PDB Chemical Component ADS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ADS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P   1.509
P S2P   2.107
P S3P   2.107
P O5'   1.627
S2P HSP2   1.340
S3P HSP3   1.341
O5' C5' 1.412 1.417
C5' C4' 1.471 1.519
C5' H5'1 1.100 1.091
C5' H5'2 1.100 1.092
C4' O4' 1.402 1.436
C4' C3' 1.485 1.519
C4' H4' 1.100 1.096
O4' C1' 1.416 1.444
C3' O3' 1.418 1.412
C3' C2' 1.485 1.517
C3' H3' 1.100 1.097
O3' HO3' 0.950 0.969
C2' O2'   1.427
C2' C1' 1.519 1.529
C2' H2' 1.099 1.094
O2' HO2'   0.974
C1' N9 1.449 1.464
C1' H1' 1.100 1.095
N9 C8 1.350 1.371
N9 C4 1.378 1.367
C8 N7 1.310 1.317
C8 H8 1.080 1.082
N7 C5 1.409 1.372
C5 C6 1.413 1.391
C5 C4 1.366 1.386
C6 N6 1.324 1.406
C6 N1 1.334 1.355
N6 HN61 1.000 1.002
N6 HN62 1.000 1.002
N1 C2 1.320 1.355
C2 N3 1.310 1.351
C2 H2 1.080 1.085
N3 C4 1.343 1.342

Bond Angles for ADS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P S2P   108.8
O1P P S3P   108.6
O1P P O5'   110.2
S2P P S3P   109.8
S2P P O5'   109.9
P S2P HSP2   98.0
S3P P O5'   109.6
P S3P HSP3   97.9
P O5' C5'   120.2
O5' C5' C4' 102.6 108.7
O5' C5' H5'1 111.9 109.2
O5' C5' H5'2 113.3 109.2
C4' C5' H5'1 111.9 110.1
C4' C5' H5'2 113.3 110.1
C5' C4' O4' 112.2 109.8
C5' C4' C3' 114.5 113.5
C5' C4' H4' 104.4 108.7
H5'1 C5' H5'2 104.3 109.6
O4' C4' C3' 111.1 105.2
O4' C4' H4' 108.3 108.3
C4' O4' C1' 105.6 108.3
C3' C4' H4' 105.7 111.2
C4' C3' O3' 102.4 112.1
C4' C3' C2' 101.2 102.3
C4' C3' H3' 118.0 110.2
O4' C1' C2' 108.8 107.6
O4' C1' N9 112.3 109.4
O4' C1' H1' 108.2 108.3
O3' C3' C2' 107.3 113.5
O3' C3' H3' 112.8 109.0
C3' O3' HO3' 109.5 106.3
C2' C3' H3' 113.8 109.6
C3' C2' O2'   111.2
C3' C2' C1' 102.4 102.8
C3' C2' H2' 145.8 112.6
O2' C2' C1'   109.2
O2' C2' H2'   106.9
C2' O2' HO2'   107.3
C1' C2' H2' 111.8 114.1
C2' C1' N9 110.0 113.6
C2' C1' H1' 110.5 112.6
N9 C1' H1' 107.0 105.2
C1' N9 C8 130.8 126.1
C1' N9 C4 124.6 126.9
C8 N9 C4 104.2 106.9
N9 C8 N7 116.7 112.2
N9 C8 H8 121.6 122.2
N9 C4 C5 106.8 105.2
N9 C4 N3 126.9 127.5
N7 C8 H8 121.7 125.6
C8 N7 C5 101.4 104.8
N7 C5 C6 132.8 132.4
N7 C5 C4 110.8 110.8
C6 C5 C4 116.5 116.8
C5 C6 N6 122.0 120.7
C5 C6 N1 117.4 119.1
C5 C4 N3 126.3 127.3
N6 C6 N1 120.5 120.2
C6 N6 HN61 109.5 119.5
C6 N6 HN62 109.5 119.4
C6 N1 C2 119.6 117.5
HN61 N6 HN62 109.4 120.8
N1 C2 N3 128.4 128.9
N1 C2 H2 115.8 115.5
N3 C2 H2 115.8 115.6
C2 N3 C4 111.7 110.4

Torsion Angles for ADS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2P P O1P S3P   119.4
S2P P O1P O5'   239.5
O1P P S2P HSP2   61.3
S3P P O1P O5'   120.1
O1P P S3P HSP3   299.2
O1P P O5' C5'   180.0
O1P P S2P S3P   241.3
O1P P S2P O5'   120.7
S3P P S2P O5'   239.4
S2P P S3P HSP3   180.4
S2P P O5' C5'   299.8
O1P P S3P S2P   118.8
O1P P S3P O5'   239.6
S2P P S3P O5'   120.8
S3P P S2P HSP2   179.9
S3P P O5' C5'   60.5
O1P P O5' S2P   240.2
O1P P O5' S3P   119.5
S2P P O5' S3P   239.3
O5' P S2P HSP2   300.6
O5' P S3P HSP3   59.6
P O5' C5' C4'   210.0
P O5' C5' H5'1   330.1
P O5' C5' H5'2   89.9
HSP2 S2P P S3P   179.9
HSP2 S2P P O5'   300.6
HSP3 S3P P O5'   59.6
C4' C5' O5' H5'1 240.0 239.9
C4' C5' O5' H5'2 122.5 120.1
O5' C5' C4' O4' 142.3 62.1
O5' C5' C4' C3' 270.2 179.5
O5' C5' C4' H4' 25.3 303.8
H5'1 C5' O5' H5'2 242.5 240.2
O5' C5' C4' H5'1 120.0 119.6
O5' C5' C4' H5'2 237.5 240.5
H5'1 C5' C4' H5'2 117.5 120.9
O4' C4' C5' C3' 232.1 242.6
O4' C4' C5' H4' 117.1 118.3
C5' C4' O4' C1' 116.7 148.9
C3' C4' C5' H4' 244.9 235.7
C5' C4' C3' O3' 150.0 81.0
C5' C4' C3' C2' 260.7 202.9
C5' C4' C3' H3' 25.5 319.4
O5' C5' H5'1 C4' 245.6 240.8
O5' C5' H5'1 H5'2 122.8 119.5
C4' C5' H5'1 H5'2 237.2 238.8
H5'1 C5' C4' O4' 22.3 302.6
H5'1 C5' C4' C3' 150.2 60.0
H5'1 C5' C4' H4' 265.3 184.3
O5' C5' H5'2 C4' 116.3 119.2
O5' C5' H5'2 H5'1 238.1 240.5
C4' C5' H5'2 H5'1 121.8 121.2
H5'2 C5' C4' O4' 264.8 181.7
H5'2 C5' C4' C3' 32.7 299.0
H5'2 C5' C4' H4' 147.8 63.4
O4' C4' C5' H5'1 22.3 302.6
O4' C4' C5' H5'2 264.8 181.7
C5' C4' O4' C3' 129.6 122.4
C5' C4' O4' H4' 245.3 241.5
C3' C4' O4' H4' 115.6 119.1
O4' C4' C3' O3' 278.4 201.0
O4' C4' C3' C2' 29.1 322.9
O4' C4' C3' H3' 153.9 79.4
C4' O4' C1' C2' 351.3 354.9
C4' O4' C1' N9 229.3 231.0
C4' O4' C1' H1' 111.4 116.8
C3' C4' C5' H5'1 150.2 60.0
C3' C4' C5' H5'2 32.7 299.0
C5' C4' C3' O4' 231.6 240.0
C5' C4' C3' H4' 114.3 122.9
O4' C4' C3' H4' 242.8 242.9
C3' C4' O4' C1' 347.0 26.5
O3' C3' C4' C2' 249.3 238.1
O3' C3' C4' H3' 124.4 121.6
C4' C3' O3' HO3' 62.3 136.4
C2' C3' C4' H3' 235.2 243.5
C4' C3' C2' O2'   276.0
C4' C3' C2' C1' 328.5 32.8
C4' C3' C2' H2' 147.9 156.0
H4' C4' C5' H5'1 265.3 184.3
H4' C4' C5' H5'2 147.8 63.4
C5' C4' H4' O4' 119.7 119.2
C5' C4' H4' C3' 238.9 234.4
O4' C4' H4' C3' 119.2 115.2
H4' C4' O4' C1' 231.4 267.4
H4' C4' C3' O3' 35.6 318.1
H4' C4' C3' C2' 146.3 80.0
H4' C4' C3' H3' 271.2 196.5
C1' O4' C4' C3' 347.0 26.5
C1' O4' C4' H4' 231.4 267.4
C3' C2' C1' O4' 26.3 342.0
O2' C2' C1' O4'   100.1
O4' C1' C2' H2' 206.7 219.7
C2' C1' O4' N9 122.1 123.9
C2' C1' O4' H1' 239.9 238.0
N9 C1' O4' H1' 117.8 114.1
O4' C1' N9 C8 82.2 33.8
O4' C1' N9 C4 253.4 213.9
O3' C3' C4' H4' 35.6 318.1
C4' C3' O3' C2' 106.0 115.3
C4' C3' O3' H3' 232.2 237.7
C2' C3' O3' H3' 126.1 122.4
O3' C3' C2' O2'   36.9
O3' C3' C2' C1' 75.4 153.7
O3' C3' C2' H2' 254.8 276.9
C2' C3' C4' H4' 146.3 80.0
C4' C3' C2' O3' 253.1 239.1
C4' C3' C2' H3' 127.6 117.0
O4' C1' C2' C3' 26.3 342.0
O3' C3' C2' H3' 234.5 237.9
C2' C3' O3' HO3' 316.3 21.1
O2' C2' C3' C1'   243.2
O2' C2' C3' H2'   120.0
C3' C2' O2' HO2'   78.0
C1' C2' C3' H2' 180.6 236.8
C3' C2' C1' N9 149.8 103.3
C3' C2' C1' H1' 267.6 222.7
H3' C3' C4' H4' 271.2 196.5
C4' C3' H3' O3' 119.1 123.4
C4' C3' H3' C2' 241.7 248.2
O3' C3' H3' C2' 122.6 124.8
H3' C3' O3' HO3' 190.2 258.7
H3' C3' C2' O2'   159.0
H3' C3' C2' C1' 200.9 275.8
H3' C3' C2' H2' 20.3 39.0
HO3' O3' C3' C2' 316.3 21.1
HO3' O3' C3' H3' 190.2 258.7
O4' C1' C2' O2'   100.1
O2' C2' C3' H3'   159.0
C3' C2' O2' C1'   112.8
C3' C2' O2' H2'   236.7
C1' C2' O2' H2'   123.9
O2' C2' C1' N9   221.4
O2' C2' C1' H1'   340.8
O4' C1' C2' N9 236.6 238.7
O4' C1' C2' H1' 118.7 119.3
C1' C2' C3' H3' 200.9 275.8
C3' C2' C1' O2'   241.9
C3' C2' C1' H2' 179.6 122.3
O2' C2' C1' H2'   240.4
C1' C2' O2' HO2'   325.2
N9 C1' C2' H1' 242.1 240.6
C2' C1' N9 C8 320.8 273.6
C2' C1' N9 C4 132.0 93.7
H2' C2' C3' H3' 20.3 39.0
C3' C2' H2' O2'   122.4
C3' C2' H2' C1' 180.6 243.3
O2' C2' H2' C1'   120.9
H2' C2' O2' HO2'   201.3
H2' C2' C1' N9 330.1 341.0
H2' C2' C1' H1' 88.0 100.4
HO2' O2' C2' C1'   325.2
HO2' O2' C2' H2'   201.3
O4' C1' N9 C2' 121.4 120.3
O4' C1' N9 H1' 241.4 243.9
N9 C1' C2' H2' 330.1 341.0
C2' C1' N9 H1' 120.1 123.6
C8 N9 C1' C4 188.8 179.9
C1' N9 C8 N7 171.7 180.0
C1' N9 C8 H8 351.7 0.1
C1' N9 C4 C5 187.2 180.0
C1' N9 C4 N3 5.3 359.9
O4' C1' H1' C2' 240.9 241.1
O4' C1' H1' N9 121.2 116.9
H1' C1' C2' H2' 88.0 100.4
C2' C1' H1' N9 240.2 235.8
H1' C1' N9 C8 200.8 150.0
H1' C1' N9 C4 12.0 330.1
C8 N9 C1' H1' 200.8 150.0
C1' N9 C8 C4 172.5 180.1
C8 N9 C4 C5 0.3 0.0
C8 N9 C4 N3 178.4 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.9 0.0
C4 N9 C1' H1' 12.0 330.1
C1' N9 C4 C8 186.9 179.9
C4 N9 C8 N7 359.2 360.0
C4 N9 C8 H8 179.2 180.0
N7 C5 C4 N9 0.2 360.0
C6 C5 C4 N9 179.5 180.0
C5 C4 N9 N3 182.0 180.1
C2 N3 C4 N9 181.1 180.1
N7 C8 N9 C4 359.2 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.2 180.0
C8 N7 C5 C4 359.4 0.0
H8 C8 N9 C4 179.2 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.9 180.0
N9 C4 C5 N7 0.2 360.0
C5 N7 C8 H8 180.9 180.0
C6 C5 N7 C4 180.8 180.0
N7 C5 C6 N6 359.8 360.0
N7 C5 C6 N1 177.6 180.0
N7 C5 C4 N3 182.1 180.0
N9 C4 C5 C6 179.5 180.0
N7 C5 C6 C4 179.2 180.0
C6 C5 C4 N3 1.5 0.1
N6 C6 C5 N1 182.2 180.0
C5 C6 N6 HN61 15.0 45.0
C5 C6 N6 HN62 135.0 231.2
C5 C6 N1 C2 1.6 360.0
N9 C4 C5 N3 178.1 179.9
N7 C5 C4 C6 180.7 180.0
C4 C5 C6 N6 180.7 180.0
C4 C5 C6 N1 358.5 360.0
C2 N3 C4 C5 358.8 360.0
N6 C6 C5 C4 180.7 180.0
C5 C6 N6 N1 177.7 180.0
N6 C6 N1 C2 179.4 180.0
HN61 N6 C6 HN62 240.0 173.8
N1 C6 C5 C4 358.5 360.0
C5 C6 N1 N6 182.2 180.0
N1 C6 N6 HN61 197.3 225.0
N1 C6 N6 HN62 317.3 51.2
C6 N1 C2 N3 358.4 0.1
C6 N1 C2 H2 178.4 180.0
HN61 N6 C6 N1 197.3 225.0
C6 N6 HN61 HN62 120.0 186.3
HN62 N6 C6 N1 317.3 51.2
C6 N6 HN62 HN61 239.9 173.7
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 1.3 359.9
N9 C4 N3 C2 181.1 180.1
C5 C4 N3 C2 358.8 360.0
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 181.3 180.1
N9 C4 N3 C5 182.3 180.1
C4 N3 C2 H2 181.3 180.1