PDB Chemical Component ADS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ADS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
O1P |
|
1.509 |
P |
S2P |
|
2.107 |
P |
S3P |
|
2.107 |
P |
O5' |
|
1.627 |
S2P |
HSP2 |
|
1.340 |
S3P |
HSP3 |
|
1.341 |
O5' |
C5' |
1.412 |
1.417 |
C5' |
C4' |
1.471 |
1.519 |
C5' |
H5'1 |
1.100 |
1.091 |
C5' |
H5'2 |
1.100 |
1.092 |
C4' |
O4' |
1.402 |
1.436 |
C4' |
C3' |
1.485 |
1.519 |
C4' |
H4' |
1.100 |
1.096 |
O4' |
C1' |
1.416 |
1.444 |
C3' |
O3' |
1.418 |
1.412 |
C3' |
C2' |
1.485 |
1.517 |
C3' |
H3' |
1.100 |
1.097 |
O3' |
HO3' |
0.950 |
0.969 |
C2' |
O2' |
|
1.427 |
C2' |
C1' |
1.519 |
1.529 |
C2' |
H2' |
1.099 |
1.094 |
O2' |
HO2' |
|
0.974 |
C1' |
N9 |
1.449 |
1.464 |
C1' |
H1' |
1.100 |
1.095 |
N9 |
C8 |
1.350 |
1.371 |
N9 |
C4 |
1.378 |
1.367 |
C8 |
N7 |
1.310 |
1.317 |
C8 |
H8 |
1.080 |
1.082 |
N7 |
C5 |
1.409 |
1.372 |
C5 |
C6 |
1.413 |
1.391 |
C5 |
C4 |
1.366 |
1.386 |
C6 |
N6 |
1.324 |
1.406 |
C6 |
N1 |
1.334 |
1.355 |
N6 |
HN61 |
1.000 |
1.002 |
N6 |
HN62 |
1.000 |
1.002 |
N1 |
C2 |
1.320 |
1.355 |
C2 |
N3 |
1.310 |
1.351 |
C2 |
H2 |
1.080 |
1.085 |
N3 |
C4 |
1.343 |
1.342 |
Bond Angles for ADS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1P |
P |
S2P |
|
108.8 |
O1P |
P |
S3P |
|
108.6 |
O1P |
P |
O5' |
|
110.2 |
S2P |
P |
S3P |
|
109.8 |
S2P |
P |
O5' |
|
109.9 |
P |
S2P |
HSP2 |
|
98.0 |
S3P |
P |
O5' |
|
109.6 |
P |
S3P |
HSP3 |
|
97.9 |
P |
O5' |
C5' |
|
120.2 |
O5' |
C5' |
C4' |
102.6 |
108.7 |
O5' |
C5' |
H5'1 |
111.9 |
109.2 |
O5' |
C5' |
H5'2 |
113.3 |
109.2 |
C4' |
C5' |
H5'1 |
111.9 |
110.1 |
C4' |
C5' |
H5'2 |
113.3 |
110.1 |
C5' |
C4' |
O4' |
112.2 |
109.8 |
C5' |
C4' |
C3' |
114.5 |
113.5 |
C5' |
C4' |
H4' |
104.4 |
108.7 |
H5'1 |
C5' |
H5'2 |
104.3 |
109.6 |
O4' |
C4' |
C3' |
111.1 |
105.2 |
O4' |
C4' |
H4' |
108.3 |
108.3 |
C4' |
O4' |
C1' |
105.6 |
108.3 |
C3' |
C4' |
H4' |
105.7 |
111.2 |
C4' |
C3' |
O3' |
102.4 |
112.1 |
C4' |
C3' |
C2' |
101.2 |
102.3 |
C4' |
C3' |
H3' |
118.0 |
110.2 |
O4' |
C1' |
C2' |
108.8 |
107.6 |
O4' |
C1' |
N9 |
112.3 |
109.4 |
O4' |
C1' |
H1' |
108.2 |
108.3 |
O3' |
C3' |
C2' |
107.3 |
113.5 |
O3' |
C3' |
H3' |
112.8 |
109.0 |
C3' |
O3' |
HO3' |
109.5 |
106.3 |
C2' |
C3' |
H3' |
113.8 |
109.6 |
C3' |
C2' |
O2' |
|
111.2 |
C3' |
C2' |
C1' |
102.4 |
102.8 |
C3' |
C2' |
H2' |
145.8 |
112.6 |
O2' |
C2' |
C1' |
|
109.2 |
O2' |
C2' |
H2' |
|
106.9 |
C2' |
O2' |
HO2' |
|
107.3 |
C1' |
C2' |
H2' |
111.8 |
114.1 |
C2' |
C1' |
N9 |
110.0 |
113.6 |
C2' |
C1' |
H1' |
110.5 |
112.6 |
N9 |
C1' |
H1' |
107.0 |
105.2 |
C1' |
N9 |
C8 |
130.8 |
126.1 |
C1' |
N9 |
C4 |
124.6 |
126.9 |
C8 |
N9 |
C4 |
104.2 |
106.9 |
N9 |
C8 |
N7 |
116.7 |
112.2 |
N9 |
C8 |
H8 |
121.6 |
122.2 |
N9 |
C4 |
C5 |
106.8 |
105.2 |
N9 |
C4 |
N3 |
126.9 |
127.5 |
N7 |
C8 |
H8 |
121.7 |
125.6 |
C8 |
N7 |
C5 |
101.4 |
104.8 |
N7 |
C5 |
C6 |
132.8 |
132.4 |
N7 |
C5 |
C4 |
110.8 |
110.8 |
C6 |
C5 |
C4 |
116.5 |
116.8 |
C5 |
C6 |
N6 |
122.0 |
120.7 |
C5 |
C6 |
N1 |
117.4 |
119.1 |
C5 |
C4 |
N3 |
126.3 |
127.3 |
N6 |
C6 |
N1 |
120.5 |
120.2 |
C6 |
N6 |
HN61 |
109.5 |
119.5 |
C6 |
N6 |
HN62 |
109.5 |
119.4 |
C6 |
N1 |
C2 |
119.6 |
117.5 |
HN61 |
N6 |
HN62 |
109.4 |
120.8 |
N1 |
C2 |
N3 |
128.4 |
128.9 |
N1 |
C2 |
H2 |
115.8 |
115.5 |
N3 |
C2 |
H2 |
115.8 |
115.6 |
C2 |
N3 |
C4 |
111.7 |
110.4 |
Torsion Angles for ADS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
S2P |
P |
O1P |
S3P |
|
119.4 |
S2P |
P |
O1P |
O5' |
|
239.5 |
O1P |
P |
S2P |
HSP2 |
|
61.3 |
S3P |
P |
O1P |
O5' |
|
120.1 |
O1P |
P |
S3P |
HSP3 |
|
299.2 |
O1P |
P |
O5' |
C5' |
|
180.0 |
O1P |
P |
S2P |
S3P |
|
241.3 |
O1P |
P |
S2P |
O5' |
|
120.7 |
S3P |
P |
S2P |
O5' |
|
239.4 |
S2P |
P |
S3P |
HSP3 |
|
180.4 |
S2P |
P |
O5' |
C5' |
|
299.8 |
O1P |
P |
S3P |
S2P |
|
118.8 |
O1P |
P |
S3P |
O5' |
|
239.6 |
S2P |
P |
S3P |
O5' |
|
120.8 |
S3P |
P |
S2P |
HSP2 |
|
179.9 |
S3P |
P |
O5' |
C5' |
|
60.5 |
O1P |
P |
O5' |
S2P |
|
240.2 |
O1P |
P |
O5' |
S3P |
|
119.5 |
S2P |
P |
O5' |
S3P |
|
239.3 |
O5' |
P |
S2P |
HSP2 |
|
300.6 |
O5' |
P |
S3P |
HSP3 |
|
59.6 |
P |
O5' |
C5' |
C4' |
|
210.0 |
P |
O5' |
C5' |
H5'1 |
|
330.1 |
P |
O5' |
C5' |
H5'2 |
|
89.9 |
HSP2 |
S2P |
P |
S3P |
|
179.9 |
HSP2 |
S2P |
P |
O5' |
|
300.6 |
HSP3 |
S3P |
P |
O5' |
|
59.6 |
C4' |
C5' |
O5' |
H5'1 |
240.0 |
239.9 |
C4' |
C5' |
O5' |
H5'2 |
122.5 |
120.1 |
O5' |
C5' |
C4' |
O4' |
142.3 |
62.1 |
O5' |
C5' |
C4' |
C3' |
270.2 |
179.5 |
O5' |
C5' |
C4' |
H4' |
25.3 |
303.8 |
H5'1 |
C5' |
O5' |
H5'2 |
242.5 |
240.2 |
O5' |
C5' |
C4' |
H5'1 |
120.0 |
119.6 |
O5' |
C5' |
C4' |
H5'2 |
237.5 |
240.5 |
H5'1 |
C5' |
C4' |
H5'2 |
117.5 |
120.9 |
O4' |
C4' |
C5' |
C3' |
232.1 |
242.6 |
O4' |
C4' |
C5' |
H4' |
117.1 |
118.3 |
C5' |
C4' |
O4' |
C1' |
116.7 |
148.9 |
C3' |
C4' |
C5' |
H4' |
244.9 |
235.7 |
C5' |
C4' |
C3' |
O3' |
150.0 |
81.0 |
C5' |
C4' |
C3' |
C2' |
260.7 |
202.9 |
C5' |
C4' |
C3' |
H3' |
25.5 |
319.4 |
O5' |
C5' |
H5'1 |
C4' |
245.6 |
240.8 |
O5' |
C5' |
H5'1 |
H5'2 |
122.8 |
119.5 |
C4' |
C5' |
H5'1 |
H5'2 |
237.2 |
238.8 |
H5'1 |
C5' |
C4' |
O4' |
22.3 |
302.6 |
H5'1 |
C5' |
C4' |
C3' |
150.2 |
60.0 |
H5'1 |
C5' |
C4' |
H4' |
265.3 |
184.3 |
O5' |
C5' |
H5'2 |
C4' |
116.3 |
119.2 |
O5' |
C5' |
H5'2 |
H5'1 |
238.1 |
240.5 |
C4' |
C5' |
H5'2 |
H5'1 |
121.8 |
121.2 |
H5'2 |
C5' |
C4' |
O4' |
264.8 |
181.7 |
H5'2 |
C5' |
C4' |
C3' |
32.7 |
299.0 |
H5'2 |
C5' |
C4' |
H4' |
147.8 |
63.4 |
O4' |
C4' |
C5' |
H5'1 |
22.3 |
302.6 |
O4' |
C4' |
C5' |
H5'2 |
264.8 |
181.7 |
C5' |
C4' |
O4' |
C3' |
129.6 |
122.4 |
C5' |
C4' |
O4' |
H4' |
245.3 |
241.5 |
C3' |
C4' |
O4' |
H4' |
115.6 |
119.1 |
O4' |
C4' |
C3' |
O3' |
278.4 |
201.0 |
O4' |
C4' |
C3' |
C2' |
29.1 |
322.9 |
O4' |
C4' |
C3' |
H3' |
153.9 |
79.4 |
C4' |
O4' |
C1' |
C2' |
351.3 |
354.9 |
C4' |
O4' |
C1' |
N9 |
229.3 |
231.0 |
C4' |
O4' |
C1' |
H1' |
111.4 |
116.8 |
C3' |
C4' |
C5' |
H5'1 |
150.2 |
60.0 |
C3' |
C4' |
C5' |
H5'2 |
32.7 |
299.0 |
C5' |
C4' |
C3' |
O4' |
231.6 |
240.0 |
C5' |
C4' |
C3' |
H4' |
114.3 |
122.9 |
O4' |
C4' |
C3' |
H4' |
242.8 |
242.9 |
C3' |
C4' |
O4' |
C1' |
347.0 |
26.5 |
O3' |
C3' |
C4' |
C2' |
249.3 |
238.1 |
O3' |
C3' |
C4' |
H3' |
124.4 |
121.6 |
C4' |
C3' |
O3' |
HO3' |
62.3 |
136.4 |
C2' |
C3' |
C4' |
H3' |
235.2 |
243.5 |
C4' |
C3' |
C2' |
O2' |
|
276.0 |
C4' |
C3' |
C2' |
C1' |
328.5 |
32.8 |
C4' |
C3' |
C2' |
H2' |
147.9 |
156.0 |
H4' |
C4' |
C5' |
H5'1 |
265.3 |
184.3 |
H4' |
C4' |
C5' |
H5'2 |
147.8 |
63.4 |
C5' |
C4' |
H4' |
O4' |
119.7 |
119.2 |
C5' |
C4' |
H4' |
C3' |
238.9 |
234.4 |
O4' |
C4' |
H4' |
C3' |
119.2 |
115.2 |
H4' |
C4' |
O4' |
C1' |
231.4 |
267.4 |
H4' |
C4' |
C3' |
O3' |
35.6 |
318.1 |
H4' |
C4' |
C3' |
C2' |
146.3 |
80.0 |
H4' |
C4' |
C3' |
H3' |
271.2 |
196.5 |
C1' |
O4' |
C4' |
C3' |
347.0 |
26.5 |
C1' |
O4' |
C4' |
H4' |
231.4 |
267.4 |
C3' |
C2' |
C1' |
O4' |
26.3 |
342.0 |
O2' |
C2' |
C1' |
O4' |
|
100.1 |
O4' |
C1' |
C2' |
H2' |
206.7 |
219.7 |
C2' |
C1' |
O4' |
N9 |
122.1 |
123.9 |
C2' |
C1' |
O4' |
H1' |
239.9 |
238.0 |
N9 |
C1' |
O4' |
H1' |
117.8 |
114.1 |
O4' |
C1' |
N9 |
C8 |
82.2 |
33.8 |
O4' |
C1' |
N9 |
C4 |
253.4 |
213.9 |
O3' |
C3' |
C4' |
H4' |
35.6 |
318.1 |
C4' |
C3' |
O3' |
C2' |
106.0 |
115.3 |
C4' |
C3' |
O3' |
H3' |
232.2 |
237.7 |
C2' |
C3' |
O3' |
H3' |
126.1 |
122.4 |
O3' |
C3' |
C2' |
O2' |
|
36.9 |
O3' |
C3' |
C2' |
C1' |
75.4 |
153.7 |
O3' |
C3' |
C2' |
H2' |
254.8 |
276.9 |
C2' |
C3' |
C4' |
H4' |
146.3 |
80.0 |
C4' |
C3' |
C2' |
O3' |
253.1 |
239.1 |
C4' |
C3' |
C2' |
H3' |
127.6 |
117.0 |
O4' |
C1' |
C2' |
C3' |
26.3 |
342.0 |
O3' |
C3' |
C2' |
H3' |
234.5 |
237.9 |
C2' |
C3' |
O3' |
HO3' |
316.3 |
21.1 |
O2' |
C2' |
C3' |
C1' |
|
243.2 |
O2' |
C2' |
C3' |
H2' |
|
120.0 |
C3' |
C2' |
O2' |
HO2' |
|
78.0 |
C1' |
C2' |
C3' |
H2' |
180.6 |
236.8 |
C3' |
C2' |
C1' |
N9 |
149.8 |
103.3 |
C3' |
C2' |
C1' |
H1' |
267.6 |
222.7 |
H3' |
C3' |
C4' |
H4' |
271.2 |
196.5 |
C4' |
C3' |
H3' |
O3' |
119.1 |
123.4 |
C4' |
C3' |
H3' |
C2' |
241.7 |
248.2 |
O3' |
C3' |
H3' |
C2' |
122.6 |
124.8 |
H3' |
C3' |
O3' |
HO3' |
190.2 |
258.7 |
H3' |
C3' |
C2' |
O2' |
|
159.0 |
H3' |
C3' |
C2' |
C1' |
200.9 |
275.8 |
H3' |
C3' |
C2' |
H2' |
20.3 |
39.0 |
HO3' |
O3' |
C3' |
C2' |
316.3 |
21.1 |
HO3' |
O3' |
C3' |
H3' |
190.2 |
258.7 |
O4' |
C1' |
C2' |
O2' |
|
100.1 |
O2' |
C2' |
C3' |
H3' |
|
159.0 |
C3' |
C2' |
O2' |
C1' |
|
112.8 |
C3' |
C2' |
O2' |
H2' |
|
236.7 |
C1' |
C2' |
O2' |
H2' |
|
123.9 |
O2' |
C2' |
C1' |
N9 |
|
221.4 |
O2' |
C2' |
C1' |
H1' |
|
340.8 |
O4' |
C1' |
C2' |
N9 |
236.6 |
238.7 |
O4' |
C1' |
C2' |
H1' |
118.7 |
119.3 |
C1' |
C2' |
C3' |
H3' |
200.9 |
275.8 |
C3' |
C2' |
C1' |
O2' |
|
241.9 |
C3' |
C2' |
C1' |
H2' |
179.6 |
122.3 |
O2' |
C2' |
C1' |
H2' |
|
240.4 |
C1' |
C2' |
O2' |
HO2' |
|
325.2 |
N9 |
C1' |
C2' |
H1' |
242.1 |
240.6 |
C2' |
C1' |
N9 |
C8 |
320.8 |
273.6 |
C2' |
C1' |
N9 |
C4 |
132.0 |
93.7 |
H2' |
C2' |
C3' |
H3' |
20.3 |
39.0 |
C3' |
C2' |
H2' |
O2' |
|
122.4 |
C3' |
C2' |
H2' |
C1' |
180.6 |
243.3 |
O2' |
C2' |
H2' |
C1' |
|
120.9 |
H2' |
C2' |
O2' |
HO2' |
|
201.3 |
H2' |
C2' |
C1' |
N9 |
330.1 |
341.0 |
H2' |
C2' |
C1' |
H1' |
88.0 |
100.4 |
HO2' |
O2' |
C2' |
C1' |
|
325.2 |
HO2' |
O2' |
C2' |
H2' |
|
201.3 |
O4' |
C1' |
N9 |
C2' |
121.4 |
120.3 |
O4' |
C1' |
N9 |
H1' |
241.4 |
243.9 |
N9 |
C1' |
C2' |
H2' |
330.1 |
341.0 |
C2' |
C1' |
N9 |
H1' |
120.1 |
123.6 |
C8 |
N9 |
C1' |
C4 |
188.8 |
179.9 |
C1' |
N9 |
C8 |
N7 |
171.7 |
180.0 |
C1' |
N9 |
C8 |
H8 |
351.7 |
0.1 |
C1' |
N9 |
C4 |
C5 |
187.2 |
180.0 |
C1' |
N9 |
C4 |
N3 |
5.3 |
359.9 |
O4' |
C1' |
H1' |
C2' |
240.9 |
241.1 |
O4' |
C1' |
H1' |
N9 |
121.2 |
116.9 |
H1' |
C1' |
C2' |
H2' |
88.0 |
100.4 |
C2' |
C1' |
H1' |
N9 |
240.2 |
235.8 |
H1' |
C1' |
N9 |
C8 |
200.8 |
150.0 |
H1' |
C1' |
N9 |
C4 |
12.0 |
330.1 |
C8 |
N9 |
C1' |
H1' |
200.8 |
150.0 |
C1' |
N9 |
C8 |
C4 |
172.5 |
180.1 |
C8 |
N9 |
C4 |
C5 |
0.3 |
0.0 |
C8 |
N9 |
C4 |
N3 |
178.4 |
180.0 |
N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
N7 |
C5 |
0.9 |
0.0 |
C4 |
N9 |
C1' |
H1' |
12.0 |
330.1 |
C1' |
N9 |
C4 |
C8 |
186.9 |
179.9 |
C4 |
N9 |
C8 |
N7 |
359.2 |
360.0 |
C4 |
N9 |
C8 |
H8 |
179.2 |
180.0 |
N7 |
C5 |
C4 |
N9 |
0.2 |
360.0 |
C6 |
C5 |
C4 |
N9 |
179.5 |
180.0 |
C5 |
C4 |
N9 |
N3 |
182.0 |
180.1 |
C2 |
N3 |
C4 |
N9 |
181.1 |
180.1 |
N7 |
C8 |
N9 |
C4 |
359.2 |
360.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
C8 |
N7 |
C5 |
C6 |
180.2 |
180.0 |
C8 |
N7 |
C5 |
C4 |
359.4 |
0.0 |
H8 |
C8 |
N9 |
C4 |
179.2 |
180.0 |
N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
H8 |
C8 |
N7 |
C5 |
180.9 |
180.0 |
N9 |
C4 |
C5 |
N7 |
0.2 |
360.0 |
C5 |
N7 |
C8 |
H8 |
180.9 |
180.0 |
C6 |
C5 |
N7 |
C4 |
180.8 |
180.0 |
N7 |
C5 |
C6 |
N6 |
359.8 |
360.0 |
N7 |
C5 |
C6 |
N1 |
177.6 |
180.0 |
N7 |
C5 |
C4 |
N3 |
182.1 |
180.0 |
N9 |
C4 |
C5 |
C6 |
179.5 |
180.0 |
N7 |
C5 |
C6 |
C4 |
179.2 |
180.0 |
C6 |
C5 |
C4 |
N3 |
1.5 |
0.1 |
N6 |
C6 |
C5 |
N1 |
182.2 |
180.0 |
C5 |
C6 |
N6 |
HN61 |
15.0 |
45.0 |
C5 |
C6 |
N6 |
HN62 |
135.0 |
231.2 |
C5 |
C6 |
N1 |
C2 |
1.6 |
360.0 |
N9 |
C4 |
C5 |
N3 |
178.1 |
179.9 |
N7 |
C5 |
C4 |
C6 |
180.7 |
180.0 |
C4 |
C5 |
C6 |
N6 |
180.7 |
180.0 |
C4 |
C5 |
C6 |
N1 |
358.5 |
360.0 |
C2 |
N3 |
C4 |
C5 |
358.8 |
360.0 |
N6 |
C6 |
C5 |
C4 |
180.7 |
180.0 |
C5 |
C6 |
N6 |
N1 |
177.7 |
180.0 |
N6 |
C6 |
N1 |
C2 |
179.4 |
180.0 |
HN61 |
N6 |
C6 |
HN62 |
240.0 |
173.8 |
N1 |
C6 |
C5 |
C4 |
358.5 |
360.0 |
C5 |
C6 |
N1 |
N6 |
182.2 |
180.0 |
N1 |
C6 |
N6 |
HN61 |
197.3 |
225.0 |
N1 |
C6 |
N6 |
HN62 |
317.3 |
51.2 |
C6 |
N1 |
C2 |
N3 |
358.4 |
0.1 |
C6 |
N1 |
C2 |
H2 |
178.4 |
180.0 |
HN61 |
N6 |
C6 |
N1 |
197.3 |
225.0 |
C6 |
N6 |
HN61 |
HN62 |
120.0 |
186.3 |
HN62 |
N6 |
C6 |
N1 |
317.3 |
51.2 |
C6 |
N6 |
HN62 |
HN61 |
239.9 |
173.7 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
N1 |
C2 |
N3 |
C4 |
1.3 |
359.9 |
N9 |
C4 |
N3 |
C2 |
181.1 |
180.1 |
C5 |
C4 |
N3 |
C2 |
358.8 |
360.0 |
N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
N1 |
C2 |
H2 |
N3 |
180.0 |
180.1 |
H2 |
C2 |
N3 |
C4 |
181.3 |
180.1 |
N9 |
C4 |
N3 |
C5 |
182.3 |
180.1 |
C4 |
N3 |
C2 |
H2 |
181.3 |
180.1 |