0
C12 C14 O14 H14 106.5 120.0
C15 C14 O14 H14 241.8 240.0
O14 C14 C15 H151 47.2 60.0
O14 C14 C15 H152 172.4 180.0
O14 C14 C15 H153 281.9 300.0
C15 C14 C12 H12 40.5 59.9
C12 C14 C15 O14 132.8 120.1
C12 C14 C15 H14 254.6 240.0
O14 C14 C15 H14 121.8 120.0
C15 C14 O14 HO4 315.2 60.0
H151 C15 C14 H152 234.8 239.9
H151 C15 C14 H153 125.3 120.0
H152 C15 C14 H153 250.5 240.0
H14 C14 C12 H12 286.4 300.0
C12 C14 H14 O14 239.1 240.0
C12 C14 H14 C15 124.1 120.0
O14 C14 H14 C15 245.1 240.0
H14 C14 O14 HO4 73.4 180.0
H14 C14 C15 H151 285.4 300.0
H14 C14 C15 H152 50.6 60.0
H14 C14 C15 H153 160.1 180.0
HO4 O14 C14 C15 315.2 60.0
HO4 O14 C14 H14 73.4 180.0
H151 C15 C14 H14 285.4 300.0
C14 C15 H151 H152 125.2 120.0
C14 C15 H151 H153 234.7 240.0
H152 C15 H151 H153 109.5 120.0
H152 C15 C14 H14 50.6 60.0
C14 C15 H152 H151 227.5 240.0
C14 C15 H152 H153 113.8 120.0
H151 C15 H152 H153 246.3 240.0
H153 C15 C14 H14 160.1 180.0
C14 C15 H153 H151 132.6 120.0
C14 C15 H153 H152 246.3 240.0
H151 C15 H153 H152 113.6 120.0