PDB Chemical Component AES
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AES
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C2 |
1.392 |
1.382 |
| C3 |
C4 |
1.393 |
1.383 |
| C3 |
H3 |
1.081 |
1.080 |
| C2 |
C1 |
1.395 |
1.382 |
| C2 |
H2 |
1.080 |
1.080 |
| C1 |
S |
1.759 |
1.761 |
| C1 |
C6 |
1.394 |
1.383 |
| S |
F |
1.551 |
1.610 |
| S |
O1S |
1.399 |
1.420 |
| S |
O2S |
1.410 |
1.421 |
| C6 |
C5 |
1.390 |
1.383 |
| C6 |
H6 |
1.080 |
1.079 |
| C5 |
C4 |
1.393 |
1.382 |
| C5 |
H5 |
1.080 |
1.080 |
| C4 |
C7 |
1.528 |
1.506 |
| C7 |
C8 |
1.523 |
1.530 |
| C7 |
H71 |
1.100 |
1.090 |
| C7 |
H72 |
1.100 |
1.090 |
| C8 |
N8 |
1.468 |
1.469 |
| C8 |
H81 |
1.100 |
1.090 |
| C8 |
H82 |
1.100 |
1.090 |
| N8 |
HN81 |
1.000 |
1.009 |
| N8 |
HN82 |
1.000 |
1.009 |
Bond Angles for AES
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C3 |
C4 |
120.0 |
120.0 |
| C2 |
C3 |
H3 |
120.0 |
120.0 |
| C3 |
C2 |
C1 |
119.7 |
120.0 |
| C3 |
C2 |
H2 |
120.2 |
120.0 |
| C4 |
C3 |
H3 |
120.0 |
120.0 |
| C3 |
C4 |
C5 |
120.3 |
120.0 |
| C3 |
C4 |
C7 |
120.4 |
120.0 |
| C1 |
C2 |
H2 |
120.2 |
120.0 |
| C2 |
C1 |
S |
120.4 |
120.1 |
| C2 |
C1 |
C6 |
120.3 |
120.0 |
| S |
C1 |
C6 |
119.3 |
119.9 |
| C1 |
S |
F |
108.8 |
107.2 |
| C1 |
S |
O1S |
105.7 |
106.5 |
| C1 |
S |
O2S |
105.4 |
106.4 |
| C1 |
C6 |
C5 |
119.8 |
119.9 |
| C1 |
C6 |
H6 |
120.1 |
120.0 |
| F |
S |
O1S |
106.7 |
106.4 |
| F |
S |
O2S |
108.6 |
106.4 |
| O1S |
S |
O2S |
121.1 |
123.2 |
| C5 |
C6 |
H6 |
120.1 |
120.0 |
| C6 |
C5 |
C4 |
119.9 |
120.1 |
| C6 |
C5 |
H5 |
120.0 |
120.0 |
| C4 |
C5 |
H5 |
120.1 |
120.0 |
| C5 |
C4 |
C7 |
119.3 |
120.0 |
| C4 |
C7 |
C8 |
112.7 |
109.5 |
| C4 |
C7 |
H71 |
108.6 |
109.5 |
| C4 |
C7 |
H72 |
108.7 |
109.5 |
| C8 |
C7 |
H71 |
108.7 |
109.4 |
| C8 |
C7 |
H72 |
108.7 |
109.5 |
| C7 |
C8 |
N8 |
108.0 |
109.5 |
| C7 |
C8 |
H81 |
109.8 |
109.5 |
| C7 |
C8 |
H82 |
109.8 |
109.5 |
| H71 |
C7 |
H72 |
109.5 |
109.5 |
| N8 |
C8 |
H81 |
109.8 |
109.4 |
| N8 |
C8 |
H82 |
109.8 |
109.5 |
| C8 |
N8 |
HN81 |
109.5 |
111.0 |
| C8 |
N8 |
HN82 |
109.5 |
111.0 |
| H81 |
C8 |
H82 |
109.5 |
109.5 |
| HN81 |
N8 |
HN82 |
109.5 |
111.0 |
Torsion Angles for AES
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| C2 |
C3 |
C4 |
C5 |
359.7 |
0.1 |
| C2 |
C3 |
C4 |
C7 |
180.5 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
S |
179.7 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
0.1 |
0.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| C4 |
C3 |
C2 |
C1 |
0.1 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
0.4 |
359.9 |
| C3 |
C4 |
C5 |
H5 |
180.4 |
180.0 |
| C5 |
C4 |
C3 |
C7 |
179.2 |
180.1 |
| C3 |
C4 |
C7 |
C8 |
285.4 |
90.0 |
| C3 |
C4 |
C7 |
H71 |
45.9 |
210.0 |
| C3 |
C4 |
C7 |
H72 |
164.9 |
330.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.3 |
| H3 |
C3 |
C2 |
C1 |
180.1 |
179.7 |
| H3 |
C3 |
C2 |
H2 |
0.0 |
359.7 |
| H3 |
C3 |
C4 |
C5 |
179.7 |
180.4 |
| H3 |
C3 |
C4 |
C7 |
0.5 |
0.3 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
180.1 |
179.7 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| S |
C1 |
C2 |
C6 |
179.6 |
179.9 |
| C2 |
C1 |
S |
F |
193.7 |
90.0 |
| C2 |
C1 |
S |
O1S |
79.4 |
203.6 |
| C2 |
C1 |
S |
O2S |
310.0 |
336.5 |
| C2 |
C1 |
C6 |
C5 |
360.0 |
360.0 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
0.0 |
359.7 |
| C3 |
C2 |
H2 |
C1 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
S |
359.8 |
359.9 |
| H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
| S |
C1 |
C2 |
H2 |
359.8 |
359.9 |
| C2 |
C1 |
S |
C6 |
180.4 |
180.1 |
| S |
C1 |
C6 |
C5 |
180.3 |
180.0 |
| S |
C1 |
C6 |
H6 |
0.4 |
0.0 |
| F |
S |
C1 |
O1S |
114.3 |
246.4 |
| F |
S |
C1 |
O2S |
243.7 |
113.5 |
| O1S |
S |
C1 |
O2S |
129.4 |
227.1 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
| C2 |
C1 |
C6 |
S |
179.6 |
179.9 |
| C6 |
C1 |
S |
F |
13.3 |
270.0 |
| C6 |
C1 |
S |
O1S |
259.1 |
23.5 |
| C6 |
C1 |
S |
O2S |
129.7 |
156.5 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
C4 |
359.8 |
0.1 |
| C1 |
C6 |
C5 |
H5 |
179.8 |
180.0 |
| F |
S |
C1 |
C6 |
13.3 |
270.0 |
| C1 |
S |
F |
O1S |
246.3 |
113.6 |
| C1 |
S |
F |
O2S |
114.3 |
246.5 |
| O1S |
S |
F |
O2S |
228.0 |
132.9 |
| O1S |
S |
C1 |
C6 |
259.1 |
23.5 |
| C1 |
S |
O1S |
F |
115.7 |
245.9 |
| C1 |
S |
O1S |
O2S |
240.5 |
123.0 |
| F |
S |
O1S |
O2S |
124.7 |
237.1 |
| O2S |
S |
C1 |
C6 |
129.7 |
156.5 |
| C1 |
S |
O2S |
F |
243.5 |
114.1 |
| C1 |
S |
O2S |
O1S |
119.7 |
237.0 |
| F |
S |
O2S |
O1S |
236.2 |
122.9 |
| C3 |
C4 |
C5 |
C6 |
0.4 |
359.9 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
C7 |
179.6 |
180.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C4 |
179.7 |
180.1 |
| H6 |
C6 |
C5 |
H5 |
359.7 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
179.7 |
180.4 |
| C3 |
C4 |
C5 |
C7 |
180.8 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
179.7 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C5 |
C4 |
C7 |
C8 |
106.2 |
269.9 |
| C5 |
C4 |
C7 |
H71 |
226.7 |
29.9 |
| C5 |
C4 |
C7 |
H72 |
345.7 |
149.9 |
| H5 |
C5 |
C6 |
H6 |
359.7 |
359.9 |
| C6 |
C5 |
H5 |
C4 |
180.0 |
180.1 |
| H5 |
C5 |
C4 |
C7 |
359.6 |
0.1 |
| C7 |
C4 |
C3 |
H3 |
0.5 |
0.3 |
| C3 |
C4 |
C7 |
C5 |
179.2 |
180.1 |
| C7 |
C4 |
C5 |
H5 |
359.6 |
0.1 |
| C8 |
C7 |
C4 |
H71 |
239.5 |
240.0 |
| C8 |
C7 |
C4 |
H72 |
120.5 |
120.0 |
| C4 |
C7 |
C8 |
N8 |
152.5 |
180.0 |
| C4 |
C7 |
C8 |
H81 |
272.3 |
300.0 |
| C4 |
C7 |
C8 |
H82 |
32.8 |
60.0 |
| H71 |
C7 |
C4 |
H72 |
241.0 |
240.0 |
| C4 |
C7 |
C8 |
H71 |
120.5 |
120.0 |
| C4 |
C7 |
C8 |
H72 |
239.5 |
240.0 |
| H71 |
C7 |
C8 |
H72 |
119.0 |
120.0 |
| N8 |
C8 |
C7 |
H81 |
240.2 |
240.0 |
| N8 |
C8 |
C7 |
H82 |
119.8 |
120.0 |
| C7 |
C8 |
N8 |
HN81 |
180.0 |
56.0 |
| C7 |
C8 |
N8 |
HN82 |
300.0 |
180.0 |
| H81 |
C8 |
C7 |
H82 |
239.6 |
240.0 |
| C4 |
C7 |
H71 |
C8 |
237.0 |
240.0 |
| C4 |
C7 |
H71 |
H72 |
118.5 |
120.0 |
| C8 |
C7 |
H71 |
H72 |
241.5 |
240.0 |
| H71 |
C7 |
C8 |
N8 |
32.1 |
60.0 |
| H71 |
C7 |
C8 |
H81 |
151.9 |
180.0 |
| H71 |
C7 |
C8 |
H82 |
272.3 |
300.0 |
| C4 |
C7 |
H72 |
C8 |
123.0 |
120.0 |
| C4 |
C7 |
H72 |
H71 |
241.5 |
240.0 |
| C8 |
C7 |
H72 |
H71 |
118.5 |
120.0 |
| H72 |
C7 |
C8 |
N8 |
273.0 |
300.0 |
| H72 |
C7 |
C8 |
H81 |
32.8 |
60.0 |
| H72 |
C7 |
C8 |
H82 |
153.3 |
180.0 |
| N8 |
C8 |
C7 |
H71 |
32.1 |
60.0 |
| N8 |
C8 |
C7 |
H72 |
273.0 |
300.0 |
| C7 |
C8 |
N8 |
H81 |
119.8 |
120.0 |
| C7 |
C8 |
N8 |
H82 |
240.2 |
240.0 |
| H81 |
C8 |
N8 |
H82 |
120.4 |
120.0 |
| HN81 |
N8 |
C8 |
HN82 |
240.0 |
236.1 |
| H81 |
C8 |
C7 |
H71 |
151.9 |
180.0 |
| H81 |
C8 |
C7 |
H72 |
32.8 |
60.0 |
| C7 |
C8 |
H81 |
N8 |
241.3 |
240.0 |
| C7 |
C8 |
H81 |
H82 |
120.7 |
120.0 |
| N8 |
C8 |
H81 |
H82 |
239.3 |
240.0 |
| H81 |
C8 |
N8 |
HN81 |
60.2 |
296.0 |
| H81 |
C8 |
N8 |
HN82 |
180.2 |
60.0 |
| H82 |
C8 |
C7 |
H71 |
272.3 |
300.0 |
| H82 |
C8 |
C7 |
H72 |
153.3 |
180.0 |
| C7 |
C8 |
H82 |
N8 |
118.7 |
120.0 |
| C7 |
C8 |
H82 |
H81 |
239.4 |
240.0 |
| N8 |
C8 |
H82 |
H81 |
120.7 |
120.0 |
| H82 |
C8 |
N8 |
HN81 |
299.8 |
176.0 |
| H82 |
C8 |
N8 |
HN82 |
59.8 |
300.0 |
| HN81 |
N8 |
C8 |
H81 |
60.2 |
296.0 |
| HN81 |
N8 |
C8 |
H82 |
299.8 |
176.0 |
| C8 |
N8 |
HN81 |
HN82 |
120.0 |
124.0 |
| HN82 |
N8 |
C8 |
H81 |
180.2 |
60.0 |
| HN82 |
N8 |
C8 |
H82 |
59.8 |
300.0 |
| C8 |
N8 |
HN82 |
HN81 |
240.0 |
236.0 |