PDB Chemical Component ADP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ADP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.490 1.479
PB O2B 1.458 1.610
PB O3B 1.504 1.609
PB O3A 1.686 1.611
O2B HOB2 0.950 0.968
O3B HOB3 0.950 0.968
PA O1A 1.469 1.479
PA O2A 1.507 1.610
PA O3A 1.594 1.608
PA O5' 1.583 1.610
O2A HOA2 0.949 0.967
O5' C5' 1.442 1.429
C5' C4' 1.547 1.528
C5' H5'1 1.114 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.442 1.445
C4' C3' 1.534 1.545
C4' H4' 1.115 1.090
O4' C1' 1.456 1.444
C3' O3' 1.444 1.429
C3' C2' 1.610 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.438 1.429
C2' C1' 1.543 1.544
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.487 1.464
C1' H1' 1.115 1.090
N9 C8 1.370 1.363
N9 C4 1.380 1.372
C8 N7 1.319 1.301
C8 H8 1.103 1.080
N7 C5 1.395 1.356
C5 C6 1.447 1.405
C5 C4 1.369 1.404
C6 N6 1.333 1.384
C6 N1 1.338 1.329
N6 HN61 1.019 0.970
N6 HN62 1.020 0.970
N1 C2 1.346 1.320
C2 N3 1.335 1.316
C2 H2 1.103 1.080
N3 C4 1.369 1.329

Bond Angles for ADP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 106.8 109.5
O1B PB O3B 119.4 109.5
O1B PB O3A 99.9 109.5
O2B PB O3B 116.9 109.5
O2B PB O3A 106.2 109.4
PB O2B HOB2 106.8 106.8
O3B PB O3A 105.4 109.5
PB O3B HOB3 119.4 106.8
PB O3A PA 126.7 106.8
O1A PA O2A 105.9 109.4
O1A PA O3A 115.3 109.5
O1A PA O5' 102.7 109.4
O2A PA O3A 114.0 109.4
O2A PA O5' 113.7 109.5
PA O2A HOA2 106.0 106.8
O3A PA O5' 104.7 109.5
PA O5' C5' 122.0 106.9
O5' C5' C4' 103.7 109.5
O5' C5' H5'1 114.4 109.5
O5' C5' H5'2 114.4 109.4
C4' C5' H5'1 114.4 109.5
C4' C5' H5'2 114.4 109.5
C5' C4' O4' 109.7 110.4
C5' C4' C3' 106.8 110.5
C5' C4' H4' 110.5 110.4
H5'1 C5' H5'2 96.1 109.5
O4' C4' C3' 107.9 104.8
O4' C4' H4' 109.6 110.3
C4' O4' C1' 104.8 105.3
C3' C4' H4' 112.2 110.3
C4' C3' O3' 108.3 110.5
C4' C3' C2' 102.6 104.1
C4' C3' H3' 113.7 110.5
O4' C1' C2' 103.7 104.9
O4' C1' N9 106.1 110.4
O4' C1' H1' 121.2 110.4
O3' C3' C2' 107.2 110.6
O3' C3' H3' 109.7 110.5
C3' O3' HO3' 108.3 106.8
C2' C3' H3' 114.8 110.6
C3' C2' O2' 122.1 110.5
C3' C2' C1' 101.9 104.0
C3' C2' H2' 106.8 110.5
O2' C2' C1' 110.7 110.8
O2' C2' H2' 97.4 110.5
C2' O2' HO2' 122.1 106.8
C1' C2' H2' 119.1 110.4
C2' C1' N9 123.2 110.4
C2' C1' H1' 103.4 110.4
N9 C1' H1' 100.7 110.2
C1' N9 C8 127.7 126.2
C1' N9 C4 125.9 126.4
C8 N9 C4 104.9 107.4
N9 C8 N7 115.4 110.0
N9 C8 H8 124.0 125.0
N9 C4 C5 105.8 106.1
N9 C4 N3 126.2 134.9
N7 C8 H8 120.6 125.0
C8 N7 C5 101.7 109.4
N7 C5 C6 131.5 134.6
N7 C5 C4 112.2 107.1
C6 C5 C4 116.4 118.2
C5 C6 N6 120.9 120.8
C5 C6 N1 114.6 118.4
C5 C4 N3 127.9 119.0
N6 C6 N1 124.5 120.8
C6 N6 HN61 120.9 120.0
C6 N6 HN62 108.1 120.0
C6 N1 C2 124.7 121.2
HN61 N6 HN62 108.2 120.0
N1 C2 N3 124.4 122.5
N1 C2 H2 118.3 118.7
N3 C2 H2 117.3 118.8
C2 N3 C4 112.0 120.7

Torsion Angles for ADP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 224.5 120.0
O2B PB O1B O3A 110.4 240.1
O1B PB O2B HOB2 180.0 299.9
O3B PB O1B O3A 245.9 120.0
O1B PB O3B HOB3 180.0 180.0
O1B PB O3A PA 173.7 60.0
O1B PB O2B O3B 136.8 240.0
O1B PB O2B O3A 254.1 120.0
O3B PB O2B O3A 117.3 240.0
O2B PB O3B HOB3 311.2 60.0
O2B PB O3A PA 62.8 179.9
O1B PB O3B O2B 228.8 120.0
O1B PB O3B O3A 111.1 240.0
O2B PB O3B O3A 242.3 120.0
O3B PB O2B HOB2 43.2 60.0
O3B PB O3A PA 298.1 300.0
O1B PB O3A O2B 110.9 240.0
O1B PB O3A O3B 235.6 120.0
O2B PB O3A O3B 124.7 240.0
O3A PB O2B HOB2 285.9 180.0
O3A PB O3B HOB3 69.0 300.0
O1A PA O3A PB 311.3 300.0
O2A PA O3A PB 74.2 60.0
PB O3A PA O5' 199.2 180.0
HOB2 O2B PB O3B 43.2 60.0
HOB2 O2B PB O3A 285.9 180.0
HOB3 O3B PB O3A 69.0 300.0
PB O3A PA O1A 311.3 300.0
O2A PA O1A O3A 232.9 240.0
O2A PA O1A O5' 119.6 119.9
O1A PA O2A HOA2 180.0 180.1
O3A PA O1A O5' 246.7 239.9
O1A PA O5' C5' 293.9 60.0
PB O3A PA O2A 74.2 60.0
O1A PA O2A O3A 127.9 120.0
O1A PA O2A O5' 247.9 240.1
O3A PA O2A O5' 120.0 120.0
O2A PA O5' C5' 179.9 300.1
O1A PA O3A O2A 237.1 240.0
O1A PA O3A O5' 112.1 120.0
O2A PA O3A O5' 235.0 240.0
O3A PA O2A HOA2 52.1 60.0
O3A PA O5' C5' 54.8 180.1
O1A PA O5' O2A 114.0 119.9
O1A PA O5' O3A 239.2 239.9
O2A PA O5' O3A 125.1 120.0
O5' PA O2A HOA2 292.1 300.0
PA O5' C5' C4' 148.1 180.0
PA O5' C5' H5'1 273.4 60.0
PA O5' C5' H5'2 22.8 300.0
HOA2 O2A PA O3A 52.1 60.0
HOA2 O2A PA O5' 292.1 300.0
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 63.7 61.4
O5' C5' C4' C3' 180.4 176.9
O5' C5' C4' H4' 302.8 299.2
H5'1 C5' O5' H5'2 250.6 120.0
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'2 234.7 119.9
H5'1 C5' C4' H5'2 109.5 239.9
O4' C4' C5' C3' 243.3 244.6
O4' C4' C5' H4' 120.9 122.2
C5' C4' O4' C1' 151.9 159.5
C3' C4' C5' H4' 237.6 237.7
C5' C4' C3' O3' 116.9 98.3
C5' C4' C3' C2' 230.0 217.0
C5' C4' C3' H3' 354.6 335.8
O5' C5' H5'1 C4' 240.5 120.0
O5' C5' H5'1 H5'2 120.3 240.1
C4' C5' H5'1 H5'2 239.7 120.1
H5'1 C5' C4' O4' 298.4 181.4
H5'1 C5' C4' C3' 55.1 296.9
H5'1 C5' C4' H4' 177.5 59.2
O5' C5' H5'2 C4' 119.4 240.0
O5' C5' H5'2 H5'1 239.8 120.0
C4' C5' H5'2 H5'1 120.3 239.9
H5'2 C5' C4' O4' 188.9 301.5
H5'2 C5' C4' C3' 305.7 57.0
H5'2 C5' C4' H4' 68.1 179.3
O4' C4' C5' H5'1 298.4 181.4
O4' C4' C5' H5'2 188.9 301.5
C5' C4' O4' C3' 116.0 119.0
C5' C4' O4' H4' 238.5 237.7
C3' C4' O4' H4' 122.5 118.7
O4' C4' C3' O3' 234.7 217.2
O4' C4' C3' C2' 347.8 336.0
O4' C4' C3' H3' 112.5 94.7
C4' O4' C1' C2' 314.9 319.6
C4' O4' C1' N9 183.8 200.6
C4' O4' C1' H1' 70.1 78.5
C3' C4' C5' H5'1 55.1 296.9
C3' C4' C5' H5'2 305.7 57.0
C5' C4' C3' O4' 242.1 241.1
C5' C4' C3' H4' 121.3 122.4
O4' C4' C3' H4' 239.2 241.3
C3' C4' O4' C1' 35.9 40.5
O3' C3' C4' C2' 246.9 241.3
O3' C3' C4' H3' 122.2 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 235.3 241.3
C4' C3' C2' O2' 221.9 241.2
C4' C3' C2' C1' 345.8 0.1
C4' C3' C2' H2' 111.5 118.6
H4' C4' C5' H5'1 177.5 59.2
H4' C4' C5' H5'2 68.1 179.3
C5' C4' H4' O4' 121.0 122.3
C5' C4' H4' C3' 240.8 237.6
O4' C4' H4' C3' 119.9 115.3
H4' C4' O4' C1' 273.4 281.8
H4' C4' C3' O3' 355.5 336.0
H4' C4' C3' C2' 108.7 94.7
H4' C4' C3' H3' 233.3 213.4
C1' O4' C4' C3' 35.9 40.5
C1' O4' C4' H4' 273.4 281.8
C3' C2' C1' O4' 35.7 23.8
O2' C2' C1' O4' 166.9 142.6
O4' C1' C2' H2' 278.5 265.3
C2' C1' O4' N9 131.1 119.0
C2' C1' O4' H1' 244.8 241.1
N9 C1' O4' H1' 113.7 122.1
O4' C1' N9 C8 59.6 27.1
O4' C1' N9 C4 223.5 207.0
O3' C3' C4' H4' 355.5 336.0
C4' C3' O3' C2' 110.1 114.7
C4' C3' O3' H3' 235.4 237.5
C2' C3' O3' H3' 125.3 122.8
O3' C3' C2' O2' 335.8 359.9
O3' C3' C2' C1' 99.8 118.8
O3' C3' C2' H2' 225.4 237.3
C2' C3' C4' H4' 108.7 94.7
C4' C3' C2' O3' 246.1 241.3
C4' C3' C2' H3' 123.9 118.6
O4' C1' C2' C3' 35.7 23.8
O3' C3' C2' H3' 237.9 237.3
C2' C3' O3' HO3' 70.0 65.3
O2' C2' C3' C1' 236.1 241.0
O2' C2' C3' H2' 110.4 122.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 234.3 241.5
C3' C2' C1' N9 155.8 142.8
C3' C2' C1' H1' 268.4 264.9
H3' C3' C4' H4' 233.3 213.4
C4' C3' H3' O3' 121.4 122.6
C4' C3' H3' C2' 242.2 245.3
O3' C3' H3' C2' 120.7 122.8
H3' C3' O3' HO3' 304.7 302.5
H3' C3' C2' O2' 98.0 122.5
H3' C3' C2' C1' 221.9 241.5
H3' C3' C2' H2' 347.6 360.0
HO3' O3' C3' C2' 70.0 65.3
HO3' O3' C3' H3' 304.7 302.5
O4' C1' C2' O2' 166.9 142.6
O2' C2' C3' H3' 98.0 122.5
C3' C2' O2' C1' 119.8 114.7
C3' C2' O2' H2' 244.8 237.4
C1' C2' O2' H2' 125.0 122.7
O2' C2' C1' N9 287.0 261.5
O2' C2' C1' H1' 39.6 23.7
O4' C1' C2' N9 239.9 241.1
O4' C1' C2' H1' 127.3 118.9
C1' C2' C3' H3' 221.9 241.5
C3' C2' C1' O2' 228.7 241.3
C3' C2' C1' H2' 117.1 118.5
O2' C2' C1' H2' 248.4 237.3
C1' C2' O2' HO2' 60.2 183.8
N9 C1' C2' H1' 247.4 237.9
C2' C1' N9 C8 300.7 271.5
C2' C1' N9 C4 104.6 91.4
H2' C2' C3' H3' 347.6 360.0
C3' C2' H2' O2' 126.8 122.6
C3' C2' H2' C1' 245.5 245.5
O2' C2' H2' C1' 118.7 122.9
H2' C2' O2' HO2' 295.2 61.1
H2' C2' C1' N9 38.6 24.3
H2' C2' C1' H1' 151.2 146.4
HO2' O2' C2' C1' 60.2 183.8
HO2' O2' C2' H2' 295.2 61.1
O4' C1' N9 C2' 118.9 115.6
O4' C1' N9 H1' 232.8 237.8
N9 C1' C2' H2' 38.6 24.3
C2' C1' N9 H1' 113.9 122.2
C8 N9 C1' C4 196.1 180.1
C1' N9 C8 N7 164.2 180.0
C1' N9 C8 H8 344.2 359.9
C1' N9 C4 C5 195.3 180.3
C1' N9 C4 N3 13.9 0.1
O4' C1' H1' C2' 244.7 244.5
O4' C1' H1' N9 116.5 122.2
H1' C1' C2' H2' 151.2 146.4
C2' C1' H1' N9 231.8 237.8
H1' C1' N9 C8 186.7 149.3
H1' C1' N9 C4 350.6 329.2
C8 N9 C1' H1' 186.7 149.3
C1' N9 C8 C4 166.6 179.9
C8 N9 C4 C5 2.1 0.2
C8 N9 C4 N3 180.8 180.0
N7 C8 N9 H8 180.1 180.1
N9 C8 N7 C5 1.4 359.7
C4 N9 C1' H1' 350.6 329.2
C1' N9 C4 C8 193.1 180.1
C4 N9 C8 N7 357.7 0.1
C4 N9 C8 H8 177.6 180.0
N7 C5 C4 N9 358.5 359.6
C6 C5 C4 N9 178.6 180.4
C5 C4 N9 N3 181.4 180.2
C2 N3 C4 N9 181.8 180.0
N7 C8 N9 C4 357.7 0.1
N9 C8 N7 H8 179.9 179.9
C8 N7 C5 C6 180.1 179.5
C8 N7 C5 C4 0.1 0.4
H8 C8 N9 C4 177.6 180.0
N9 C8 H8 N7 180.1 180.1
H8 C8 N7 C5 181.4 179.8
N9 C4 C5 N7 358.5 359.6
C5 N7 C8 H8 181.4 179.8
C6 C5 N7 C4 179.9 179.1
N7 C5 C6 N6 0.9 0.7
N7 C5 C6 N1 180.7 180.4
N7 C5 C4 N3 179.9 179.8
N9 C4 C5 C6 178.6 180.4
N7 C5 C6 C4 180.1 181.0
C6 C5 C4 N3 359.9 0.5
N6 C6 C5 N1 180.2 180.3
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.7 359.5
C5 C6 N1 C2 358.5 0.3
N9 C4 C5 N3 178.6 179.8
N7 C5 C4 C6 180.0 179.2
C4 C5 C6 N6 180.9 179.7
C4 C5 C6 N1 0.7 359.4
C2 N3 C4 C5 0.1 359.8
N6 C6 C5 C4 180.9 179.7
C5 C6 N6 N1 179.8 179.7
N6 C6 N1 C2 178.3 180.0
HN61 N6 C6 HN62 125.3 180.2
N1 C6 C5 C4 0.7 359.4
C5 C6 N1 N6 180.2 180.3
N1 C6 N6 HN61 0.2 0.0
N1 C6 N6 HN62 234.9 179.8
C6 N1 C2 N3 1.7 0.0
C6 N1 C2 H2 181.7 179.9
HN61 N6 C6 N1 0.2 0.0
C6 N6 HN61 HN62 234.7 179.8
HN62 N6 C6 N1 234.9 179.8
C6 N6 HN62 HN61 132.5 180.2
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 359.1 359.9
N9 C4 N3 C2 181.8 180.0
C5 C4 N3 C2 0.1 359.8
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 179.1 180.0
N9 C4 N3 C5 181.6 180.2
C4 N3 C2 H2 179.1 180.0