PDB Chemical Component ADZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ADZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N9 |
C8 |
1.361 |
1.363 |
| N9 |
C4 |
1.327 |
1.372 |
| N9 |
C1' |
1.512 |
1.465 |
| C8 |
N7 |
1.360 |
1.301 |
| C8 |
H8 |
1.062 |
1.081 |
| N7 |
C5 |
1.335 |
1.355 |
| C5 |
C6 |
1.446 |
1.405 |
| C5 |
C4 |
1.441 |
1.404 |
| C6 |
N6 |
1.353 |
1.383 |
| C6 |
N1 |
1.396 |
1.329 |
| N6 |
H6N1 |
0.995 |
0.971 |
| N6 |
H6N2 |
0.995 |
0.971 |
| N1 |
C2 |
1.375 |
1.320 |
| C2 |
N3 |
1.378 |
1.315 |
| C2 |
H2 |
1.062 |
1.080 |
| N3 |
C4 |
1.392 |
1.329 |
| C1' |
H1'1 |
1.100 |
1.090 |
| C1' |
H1'2 |
1.101 |
1.090 |
| C1' |
H1'3 |
1.100 |
1.089 |
Bond Angles for ADZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
N9 |
C4 |
108.3 |
107.4 |
| C8 |
N9 |
C1' |
127.6 |
126.3 |
| N9 |
C8 |
N7 |
109.4 |
110.0 |
| N9 |
C8 |
H8 |
125.3 |
125.0 |
| C4 |
N9 |
C1' |
124.1 |
126.3 |
| N9 |
C4 |
C5 |
107.3 |
106.0 |
| N9 |
C4 |
N3 |
132.9 |
134.9 |
| N9 |
C1' |
H1'1 |
109.5 |
109.5 |
| N9 |
C1' |
H1'2 |
109.5 |
109.4 |
| N9 |
C1' |
H1'3 |
109.5 |
109.5 |
| N7 |
C8 |
H8 |
125.3 |
125.0 |
| C8 |
N7 |
C5 |
108.2 |
109.4 |
| N7 |
C5 |
C6 |
137.1 |
134.6 |
| N7 |
C5 |
C4 |
106.8 |
107.2 |
| C6 |
C5 |
C4 |
116.1 |
118.2 |
| C5 |
C6 |
N6 |
120.5 |
120.8 |
| C5 |
C6 |
N1 |
120.4 |
118.4 |
| C5 |
C4 |
N3 |
119.9 |
119.1 |
| N6 |
C6 |
N1 |
119.0 |
120.7 |
| C6 |
N6 |
H6N1 |
120.0 |
120.1 |
| C6 |
N6 |
H6N2 |
120.0 |
120.0 |
| C6 |
N1 |
C2 |
122.2 |
121.2 |
| H6N1 |
N6 |
H6N2 |
120.0 |
120.0 |
| N1 |
C2 |
N3 |
118.3 |
122.5 |
| N1 |
C2 |
H2 |
120.8 |
118.8 |
| N3 |
C2 |
H2 |
120.9 |
118.8 |
| C2 |
N3 |
C4 |
123.1 |
120.6 |
| H1'1 |
C1' |
H1'2 |
109.5 |
109.4 |
| H1'1 |
C1' |
H1'3 |
109.5 |
109.5 |
| H1'2 |
C1' |
H1'3 |
109.5 |
109.5 |
Torsion Angles for ADZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
N9 |
C8 |
C1' |
180.4 |
180.2 |
| C8 |
N9 |
C4 |
C5 |
359.7 |
359.7 |
| C8 |
N9 |
C4 |
N3 |
180.4 |
180.4 |
| C8 |
N9 |
C1' |
H1'1 |
31.1 |
90.0 |
| C8 |
N9 |
C1' |
H1'2 |
151.1 |
210.0 |
| C8 |
N9 |
C1' |
H1'3 |
271.1 |
330.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
N7 |
C5 |
0.1 |
360.0 |
| C8 |
N9 |
C4 |
C1' |
179.6 |
179.8 |
| C4 |
N9 |
C8 |
N7 |
0.2 |
0.2 |
| C4 |
N9 |
C8 |
H8 |
180.2 |
180.2 |
| C4 |
N9 |
C1' |
H1'1 |
210.7 |
269.8 |
| C4 |
N9 |
C1' |
H1'2 |
330.7 |
29.7 |
| C4 |
N9 |
C1' |
H1'3 |
90.7 |
149.8 |
| N7 |
C5 |
C4 |
N9 |
0.3 |
0.3 |
| C6 |
C5 |
C4 |
N9 |
179.8 |
180.1 |
| C5 |
C4 |
N9 |
N3 |
179.3 |
179.4 |
| C2 |
N3 |
C4 |
N9 |
179.9 |
179.7 |
| C8 |
N9 |
C1' |
C4 |
180.4 |
180.2 |
| C1' |
N9 |
C8 |
N7 |
179.8 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
359.8 |
-0.0 |
| C1' |
N9 |
C4 |
C5 |
180.0 |
179.9 |
| C1' |
N9 |
C4 |
N3 |
0.7 |
0.5 |
| H1'1 |
C1' |
N9 |
H1'2 |
240.0 |
240.1 |
| H1'1 |
C1' |
N9 |
H1'3 |
120.0 |
120.0 |
| H1'2 |
C1' |
N9 |
H1'3 |
240.0 |
239.9 |
| N7 |
C8 |
N9 |
C4 |
0.2 |
0.2 |
| N7 |
C8 |
N9 |
C1' |
179.8 |
180.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C8 |
N7 |
C5 |
C6 |
180.5 |
180.0 |
| C8 |
N7 |
C5 |
C4 |
359.8 |
359.8 |
| H8 |
C8 |
N9 |
C4 |
180.2 |
180.2 |
| H8 |
C8 |
N9 |
C1' |
359.8 |
360.0 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
| H8 |
C8 |
N7 |
C5 |
180.0 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
0.3 |
0.3 |
| C5 |
N7 |
C8 |
H8 |
180.0 |
180.0 |
| C6 |
C5 |
N7 |
C4 |
180.7 |
180.2 |
| N7 |
C5 |
C6 |
N6 |
359.5 |
360.0 |
| N7 |
C5 |
C6 |
N1 |
179.9 |
180.0 |
| N7 |
C5 |
C4 |
N3 |
179.7 |
179.8 |
| N9 |
C4 |
C5 |
C6 |
179.8 |
180.1 |
| N7 |
C5 |
C6 |
C4 |
179.2 |
179.8 |
| C6 |
C5 |
C4 |
N3 |
359.2 |
359.6 |
| N6 |
C6 |
C5 |
N1 |
179.7 |
180.0 |
| C5 |
C6 |
N6 |
H6N1 |
360.0 |
180.0 |
| C5 |
C6 |
N6 |
H6N2 |
180.0 |
-0.0 |
| C5 |
C6 |
N1 |
C2 |
359.6 |
-0.0 |
| C5 |
C4 |
N9 |
C1' |
180.0 |
179.9 |
| N9 |
C4 |
C5 |
N3 |
180.6 |
180.5 |
| N7 |
C5 |
C4 |
C6 |
180.5 |
180.1 |
| C4 |
C5 |
C6 |
N6 |
180.3 |
180.2 |
| C4 |
C5 |
C6 |
N1 |
0.6 |
0.2 |
| C2 |
N3 |
C4 |
C5 |
0.7 |
0.4 |
| N6 |
C6 |
C5 |
C4 |
180.3 |
180.2 |
| C5 |
C6 |
N6 |
N1 |
180.3 |
180.0 |
| N6 |
C6 |
N1 |
C2 |
180.0 |
180.0 |
| H6N1 |
N6 |
C6 |
H6N2 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
0.6 |
0.2 |
| C5 |
C6 |
N1 |
N6 |
179.7 |
180.0 |
| N1 |
C6 |
N6 |
H6N1 |
179.7 |
-0.0 |
| N1 |
C6 |
N6 |
H6N2 |
359.7 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
360.0 |
| C6 |
N1 |
C2 |
H2 |
180.2 |
179.9 |
| H6N1 |
N6 |
C6 |
N1 |
179.7 |
360.0 |
| C6 |
N6 |
H6N1 |
H6N2 |
180.0 |
180.0 |
| H6N2 |
N6 |
C6 |
N1 |
359.7 |
180.0 |
| C6 |
N6 |
H6N2 |
H6N1 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| N1 |
C2 |
N3 |
C4 |
359.6 |
359.8 |
| N9 |
C4 |
N3 |
C2 |
179.9 |
179.7 |
| C5 |
C4 |
N3 |
C2 |
0.7 |
0.4 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.1 |
| H2 |
C2 |
N3 |
C4 |
179.6 |
179.9 |
| N3 |
C4 |
N9 |
C1' |
0.7 |
0.5 |
| N9 |
C4 |
N3 |
C5 |
179.2 |
179.3 |
| C4 |
N3 |
C2 |
H2 |
179.6 |
179.9 |
| N9 |
C1' |
H1'1 |
H1'2 |
120.0 |
119.9 |
| N9 |
C1' |
H1'1 |
H1'3 |
240.0 |
240.0 |
| H1'2 |
C1' |
H1'1 |
H1'3 |
120.0 |
120.0 |
| N9 |
C1' |
H1'2 |
H1'1 |
240.0 |
240.1 |
| N9 |
C1' |
H1'2 |
H1'3 |
120.0 |
120.1 |
| H1'1 |
C1' |
H1'2 |
H1'3 |
240.0 |
240.0 |
| N9 |
C1' |
H1'3 |
H1'1 |
120.0 |
120.0 |
| N9 |
C1' |
H1'3 |
H1'2 |
240.0 |
240.0 |
| H1'1 |
C1' |
H1'3 |
H1'2 |
120.0 |
120.0 |