PDB Chemical Component AE5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AE5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O15 |
C14 |
1.275 |
1.208 |
| O16 |
C14 |
1.270 |
1.342 |
| C14 |
C06 |
1.510 |
1.508 |
| C06 |
N07 |
1.410 |
1.468 |
| C06 |
C05 |
1.536 |
1.530 |
| N10 |
C09 |
1.415 |
1.469 |
| N07 |
C08 |
1.439 |
1.468 |
| C09 |
C08 |
1.536 |
1.530 |
| C09 |
C11 |
1.515 |
1.507 |
| C04 |
C05 |
1.511 |
1.531 |
| C04 |
C02 |
1.519 |
1.507 |
| C11 |
O13 |
1.244 |
1.209 |
| C11 |
O12 |
1.271 |
1.342 |
| C02 |
O01 |
1.260 |
1.208 |
| C02 |
O03 |
1.257 |
1.343 |
| O03 |
H1 |
0.950 |
0.966 |
| C04 |
H2 |
1.100 |
1.090 |
| C04 |
H3 |
1.100 |
1.089 |
| C05 |
H4 |
1.100 |
1.090 |
| C05 |
H5 |
1.100 |
1.090 |
| C06 |
H6 |
1.100 |
1.090 |
| N07 |
H7 |
1.000 |
1.009 |
| C08 |
H9 |
1.100 |
1.090 |
| C08 |
H10 |
1.100 |
1.090 |
| C09 |
H11 |
1.100 |
1.090 |
| N10 |
H12 |
1.000 |
1.009 |
| N10 |
H13 |
1.000 |
1.009 |
| O12 |
H15 |
0.950 |
0.967 |
| O16 |
H16 |
0.950 |
0.966 |
Bond Angles for AE5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C06 |
H6 |
108.7 |
109.4 |
| C06 |
N07 |
C08 |
109.5 |
111.0 |
| N07 |
C06 |
H6 |
110.1 |
109.5 |
| C06 |
N07 |
H7 |
109.5 |
111.0 |
| C06 |
C05 |
H4 |
109.4 |
109.5 |
| C06 |
C05 |
H5 |
109.4 |
109.5 |
| N10 |
C09 |
C11 |
109.4 |
109.5 |
| N10 |
C09 |
H11 |
110.4 |
109.5 |
| C08 |
N07 |
H7 |
109.4 |
111.0 |
| N07 |
C08 |
H9 |
109.5 |
109.5 |
| N07 |
C08 |
H10 |
109.5 |
109.5 |
| C09 |
C08 |
H9 |
109.5 |
109.5 |
| C09 |
C08 |
H10 |
109.5 |
109.5 |
| C09 |
C11 |
O13 |
119.8 |
120.0 |
| C09 |
C11 |
O12 |
120.2 |
120.0 |
| C11 |
C09 |
H11 |
109.0 |
109.5 |
| C05 |
C04 |
H2 |
109.2 |
109.5 |
| C05 |
C04 |
H3 |
109.3 |
109.4 |
| C04 |
C05 |
H4 |
109.5 |
109.5 |
| C04 |
C05 |
H5 |
109.5 |
109.4 |
| O12 |
C11 |
O13 |
120.0 |
120.0 |
| C11 |
O12 |
H15 |
109.5 |
117.0 |
| C02 |
O03 |
H1 |
109.5 |
117.0 |
| H2 |
C04 |
H3 |
109.4 |
109.5 |
| H4 |
C05 |
H5 |
109.5 |
109.5 |
| H9 |
C08 |
H10 |
109.5 |
109.5 |
| H12 |
N10 |
H13 |
109.5 |
111.1 |
Torsion Angles for AE5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
C14 |
C06 |
H6 |
285.0 |
239.9 |
| O16 |
C14 |
C06 |
H6 |
104.9 |
60.0 |
| N07 |
C06 |
C14 |
H6 |
120.3 |
120.0 |
| C14 |
C06 |
N07 |
H7 |
322.3 |
39.0 |
| C14 |
C06 |
C05 |
H4 |
195.4 |
54.9 |
| C14 |
C06 |
C05 |
H5 |
315.3 |
294.9 |
| C14 |
C06 |
N07 |
H6 |
240.6 |
240.1 |
| N07 |
C06 |
C05 |
H4 |
316.1 |
174.9 |
| N07 |
C06 |
C05 |
H5 |
76.0 |
54.9 |
| C08 |
N07 |
C06 |
H7 |
240.0 |
236.0 |
| C06 |
N07 |
C08 |
H9 |
281.1 |
300.0 |
| C06 |
N07 |
C08 |
H10 |
41.1 |
60.0 |
| C06 |
C05 |
C04 |
H2 |
260.3 |
60.0 |
| C06 |
C05 |
C04 |
H3 |
19.9 |
300.0 |
| C04 |
C05 |
C06 |
H4 |
240.0 |
120.0 |
| C04 |
C05 |
C06 |
H5 |
120.0 |
240.1 |
| H4 |
C05 |
C06 |
H5 |
240.1 |
120.0 |
| N10 |
C09 |
C08 |
H9 |
136.0 |
185.0 |
| N10 |
C09 |
C08 |
H10 |
16.0 |
65.0 |
| N10 |
C09 |
C11 |
O13 |
342.9 |
340.1 |
| N10 |
C09 |
C11 |
O12 |
162.8 |
160.0 |
| C11 |
C09 |
N10 |
H11 |
240.0 |
240.0 |
| C08 |
N07 |
C06 |
H6 |
321.8 |
34.9 |
| C06 |
N07 |
C08 |
H7 |
120.0 |
124.0 |
| C09 |
C08 |
N07 |
H9 |
240.0 |
240.0 |
| C09 |
C08 |
N07 |
H10 |
120.0 |
120.0 |
| H9 |
C08 |
N07 |
H10 |
240.0 |
240.0 |
| C09 |
C08 |
N07 |
H7 |
41.1 |
56.0 |
| N07 |
C08 |
C09 |
H9 |
120.0 |
120.0 |
| N07 |
C08 |
C09 |
H10 |
240.0 |
240.0 |
| H9 |
C08 |
C09 |
H10 |
120.0 |
120.0 |
| N10 |
C09 |
C11 |
H11 |
120.9 |
120.0 |
| C11 |
C09 |
C08 |
H9 |
15.9 |
65.0 |
| C11 |
C09 |
C08 |
H10 |
255.9 |
305.0 |
| O12 |
C11 |
C09 |
O13 |
179.8 |
180.0 |
| C09 |
C11 |
O12 |
H15 |
180.2 |
180.0 |
| C06 |
C05 |
C04 |
H4 |
120.0 |
239.9 |
| C06 |
C05 |
C04 |
H5 |
240.0 |
120.0 |
| H2 |
C04 |
C05 |
H3 |
240.3 |
120.0 |
| H4 |
C05 |
C04 |
H5 |
120.0 |
240.0 |
| C04 |
C02 |
O03 |
H1 |
180.1 |
180.3 |
| C09 |
C11 |
O13 |
O12 |
179.8 |
180.0 |
| O13 |
C11 |
C09 |
H11 |
222.1 |
220.0 |
| O13 |
C11 |
O12 |
H15 |
360.0 |
360.0 |
| C09 |
C11 |
O12 |
O13 |
180.2 |
180.0 |
| O12 |
C11 |
C09 |
H11 |
41.9 |
40.0 |
| C05 |
C04 |
H2 |
H3 |
119.6 |
240.0 |
| H2 |
C04 |
C05 |
H4 |
140.3 |
180.0 |
| H2 |
C04 |
C05 |
H5 |
20.3 |
300.0 |
| C05 |
C04 |
H3 |
H2 |
240.4 |
120.0 |
| H3 |
C04 |
C05 |
H4 |
259.9 |
60.0 |
| H3 |
C04 |
C05 |
H5 |
139.9 |
180.0 |
| C06 |
C05 |
H4 |
H5 |
119.9 |
240.0 |
| H4 |
C05 |
C04 |
H2 |
140.3 |
180.0 |
| H4 |
C05 |
C04 |
H3 |
259.9 |
60.0 |
| C04 |
C05 |
H4 |
H5 |
240.0 |
120.0 |
| C06 |
C05 |
H5 |
H4 |
240.1 |
120.0 |
| H5 |
C05 |
C04 |
H2 |
20.3 |
300.0 |
| H5 |
C05 |
C04 |
H3 |
139.9 |
180.0 |
| C04 |
C05 |
H5 |
H4 |
120.0 |
240.0 |
| H6 |
C06 |
N07 |
C08 |
321.8 |
34.9 |
| H6 |
C06 |
N07 |
H7 |
81.8 |
159.0 |
| H6 |
C06 |
C05 |
H4 |
76.3 |
295.0 |
| H6 |
C06 |
C05 |
H5 |
196.2 |
175.0 |
| C06 |
N07 |
H7 |
C08 |
240.0 |
236.0 |
| H7 |
N07 |
C06 |
H6 |
81.8 |
159.0 |
| H7 |
N07 |
C08 |
H9 |
161.1 |
176.0 |
| H7 |
N07 |
C08 |
H10 |
281.2 |
296.0 |
| H9 |
C08 |
N07 |
H7 |
161.1 |
176.0 |
| N07 |
C08 |
H9 |
H10 |
120.1 |
120.0 |
| C09 |
C08 |
H9 |
H10 |
240.0 |
240.0 |
| H10 |
C08 |
N07 |
H7 |
281.2 |
296.0 |
| N07 |
C08 |
H10 |
H9 |
240.0 |
240.0 |
| C09 |
C08 |
H10 |
H9 |
120.0 |
120.0 |
| N10 |
C09 |
H11 |
C11 |
239.8 |
240.0 |
| H11 |
C09 |
C08 |
H9 |
256.7 |
305.0 |
| H11 |
C09 |
C08 |
H10 |
136.7 |
185.0 |
| H11 |
C09 |
C11 |
O13 |
222.1 |
220.0 |
| H11 |
C09 |
C11 |
O12 |
41.9 |
40.0 |
| H12 |
N10 |
C09 |
C11 |
300.3 |
60.0 |
| H12 |
N10 |
C09 |
H11 |
60.3 |
180.0 |
| H13 |
N10 |
C09 |
C11 |
60.3 |
184.0 |
| H13 |
N10 |
C09 |
H11 |
180.3 |
304.0 |
| H15 |
O12 |
C11 |
O13 |
360.0 |
360.0 |