PDB Chemical Component AED

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AED

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C8	1.400	1.387
C4	O9	1.372	1.359
C4	C1	1.406	1.387
C5	C10	1.531	1.530
C5	C2	1.542	1.529
C6	C2	1.548	1.530
C6	C11	1.539	1.530
C7	C13	1.511	1.507
C7	C12	1.402	1.383
C7	C3	1.402	1.383
C8	C12	1.396	1.382
C10	C14	1.531	1.530
C13	C15	1.536	1.530
C15	N16	1.483	1.469
C3	C1	1.400	1.382
C1	C2	1.513	1.507
C14	C11	1.535	1.530
C5	H5	1.100	1.090
C5	H5A	1.100	1.090
C6	H6	1.100	1.090
C6	H6A	1.100	1.090
C8	H8	1.080	1.080
C10	H10	1.100	1.089
C10	H10A	1.100	1.090
C13	H13	1.099	1.090
C13	H13A	1.100	1.089
C15	H15	1.100	1.090
C15	H15A	1.100	1.089
O9	HO9	0.950	0.967
C12	H12	1.080	1.080
N16	HN16	1.000	1.009
N16	HN1A	1.000	1.009
C3	H3	1.080	1.080
C2	H2	1.100	1.090
C14	H14	1.100	1.090
C14	H14A	1.100	1.090
C11	H11	1.100	1.090
C11	H11A	1.100	1.090

Bond Angles for AED

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C8	C4	O9	118.0	120.1
C8	C4	C1	121.8	119.9
C4	C8	C12	118.8	119.9
C4	C8	H8	120.6	120.1
O9	C4	C1	120.3	120.1
C4	O9	HO9	109.5	114.0
C4	C1	C3	118.4	120.0
C4	C1	C2	120.9	120.0
C10	C5	C2	111.7	109.4
C5	C10	C14	107.9	109.5
C10	C5	H5	108.8	109.5
C10	C5	H5A	108.2	109.5
C5	C10	H10	110.0	109.5
C5	C10	H10A	110.3	109.4
C5	C2	C6	114.2	109.5
C5	C2	C1	109.7	109.5
C2	C5	H5	108.7	109.5
C2	C5	H5A	108.2	109.5
C5	C2	H2	106.4	109.5
C2	C6	C11	115.9	109.5
C6	C2	C1	110.5	109.4
C2	C6	H6	107.4	109.4
C2	C6	H6A	105.9	109.5
C6	C2	H2	105.5	109.4
C6	C11	C14	113.6	109.5
C11	C6	H6	107.4	109.4
C11	C6	H6A	105.9	109.5
C6	C11	H11	108.1	109.5
C6	C11	H11A	107.2	109.4
C13	C7	C12	120.9	119.9
C13	C7	C3	119.4	119.9
C7	C13	C15	112.9	109.4
C7	C13	H13	108.4	109.5
C7	C13	H13A	107.6	109.5
C12	C7	C3	119.7	120.1
C7	C12	C8	120.6	120.0
C7	C12	H12	119.7	120.0
C7	C3	C1	120.7	120.0
C7	C3	H3	119.6	120.0
C12	C8	H8	120.6	120.0
C8	C12	H12	119.7	120.0
C10	C14	C11	109.8	109.4
C14	C10	H10	110.0	109.5
C14	C10	H10A	110.3	109.5
C10	C14	H14	109.4	109.5
C10	C14	H14A	109.3	109.5
C13	C15	N16	111.6	109.5
C15	C13	H13	108.3	109.5
C15	C13	H13A	107.6	109.5
C13	C15	H15	108.8	109.5
C13	C15	H15A	108.3	109.5
N16	C15	H15	108.8	109.4
N16	C15	H15A	108.3	109.5
C15	N16	HN16	109.5	111.0
C15	N16	HN1A	109.5	111.0
C3	C1	C2	120.7	120.0
C1	C3	H3	119.6	119.9
C1	C2	H2	110.4	109.4
C11	C14	H14	109.3	109.5
C11	C14	H14A	109.3	109.5
C14	C11	H11	108.1	109.5
C14	C11	H11A	107.2	109.5
H5	C5	H5A	111.2	109.5
H6	C6	H6A	114.7	109.5
H10	C10	H10A	108.3	109.4
H13	C13	H13A	112.2	109.5
H15	C15	H15A	111.2	109.5
HN16	N16	HN1A	109.5	111.1
H14	C14	H14A	109.7	109.5
H11	C11	H11A	112.7	109.5

Torsion Angles for AED

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O9	C4	C8	C1	180.2	180.3
C8	C4	O9	HO9	42.1	89.9
C8	C4	C1	C3	360.0	360.0
C8	C4	C1	C2	180.0	180.0
C7	C12	C8	C4	0.4	359.9
C12	C8	C4	H8	180.0	180.1
C4	C8	C12	H12	180.4	180.0
C8	C4	O9	C1	179.8	179.7
O9	C4	C8	C12	179.9	180.0
O9	C4	C8	H8	359.9	360.0
O9	C4	C1	C3	179.8	179.7
O9	C4	C1	C2	359.7	359.7
C8	C4	C1	O9	180.2	180.3
C1	C4	C8	C12	359.7	359.8
C1	C4	C8	H8	179.7	179.7
C1	C4	O9	HO9	222.3	270.2
C5	C2	C1	C4	99.0	120.0
C6	C2	C1	C4	225.7	240.0
C7	C3	C1	C4	0.2	0.6
C3	C1	C4	C2	180.0	180.0
C4	C1	C3	H3	180.1	180.2
C4	C1	C2	H2	342.0	360.0
C10	C5	C2	C6	46.9	60.0
C10	C5	C2	C1	171.5	180.0
C2	C5	C10	H5	240.0	240.0
C2	C5	C10	H5A	119.0	120.0
C10	C5	C2	H2	290.9	300.0
C5	C10	C14	C11	65.5	60.0
C14	C10	C5	H10	240.0	239.9
C14	C10	C5	H10A	120.6	120.0
C5	C10	C14	H14	185.5	180.0
C5	C10	C14	H14A	305.6	300.0
H5	C5	C10	H5A	239.0	240.0
H10	C10	C5	H10A	240.6	240.1
C4	C1	C2	C5	99.0	120.0
C2	C5	C10	C14	297.8	300.0
C10	C5	C2	H5	120.0	120.0
C10	C5	C2	H5A	241.0	240.0
C2	C5	C10	H10	57.8	60.1
C2	C5	C10	H10A	177.1	180.0
C5	C2	C6	C11	325.2	300.0
C6	C2	C5	C1	235.4	240.0
C5	C2	C6	H6	85.2	60.0
C5	C2	C6	H6A	208.1	180.0
C6	C2	C5	H2	116.0	120.0
C3	C1	C2	C5	279.0	300.0
C1	C2	C5	H2	240.6	240.0
H5	C5	C2	H5A	120.9	120.1
C4	C1	C2	C6	225.7	240.0
C5	C2	C6	C1	124.1	120.0
C6	C2	C5	H5	286.9	300.0
C6	C2	C5	H5A	165.9	180.0
C5	C2	C6	H2	243.5	240.0
C2	C6	C11	C14	38.5	60.0
C11	C6	C2	H6	240.0	240.1
C11	C6	C2	H6A	117.1	120.0
C2	C6	C11	H11	158.5	180.0
C2	C6	C11	H11A	280.3	299.9
C3	C1	C2	C6	45.7	60.1
C1	C2	C6	H2	119.3	119.9
H6	C6	C2	H6A	237.1	240.0
C11	C6	C2	C1	201.0	180.0
C2	C6	C11	H6	120.0	119.9
C2	C6	C11	H6A	242.9	239.9
C11	C6	C2	H2	81.7	60.1
C10	C14	C11	C6	306.1	300.0
C6	C11	C14	H14	186.1	180.0
C6	C11	C14	H14A	66.0	60.0
C14	C11	C6	H11	240.0	240.0
C14	C11	C6	H11A	118.2	120.0
H6	C6	C11	H6A	122.9	120.0
H11	C11	C6	H11A	238.2	240.0
C12	C7	C13	C3	179.7	180.6
C13	C7	C12	C8	180.0	180.0
C13	C7	C12	H12	0.0	360.0
C13	C7	C3	C1	179.7	179.7
C13	C7	C3	H3	359.7	0.1
C7	C13	C15	N16	182.6	180.0
C15	C13	C7	H13	240.0	240.1
C15	C13	C7	H13A	118.5	120.0
C7	C13	C15	H15	302.6	300.0
C7	C13	C15	H15A	63.6	60.0
H13	C13	C7	H13A	238.5	240.0
C4	C8	C12	C7	0.4	359.9
C13	C7	C12	C3	180.3	179.4
C12	C7	C13	C15	314.5	90.1
C12	C7	C13	H13	74.5	210.0
C12	C7	C13	H13A	196.0	330.0
C12	C7	C3	C1	360.0	359.1
C12	C7	C3	H3	180.0	179.5
C7	C12	C8	H8	180.4	180.0
C8	C12	C7	H12	180.0	180.0
C4	C1	C3	C7	0.2	0.6
C13	C7	C3	C12	179.7	180.6
C3	C7	C13	C15	134.8	269.5
C3	C7	C13	H13	254.8	29.4
C3	C7	C13	H13A	16.3	149.4
C3	C7	C12	C8	359.7	0.6
C3	C7	C12	H12	179.7	180.6
C7	C3	C1	C2	180.2	180.5
C1	C3	C7	H3	180.0	179.7
C12	C8	C4	O9	179.9	180.0
C12	C8	C4	C1	359.7	359.8
C4	C8	C12	H8	180.0	179.9
C8	C12	C7	C3	359.7	0.6
C7	C12	C8	H12	180.0	180.0
C14	C10	C5	C2	297.8	300.0
C14	C10	C5	H5	57.7	60.0
C14	C10	C5	H5A	178.7	180.0
C5	C10	C14	H10	120.0	120.0
C5	C10	C14	H10A	239.4	240.0
C6	C11	C14	C10	306.1	300.0
C11	C14	C10	H14	240.0	240.0
C11	C14	C10	H14A	119.9	120.0
C10	C14	C11	H11	186.1	180.0
C10	C14	C11	H11A	64.3	60.0
H10	C10	C14	H10A	119.4	120.0
H14	C14	C10	H14A	239.8	240.0
C15	C13	C7	C12	314.5	90.1
C15	C13	C7	C3	134.8	269.5
C7	C13	C15	H13	120.0	120.0
C7	C13	C15	H13A	241.5	240.0
N16	C15	C13	H15	240.0	240.1
N16	C15	C13	H15A	119.1	120.1
C13	C15	N16	HN16	1.7	56.0
C13	C15	N16	HN1A	121.7	180.0
H13	C13	C15	H13A	121.5	120.0
H15	C15	C13	H15A	239.1	240.0
N16	C15	C13	H13	62.6	60.1
N16	C15	C13	H13A	301.1	300.1
C13	C15	N16	H15	120.0	119.9
C13	C15	N16	H15A	240.9	239.9
H15	C15	N16	H15A	120.9	120.0
HN16	N16	C15	HN1A	240.0	236.0
C4	C1	C3	C2	180.0	180.0
C5	C2	C1	C3	279.0	300.0
C6	C2	C1	C3	45.7	60.1
C7	C3	C1	H3	180.0	180.3
C3	C1	C2	H2	162.0	180.0
C4	C1	C2	C3	180.0	180.0
C5	C2	C1	C6	233.3	239.9
C1	C2	C5	H5	51.5	60.0
C1	C2	C5	H5A	290.5	300.0
C5	C2	C1	H2	117.0	120.0
C1	C2	C6	C11	201.0	180.0
C1	C2	C6	H6	321.0	299.9
C1	C2	C6	H6A	84.0	59.9
C6	C2	C1	H2	243.7	240.1
C2	C1	C3	H3	0.2	0.2
C14	C11	C6	H6	278.5	300.0
C14	C11	C6	H6A	155.6	180.0
C6	C11	C14	H11	120.0	120.0
C6	C11	C14	H11A	241.8	240.0
C11	C14	C10	H10	305.5	300.0
C11	C14	C10	H10A	186.1	180.0
C10	C14	C11	H14	120.0	120.0
C10	C14	C11	H14A	240.1	240.0
H14	C14	C11	H14A	120.1	120.0
H11	C11	C14	H11A	121.8	120.0
C10	C5	H5	C2	238.2	240.0
H5	C5	C10	C14	57.7	60.0
C10	C5	H5	H5A	119.1	120.0
H5	C5	C10	H10	177.7	180.0
H5	C5	C10	H10A	297.1	300.0
H5	C5	C2	C6	286.9	300.0
H5	C5	C2	C1	51.5	60.0
C2	C5	H5	H5A	240.9	239.9
H5	C5	C2	H2	170.9	180.0
C10	C5	H5A	C2	121.2	120.0
H5A	C5	C10	C14	178.7	180.0
C10	C5	H5A	H5	240.6	240.0
H5A	C5	C10	H10	298.7	300.0
H5A	C5	C10	H10A	58.1	60.0
H5A	C5	C2	C6	165.9	180.0
H5A	C5	C2	C1	290.5	300.0
C2	C5	H5A	H5	119.4	120.1
H5A	C5	C2	H2	50.0	59.9
C2	C6	H6	C11	234.7	240.1
H6	C6	C2	C1	321.0	299.9
C2	C6	H6	H6A	117.4	120.1
H6	C6	C2	H2	201.7	180.0
H6	C6	C11	C14	278.5	300.0
C11	C6	H6	H6A	242.6	240.0
H6	C6	C11	H11	38.5	60.0
H6	C6	C11	H11A	160.3	180.0
C2	C6	H6A	C11	123.6	120.0
H6A	C6	C2	C1	84.0	59.9
C2	C6	H6A	H6	241.8	240.0
H6A	C6	C2	H2	324.6	300.0
H6A	C6	C11	C14	155.6	180.0
C11	C6	H6A	H6	118.2	120.0
H6A	C6	C11	H11	275.6	300.0
H6A	C6	C11	H11A	37.4	60.0
H8	C8	C4	O9	359.9	360.0
H8	C8	C4	C1	179.7	179.7
C4	C8	H8	C12	180.0	180.1
H8	C8	C12	H12	0.4	0.0
H10	C10	C5	C2	57.8	60.1
C5	C10	H10	C14	241.3	239.9
H10	C10	C5	H5	177.7	180.0
H10	C10	C5	H5A	298.7	300.0
C5	C10	H10	H10A	120.6	120.0
H10	C10	C14	C11	305.5	300.0
C14	C10	H10	H10A	239.4	240.0
H10	C10	C14	H14	65.5	60.0
H10	C10	C14	H14A	185.7	180.0
H10A	C10	C5	C2	177.1	180.0
C5	C10	H10A	C14	119.2	120.0
H10A	C10	C5	H5	297.1	300.0
H10A	C10	C5	H5A	58.1	60.0
C5	C10	H10A	H10	239.6	240.0
H10A	C10	C14	C11	186.1	180.0
C14	C10	H10A	H10	120.4	120.0
H10A	C10	C14	H14	306.1	300.0
H10A	C10	C14	H14A	66.3	60.0
H13	C13	C7	C12	74.5	210.0
H13	C13	C7	C3	254.8	29.4
C7	C13	H13	C15	237.2	240.1
C7	C13	H13	H13A	118.6	120.0
H13	C13	C15	N16	62.6	60.1
C15	C13	H13	H13A	241.4	240.0
H13	C13	C15	H15	182.6	180.0
H13	C13	C15	H15A	303.5	300.0
H13A	C13	C7	C12	196.0	330.0
H13A	C13	C7	C3	16.3	149.4
C7	C13	H13A	C15	121.9	120.0
C7	C13	H13A	H13	240.9	240.0
H13A	C13	C15	N16	301.1	300.1
C15	C13	H13A	H13	119.0	120.0
H13A	C13	C15	H15	61.1	60.0
H13A	C13	C15	H15A	182.1	180.0
C13	C15	H15	N16	238.3	240.1
H15	C15	C13	H13	182.6	180.0
H15	C15	C13	H13A	61.1	60.0
C13	C15	H15	H15A	119.1	120.0
N16	C15	H15	H15A	240.9	240.0
H15	C15	N16	HN16	241.8	296.0
H15	C15	N16	HN1A	1.8	60.0
C13	C15	H15A	N16	121.2	120.0
H15A	C15	C13	H13	303.5	300.0
H15A	C15	C13	H13A	182.1	180.0
C13	C15	H15A	H15	240.6	240.0
N16	C15	H15A	H15	119.4	120.0
H15A	C15	N16	HN16	120.8	176.0
H15A	C15	N16	HN1A	240.8	300.0
HO9	O9	C4	C1	222.3	270.2
H12	C12	C7	C3	179.7	180.6
C7	C12	H12	C8	180.0	180.0
H12	C12	C8	H8	0.4	0.0
HN16	N16	C15	H15	241.8	296.0
HN16	N16	C15	H15A	120.8	176.0
C15	N16	HN16	HN1A	120.0	124.0
HN1A	N16	C15	H15	1.8	60.0
HN1A	N16	C15	H15A	240.8	300.0
C15	N16	HN1A	HN16	240.0	236.0
C7	C3	H3	C1	180.0	179.7
H3	C3	C1	C2	0.2	0.2
C5	C2	H2	C6	121.7	120.1
C5	C2	H2	C1	241.1	240.0
H2	C2	C5	H5	170.9	180.0
H2	C2	C5	H5A	50.0	59.9
H2	C2	C6	C11	81.7	60.1
C6	C2	H2	C1	119.4	119.9
H2	C2	C6	H6	201.7	180.0
H2	C2	C6	H6A	324.6	300.0
C10	C14	H14	C11	239.7	240.0
H14	C14	C10	H10	65.5	60.0
H14	C14	C10	H10A	306.1	300.0
C10	C14	H14	H14A	119.9	120.0
C11	C14	H14	H14A	240.2	239.9
H14	C14	C11	H11	66.1	60.0
H14	C14	C11	H11A	304.3	300.0
C10	C14	H14A	C11	120.2	120.0
H14A	C14	C10	H10	185.7	180.0
H14A	C14	C10	H10A	66.3	60.0
C10	C14	H14A	H14	240.1	240.0
C11	C14	H14A	H14	119.9	120.0
H14A	C14	C11	H11	306.0	300.0
H14A	C14	C11	H11A	184.2	180.0
C6	C11	H11	C14	236.6	240.0
H11	C11	C6	H6	38.5	60.0
H11	C11	C6	H6A	275.6	300.0
C6	C11	H11	H11A	118.3	120.0
H11	C11	C14	H14	66.1	60.0
H11	C11	C14	H14A	306.0	300.0
C14	C11	H11	H11A	241.7	240.0
C6	C11	H11A	C14	122.3	120.0
H11A	C11	C6	H6	160.3	180.0
H11A	C11	C6	H6A	37.4	60.0
C6	C11	H11A	H11	241.1	240.0
H11A	C11	C14	H14	304.3	300.0
H11A	C11	C14	H14A	184.2	180.0
C14	C11	H11A	H11	118.9	120.0