PDB Chemical Component ADX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ADX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
SB O1B 1.483 1.421
SB O2B 1.614 1.420
SB O3B 1.487 1.522
SB O3A 1.511 1.522
O3B HOB3 0.949 0.967
PA O1A 1.466 1.480
PA O2A 1.483 1.610
PA O3A 1.556 1.609
PA O5' 1.604 1.609
O2A HOA2 0.951 0.966
O5' C5' 1.438 1.429
C5' C4' 1.547 1.528
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.437 1.444
C4' C3' 1.520 1.545
C4' H4' 1.114 1.089
O4' C1' 1.438 1.445
C3' O3' 1.427 1.428
C3' C2' 1.494 1.546
C3' H3' 1.115 1.090
O3' HO3' 0.951 0.966
C2' O2' 1.434 1.429
C2' C1' 1.503 1.543
C2' H2' 1.116 1.090
O2' HO2' 0.951 0.967
C1' N9 1.475 1.464
C1' H1' 1.114 1.090
N9 C8 1.324 1.364
N9 C4 1.313 1.372
C8 N7 1.325 1.301
C8 H8 1.103 1.080
N7 C5 1.306 1.355
C5 C6 1.402 1.405
C5 C4 1.403 1.404
C6 N6 1.346 1.384
C6 N1 1.362 1.329
N6 HN61 1.021 0.970
N6 HN62 1.021 0.970
N1 C2 1.347 1.320
C2 N3 1.339 1.316
C2 H2 1.103 1.079
N3 C4 1.350 1.329

Bond Angles for ADX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B SB O2B 112.2 125.4
O1B SB O3B 112.5 105.7
O1B SB O3A 106.8 105.7
O2B SB O3B 108.7 105.8
O2B SB O3A 105.3 105.8
O3B SB O3A 111.0 107.4
SB O3B HOB3 112.4 106.8
SB O3A PA 135.3 106.8
O1A PA O2A 114.3 109.4
O1A PA O3A 107.0 109.5
O1A PA O5' 110.6 109.4
O2A PA O3A 106.0 109.5
O2A PA O5' 110.1 109.5
PA O2A HOA2 114.3 106.9
O3A PA O5' 108.6 109.5
PA O5' C5' 121.8 106.9
O5' C5' C4' 109.7 109.5
O5' C5' H5' 112.1 109.5
O5' C5' H5'' 112.1 109.4
C4' C5' H5' 112.1 109.5
C4' C5' H5'' 112.2 109.5
C5' C4' O4' 110.7 110.3
C5' C4' C3' 113.3 110.5
C5' C4' H4' 104.7 110.4
H5' C5' H5'' 98.3 109.4
O4' C4' C3' 105.0 104.8
O4' C4' H4' 113.0 110.4
C4' O4' C1' 108.3 105.2
C3' C4' H4' 110.4 110.3
C4' C3' O3' 112.5 110.5
C4' C3' C2' 104.3 104.1
C4' C3' H3' 110.4 110.5
O4' C1' C2' 105.5 104.9
O4' C1' N9 108.5 110.4
O4' C1' H1' 114.8 110.4
O3' C3' C2' 107.6 110.6
O3' C3' H3' 107.2 110.5
C3' O3' HO3' 112.5 106.8
C2' C3' H3' 115.0 110.6
C3' C2' O2' 114.3 110.5
C3' C2' C1' 99.4 104.0
C3' C2' H2' 115.5 110.5
O2' C2' C1' 115.8 110.8
O2' C2' H2' 98.9 110.4
C2' O2' HO2' 114.2 106.8
C1' C2' H2' 113.9 110.4
C2' C1' N9 115.2 110.4
C2' C1' H1' 108.1 110.4
N9 C1' H1' 105.1 110.2
C1' N9 C8 125.1 126.2
C1' N9 C4 126.5 126.4
C8 N9 C4 108.4 107.4
N9 C8 N7 109.1 110.0
N9 C8 H8 125.5 125.0
N9 C4 C5 107.0 106.1
N9 C4 N3 133.7 134.9
N7 C8 H8 125.5 125.0
C8 N7 C5 109.0 109.5
N7 C5 C6 135.9 134.7
N7 C5 C4 106.6 107.1
C6 C5 C4 117.5 118.2
C5 C6 N6 120.9 120.8
C5 C6 N1 119.6 118.5
C5 C4 N3 119.3 119.0
N6 C6 N1 119.5 120.7
C6 N6 HN61 120.9 120.0
C6 N6 HN62 108.2 120.0
C6 N1 C2 121.9 121.1
HN61 N6 HN62 108.1 120.0
N1 C2 N3 118.8 122.5
N1 C2 H2 120.9 118.8
N3 C2 H2 120.3 118.8
C2 N3 C4 123.0 120.7

Torsion Angles for ADX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B SB O1B O3B 123.0 123.2
O2B SB O1B O3A 245.1 236.8
O3B SB O1B O3A 122.1 113.7
O1B SB O3B HOB3 180.0 67.4
O1B SB O3A PA 82.8 202.6
O1B SB O2B O3B 234.9 236.9
O1B SB O2B O3A 115.9 123.1
O3B SB O2B O3A 240.9 246.3
O2B SB O3B HOB3 55.1 292.6
O2B SB O3A PA 202.3 337.4
O1B SB O3B O2B 124.9 134.8
O1B SB O3B O3A 240.3 247.5
O2B SB O3B O3A 115.4 112.6
O3B SB O3A PA 319.8 90.0
O1B SB O3A O2B 240.5 225.2
O1B SB O3A O3B 123.0 112.5
O2B SB O3A O3B 242.5 247.3
O3A SB O3B HOB3 299.7 180.0
O1A PA O3A SB 73.0 300.0
O2A PA O3A SB 195.3 60.0
SB O3A PA O5' 313.6 180.0
HOB3 O3B SB O3A 299.7 180.0
SB O3A PA O1A 73.0 300.0
O2A PA O1A O3A 243.0 240.0
O2A PA O1A O5' 125.0 120.0
O1A PA O2A HOA2 180.0 180.0
O3A PA O1A O5' 241.9 239.9
O1A PA O5' C5' 310.0 60.0
SB O3A PA O2A 195.3 60.0
O1A PA O2A O3A 117.5 120.0
O1A PA O2A O5' 234.8 240.1
O3A PA O2A O5' 117.2 120.1
O2A PA O5' C5' 182.7 300.1
O1A PA O3A O2A 237.7 240.0
O1A PA O3A O5' 119.4 120.0
O2A PA O3A O5' 241.7 240.0
O3A PA O2A HOA2 62.4 60.0
O3A PA O5' C5' 67.0 180.0
O1A PA O5' O2A 127.3 119.9
O1A PA O5' O3A 242.9 240.0
O2A PA O5' O3A 115.6 120.0
O5' PA O2A HOA2 305.2 299.9
PA O5' C5' C4' 197.1 180.0
PA O5' C5' H5' 322.3 59.9
PA O5' C5' H5'' 71.8 300.0
HOA2 O2A PA O3A 62.4 60.0
HOA2 O2A PA O5' 305.2 299.9
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.3 239.9
O5' C5' C4' O4' 321.8 61.4
O5' C5' C4' C3' 79.5 176.9
O5' C5' C4' H4' 199.8 299.2
H5' C5' O5' H5'' 250.5 119.9
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.8 120.0
H5' C5' C4' H5'' 109.6 240.0
O4' C4' C5' C3' 242.4 244.6
O4' C4' C5' H4' 122.1 122.2
C5' C4' O4' C1' 123.5 159.5
C3' C4' C5' H4' 239.7 237.7
C5' C4' C3' O3' 147.4 98.3
C5' C4' C3' C2' 263.7 217.1
C5' C4' C3' H3' 27.7 335.8
O5' C5' H5' C4' 236.1 120.1
O5' C5' H5' H5'' 118.0 240.1
C4' C5' H5' H5'' 241.9 120.0
H5' C5' C4' O4' 196.6 181.5
H5' C5' C4' C3' 314.3 296.9
H5' C5' C4' H4' 74.6 59.2
O5' C5' H5'' C4' 123.9 239.9
O5' C5' H5'' H5' 242.0 119.9
C4' C5' H5'' H5' 118.1 240.0
H5'' C5' C4' O4' 87.1 301.4
H5'' C5' C4' C3' 204.7 56.9
H5'' C5' C4' H4' 325.0 179.2
O4' C4' C5' H5' 196.6 181.5
O4' C4' C5' H5'' 87.1 301.4
C5' C4' O4' C3' 122.6 119.0
C5' C4' O4' H4' 242.9 237.7
C3' C4' O4' H4' 120.4 118.8
O4' C4' C3' O3' 268.3 217.2
O4' C4' C3' C2' 24.6 335.9
O4' C4' C3' H3' 148.6 94.7
C4' O4' C1' C2' 333.8 319.5
C4' O4' C1' N9 209.9 200.6
C4' O4' C1' H1' 92.7 78.5
C3' C4' C5' H5' 314.3 296.9
C3' C4' C5' H5'' 204.7 56.9
C5' C4' C3' O4' 239.1 241.2
C5' C4' C3' H4' 117.0 122.4
O4' C4' C3' H4' 237.9 241.2
C3' C4' O4' C1' 0.9 40.5
O3' C3' C4' C2' 243.7 241.3
O3' C3' C4' H3' 119.6 122.5
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 236.0 241.3
C4' C3' C2' O2' 197.3 241.2
C4' C3' C2' C1' 321.3 0.1
C4' C3' C2' H2' 83.5 118.7
H4' C4' C5' H5' 74.6 59.2
H4' C4' C5' H5'' 325.0 179.2
C5' C4' H4' O4' 120.5 122.2
C5' C4' H4' C3' 237.8 237.6
O4' C4' H4' C3' 117.3 115.3
H4' C4' O4' C1' 240.6 281.7
H4' C4' C3' O3' 30.4 336.0
H4' C4' C3' C2' 146.7 94.7
H4' C4' C3' H3' 270.7 213.4
C1' O4' C4' C3' 0.9 40.5
C1' O4' C4' H4' 240.6 281.7
C3' C2' C1' O4' 40.0 23.9
O2' C2' C1' O4' 162.9 142.6
O4' C1' C2' H2' 276.6 265.3
C2' C1' O4' N9 123.9 119.0
C2' C1' O4' H1' 241.1 241.1
N9 C1' O4' H1' 117.2 122.1
O4' C1' N9 C8 36.8 27.1
O4' C1' N9 C4 217.9 207.0
O3' C3' C4' H4' 30.4 336.0
C4' C3' O3' C2' 114.3 114.7
C4' C3' O3' H3' 238.5 237.5
C2' C3' O3' H3' 124.2 122.8
O3' C3' C2' O2' 316.9 359.8
O3' C3' C2' C1' 80.9 118.8
O3' C3' C2' H2' 203.2 237.3
C2' C3' C4' H4' 146.7 94.7
C4' C3' C2' O3' 240.3 241.3
C4' C3' C2' H3' 121.0 118.6
O4' C1' C2' C3' 40.0 23.9
O3' C3' C2' H3' 240.7 237.3
C2' C3' O3' HO3' 65.6 65.4
O2' C2' C3' C1' 236.0 241.0
O2' C2' C3' H2' 113.7 122.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 237.7 241.5
C3' C2' C1' N9 159.6 142.8
C3' C2' C1' H1' 276.7 264.9
H3' C3' C4' H4' 270.7 213.4
C4' C3' H3' O3' 122.8 122.6
C4' C3' H3' C2' 242.4 245.3
O3' C3' H3' C2' 119.6 122.8
H3' C3' O3' HO3' 301.5 302.6
H3' C3' C2' O2' 76.2 122.5
H3' C3' C2' C1' 200.2 241.5
H3' C3' C2' H2' 322.5 0.0
HO3' O3' C3' C2' 65.6 65.4
HO3' O3' C3' H3' 301.5 302.6
O4' C1' C2' O2' 162.9 142.6
O2' C2' C3' H3' 76.2 122.5
C3' C2' O2' C1' 114.7 114.8
C3' C2' O2' H2' 236.7 237.4
C1' C2' O2' H2' 122.1 122.6
O2' C2' C1' N9 282.5 261.5
O2' C2' C1' H1' 39.6 23.7
O4' C1' C2' N9 240.4 241.1
O4' C1' C2' H1' 123.3 118.9
C1' C2' C3' H3' 200.2 241.5
C3' C2' C1' O2' 237.1 241.2
C3' C2' C1' H2' 123.4 118.6
O2' C2' C1' H2' 246.3 237.4
C1' C2' O2' HO2' 65.4 183.8
N9 C1' C2' H1' 242.9 237.8
C2' C1' N9 C8 278.9 271.5
C2' C1' N9 C4 100.0 91.5
H2' C2' C3' H3' 322.5 0.0
C3' C2' H2' O2' 122.4 122.5
C3' C2' H2' C1' 245.8 245.4
O2' C2' H2' C1' 123.5 122.9
H2' C2' O2' HO2' 303.3 61.2
H2' C2' C1' N9 36.2 24.2
H2' C2' C1' H1' 153.3 146.4
HO2' O2' C2' C1' 65.4 183.8
HO2' O2' C2' H2' 303.3 61.2
O4' C1' N9 C2' 118.0 115.6
O4' C1' N9 H1' 236.7 237.8
N9 C1' C2' H2' 36.2 24.2
C2' C1' N9 H1' 118.8 122.3
C8 N9 C1' C4 178.9 180.1
C1' N9 C8 N7 181.3 180.0
C1' N9 C8 H8 1.4 360.0
C1' N9 C4 C5 178.5 180.2
C1' N9 C4 N3 359.0 0.1
O4' C1' H1' C2' 242.5 244.5
O4' C1' H1' N9 119.1 122.2
H1' C1' C2' H2' 153.3 146.4
C2' C1' H1' N9 236.6 237.7
H1' C1' N9 C8 160.1 149.3
H1' C1' N9 C4 341.2 329.2
C8 N9 C1' H1' 160.1 149.3
C1' N9 C8 C4 180.9 179.9
C8 N9 C4 C5 359.4 0.2
C8 N9 C4 N3 180.0 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 360.0 359.7
C4 N9 C1' H1' 341.2 329.2
C1' N9 C4 C8 179.1 180.1
C4 N9 C8 N7 0.4 0.0
C4 N9 C8 H8 180.4 180.0
N7 C5 C4 N9 0.5 359.7
C6 C5 C4 N9 180.7 180.4
C5 C4 N9 N3 179.5 180.1
C2 N3 C4 N9 179.5 180.0
N7 C8 N9 C4 0.4 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.5 179.5
C8 N7 C5 C4 359.7 0.4
H8 C8 N9 C4 180.4 180.0
N9 C8 H8 N7 179.9 180.0
H8 C8 N7 C5 179.9 179.7
N9 C4 C5 N7 0.5 359.7
C5 N7 C8 H8 179.9 179.7
C6 C5 N7 C4 179.8 179.1
N7 C5 C6 N6 359.7 0.8
N7 C5 C6 N1 179.9 180.4
N7 C5 C4 N3 180.1 179.7
N9 C4 C5 C6 180.7 180.4
N7 C5 C6 C4 180.3 181.0
C6 C5 C4 N3 0.3 0.5
N6 C6 C5 N1 179.8 180.4
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.8 359.3
C5 C6 N1 C2 0.0 0.3
N9 C4 C5 N3 180.4 179.9
N7 C5 C4 C6 179.8 179.3
C4 C5 C6 N6 179.5 179.8
C4 C5 C6 N1 359.7 359.4
C2 N3 C4 C5 0.1 359.9
N6 C6 C5 C4 179.5 179.8
C5 C6 N6 N1 180.2 179.6
N6 C6 N1 C2 180.2 179.9
HN61 N6 C6 HN62 125.2 180.4
N1 C6 C5 C4 359.7 359.4
C5 C6 N1 N6 179.8 180.4
N1 C6 N6 HN61 359.8 0.1
N1 C6 N6 HN62 234.6 179.8
C6 N1 C2 N3 0.3 0.0
C6 N1 C2 H2 180.4 179.9
HN61 N6 C6 N1 359.8 0.1
C6 N6 HN61 HN62 234.7 179.6
HN62 N6 C6 N1 234.6 179.8
C6 N6 HN62 HN61 132.5 180.4
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 359.6 359.9
N9 C4 N3 C2 179.5 180.0
C5 C4 N3 C2 0.1 359.9
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 179.6 180.0
N9 C4 N3 C5 179.4 180.1
C4 N3 C2 H2 179.6 180.0