PDB Chemical Component ADL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ADL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.367 |
1.382 |
C1 |
C6 |
1.424 |
1.380 |
C1 |
HC1 |
1.103 |
1.080 |
C2 |
C3 |
1.431 |
1.384 |
C2 |
HC2 |
1.103 |
1.080 |
C3 |
C4 |
1.422 |
1.393 |
C3 |
C10 |
1.406 |
1.499 |
C4 |
C5 |
1.437 |
1.401 |
C4 |
C7 |
1.395 |
1.478 |
C5 |
C6 |
1.370 |
1.388 |
C5 |
O1 |
1.420 |
1.357 |
C6 |
HC6 |
1.103 |
1.080 |
C7 |
C8 |
1.402 |
1.476 |
C7 |
O2 |
1.223 |
1.217 |
C8 |
C9 |
1.423 |
1.394 |
C8 |
C11 |
1.432 |
1.400 |
C9 |
C10 |
1.402 |
1.498 |
C9 |
C14 |
1.432 |
1.383 |
C10 |
H101 |
1.115 |
1.090 |
C10 |
H102 |
1.116 |
1.089 |
C11 |
C12 |
1.376 |
1.387 |
C11 |
O3 |
1.442 |
1.357 |
C12 |
C13 |
1.430 |
1.381 |
C12 |
C15 |
1.532 |
1.507 |
C13 |
C14 |
1.368 |
1.382 |
C13 |
HC13 |
1.103 |
1.080 |
C14 |
HC14 |
1.103 |
1.081 |
C15 |
C16 |
1.496 |
1.506 |
C15 |
H151 |
1.115 |
1.089 |
C15 |
H152 |
1.115 |
1.090 |
C16 |
O5 |
1.230 |
1.208 |
C16 |
O4 |
1.353 |
1.342 |
O1 |
HO1 |
0.950 |
0.968 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
HO4 |
0.950 |
0.968 |
Bond Angles for ADL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
121.5 |
120.6 |
C2 |
C1 |
HC1 |
117.1 |
119.7 |
C1 |
C2 |
C3 |
121.2 |
120.6 |
C1 |
C2 |
HC2 |
117.0 |
119.7 |
C6 |
C1 |
HC1 |
121.4 |
119.7 |
C1 |
C6 |
C5 |
119.3 |
119.8 |
C1 |
C6 |
HC6 |
122.2 |
120.1 |
C3 |
C2 |
HC2 |
121.7 |
119.7 |
C2 |
C3 |
C4 |
117.1 |
119.0 |
C2 |
C3 |
C10 |
122.8 |
118.9 |
C4 |
C3 |
C10 |
120.1 |
122.1 |
C3 |
C4 |
C5 |
120.7 |
120.4 |
C3 |
C4 |
C7 |
120.9 |
119.6 |
C3 |
C10 |
C9 |
119.5 |
113.9 |
C3 |
C10 |
H101 |
108.6 |
108.6 |
C3 |
C10 |
H102 |
108.6 |
108.6 |
C5 |
C4 |
C7 |
118.4 |
119.9 |
C4 |
C5 |
C6 |
120.2 |
119.6 |
C4 |
C5 |
O1 |
117.9 |
120.2 |
C4 |
C7 |
C8 |
118.8 |
117.8 |
C4 |
C7 |
O2 |
118.0 |
121.1 |
C6 |
C5 |
O1 |
122.0 |
120.2 |
C5 |
C6 |
HC6 |
118.5 |
120.1 |
C5 |
O1 |
HO1 |
117.9 |
106.7 |
C8 |
C7 |
O2 |
123.2 |
121.1 |
C7 |
C8 |
C9 |
121.1 |
119.7 |
C7 |
C8 |
C11 |
118.6 |
120.0 |
C9 |
C8 |
C11 |
120.2 |
120.3 |
C8 |
C9 |
C10 |
119.7 |
122.1 |
C8 |
C9 |
C14 |
118.7 |
119.0 |
C8 |
C11 |
C12 |
119.1 |
119.7 |
C8 |
C11 |
O3 |
116.3 |
120.2 |
C10 |
C9 |
C14 |
121.5 |
118.9 |
C9 |
C10 |
H101 |
108.6 |
108.6 |
C9 |
C10 |
H102 |
108.6 |
108.7 |
C9 |
C14 |
C13 |
120.5 |
120.6 |
C9 |
C14 |
HC14 |
122.0 |
119.7 |
H101 |
C10 |
H102 |
101.4 |
108.3 |
C12 |
C11 |
O3 |
124.6 |
120.1 |
C11 |
C12 |
C13 |
121.1 |
119.7 |
C11 |
C12 |
C15 |
119.7 |
120.2 |
C11 |
O3 |
HO3 |
116.3 |
106.7 |
C13 |
C12 |
C15 |
119.2 |
120.2 |
C12 |
C13 |
C14 |
120.3 |
120.7 |
C12 |
C13 |
HC13 |
122.1 |
119.6 |
C12 |
C15 |
C16 |
110.7 |
109.5 |
C12 |
C15 |
H151 |
111.8 |
109.5 |
C12 |
C15 |
H152 |
111.8 |
109.5 |
C14 |
C13 |
HC13 |
117.6 |
119.7 |
C13 |
C14 |
HC14 |
117.4 |
119.7 |
C16 |
C15 |
H151 |
111.8 |
109.5 |
C16 |
C15 |
H152 |
111.8 |
109.5 |
C15 |
C16 |
O5 |
122.0 |
120.0 |
C15 |
C16 |
O4 |
123.3 |
120.0 |
H151 |
C15 |
H152 |
98.6 |
109.4 |
O5 |
C16 |
O4 |
114.7 |
120.0 |
C16 |
O4 |
HO4 |
123.3 |
120.0 |
Torsion Angles for ADL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
HC1 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
C5 |
358.9 |
359.8 |
C2 |
C1 |
C6 |
HC6 |
178.9 |
179.9 |
C3 |
C2 |
C1 |
HC2 |
180.0 |
179.9 |
C1 |
C2 |
C3 |
C4 |
358.9 |
0.3 |
C1 |
C2 |
C3 |
C10 |
179.4 |
180.5 |
C2 |
C1 |
C6 |
HC1 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
C3 |
1.7 |
0.0 |
C6 |
C1 |
C2 |
HC2 |
181.8 |
180.1 |
C4 |
C5 |
C6 |
C1 |
359.9 |
0.0 |
C1 |
C6 |
C5 |
O1 |
180.3 |
180.0 |
C5 |
C6 |
C1 |
HC6 |
180.0 |
179.9 |
C2 |
C1 |
HC1 |
C6 |
180.0 |
180.1 |
HC1 |
C1 |
C2 |
C3 |
181.7 |
180.0 |
HC1 |
C1 |
C2 |
HC2 |
1.8 |
0.1 |
HC1 |
C1 |
C6 |
C5 |
178.9 |
179.8 |
HC1 |
C1 |
C6 |
HC6 |
358.9 |
359.9 |
C3 |
C2 |
C1 |
C6 |
1.7 |
0.0 |
C3 |
C2 |
C1 |
HC1 |
181.7 |
180.0 |
C1 |
C2 |
C3 |
HC2 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
C10 |
179.5 |
179.9 |
C2 |
C3 |
C4 |
C5 |
359.9 |
359.5 |
C2 |
C3 |
C4 |
C7 |
180.4 |
179.0 |
C2 |
C3 |
C10 |
C9 |
180.1 |
197.9 |
C2 |
C3 |
C10 |
H101 |
54.8 |
76.8 |
C2 |
C3 |
C10 |
H102 |
305.3 |
319.1 |
HC2 |
C2 |
C1 |
C6 |
181.8 |
180.1 |
HC2 |
C2 |
C1 |
HC1 |
1.8 |
0.1 |
C1 |
C2 |
HC2 |
C3 |
180.0 |
179.9 |
HC2 |
C2 |
C3 |
C4 |
178.8 |
180.3 |
HC2 |
C2 |
C3 |
C10 |
359.3 |
0.4 |
C4 |
C3 |
C2 |
HC2 |
178.8 |
180.3 |
C2 |
C3 |
C4 |
C10 |
180.5 |
180.2 |
C4 |
C3 |
C10 |
C9 |
0.6 |
18.1 |
C4 |
C3 |
C10 |
H101 |
235.4 |
256.9 |
C4 |
C3 |
C10 |
H102 |
125.9 |
139.3 |
C5 |
C4 |
C3 |
C7 |
179.5 |
180.5 |
C3 |
C4 |
C5 |
C6 |
0.7 |
0.3 |
C3 |
C4 |
C5 |
O1 |
180.3 |
180.4 |
C3 |
C4 |
C7 |
C8 |
1.1 |
343.2 |
C3 |
C4 |
C7 |
O2 |
180.9 |
163.3 |
C10 |
C3 |
C2 |
HC2 |
359.3 |
0.4 |
C2 |
C3 |
C10 |
C4 |
179.5 |
179.8 |
C10 |
C3 |
C4 |
C5 |
179.4 |
179.3 |
C10 |
C3 |
C4 |
C7 |
359.9 |
358.8 |
C8 |
C9 |
C10 |
C3 |
357.9 |
342.0 |
C3 |
C10 |
C9 |
C14 |
181.7 |
162.5 |
C9 |
C10 |
C3 |
H101 |
125.2 |
121.1 |
C9 |
C10 |
C3 |
H102 |
234.7 |
238.8 |
H101 |
C10 |
C3 |
H102 |
109.5 |
117.6 |
C1 |
C6 |
C5 |
C4 |
359.9 |
0.0 |
C5 |
C4 |
C3 |
C10 |
179.4 |
179.3 |
C3 |
C4 |
C5 |
C7 |
180.5 |
179.5 |
C5 |
C4 |
C7 |
C8 |
181.6 |
162.7 |
C5 |
C4 |
C7 |
O2 |
1.4 |
342.8 |
C6 |
C5 |
C4 |
O1 |
180.4 |
180.0 |
C4 |
C5 |
C6 |
HC6 |
179.9 |
179.9 |
C4 |
C5 |
O1 |
HO1 |
180.0 |
270.0 |
C7 |
C4 |
C3 |
C10 |
359.9 |
358.8 |
C3 |
C4 |
C7 |
C5 |
179.5 |
180.5 |
C7 |
C4 |
C5 |
C6 |
180.2 |
180.8 |
C7 |
C4 |
C5 |
O1 |
359.8 |
0.9 |
C8 |
C7 |
C4 |
O2 |
180.2 |
179.9 |
C4 |
C7 |
C8 |
C9 |
357.4 |
16.8 |
C4 |
C7 |
C8 |
C11 |
172.9 |
197.2 |
C5 |
C6 |
C1 |
HC1 |
178.9 |
179.8 |
C1 |
C6 |
C5 |
HC6 |
180.0 |
180.1 |
C6 |
C5 |
C4 |
C7 |
180.2 |
180.8 |
C4 |
C5 |
C6 |
O1 |
179.6 |
180.0 |
C6 |
C5 |
O1 |
HO1 |
359.6 |
90.0 |
O1 |
C5 |
C4 |
C7 |
359.8 |
0.9 |
C4 |
C5 |
O1 |
C6 |
180.4 |
180.0 |
O1 |
C5 |
C6 |
HC6 |
0.3 |
359.9 |
HC6 |
C6 |
C1 |
HC1 |
358.9 |
359.9 |
C1 |
C6 |
HC6 |
C5 |
180.0 |
179.9 |
HC6 |
C6 |
C5 |
O1 |
0.3 |
359.9 |
C4 |
C7 |
C8 |
O2 |
179.8 |
180.1 |
C9 |
C8 |
C7 |
C11 |
184.5 |
179.6 |
C7 |
C8 |
C9 |
C10 |
3.1 |
1.1 |
C7 |
C8 |
C9 |
C14 |
179.5 |
180.6 |
C7 |
C8 |
C11 |
C12 |
181.4 |
179.8 |
C7 |
C8 |
C11 |
O3 |
3.3 |
359.4 |
C4 |
C7 |
O2 |
C8 |
180.2 |
179.9 |
O2 |
C7 |
C8 |
C9 |
177.6 |
196.8 |
O2 |
C7 |
C8 |
C11 |
353.0 |
17.2 |
C3 |
C10 |
C9 |
C8 |
357.9 |
342.0 |
C9 |
C8 |
C7 |
O2 |
177.6 |
196.8 |
C7 |
C8 |
C9 |
C11 |
175.4 |
180.4 |
C9 |
C8 |
C11 |
C12 |
356.9 |
0.3 |
C9 |
C8 |
C11 |
O3 |
178.8 |
179.9 |
C10 |
C9 |
C8 |
C14 |
183.6 |
180.5 |
C8 |
C9 |
C10 |
H101 |
123.2 |
103.1 |
C8 |
C9 |
C10 |
H102 |
232.7 |
220.8 |
C8 |
C9 |
C14 |
C13 |
357.2 |
359.8 |
C8 |
C9 |
C14 |
HC14 |
177.2 |
179.8 |
C11 |
C8 |
C7 |
O2 |
353.0 |
17.2 |
C7 |
C8 |
C11 |
C9 |
184.5 |
179.6 |
C11 |
C8 |
C9 |
C10 |
187.7 |
180.7 |
C11 |
C8 |
C9 |
C14 |
4.1 |
0.2 |
C12 |
C11 |
C8 |
O3 |
178.1 |
180.4 |
C8 |
C11 |
C12 |
C13 |
0.8 |
359.4 |
C8 |
C11 |
C12 |
C15 |
181.7 |
179.8 |
C8 |
C11 |
O3 |
HO3 |
180.0 |
90.1 |
C3 |
C10 |
C9 |
H101 |
234.8 |
238.9 |
C3 |
C10 |
C9 |
H102 |
125.3 |
121.2 |
C10 |
C9 |
C8 |
C11 |
187.7 |
180.7 |
C8 |
C9 |
C10 |
C14 |
176.3 |
179.5 |
C10 |
C9 |
C14 |
C13 |
173.5 |
179.3 |
C10 |
C9 |
C14 |
HC14 |
353.5 |
359.3 |
H101 |
C10 |
C9 |
H102 |
250.5 |
242.3 |
C14 |
C9 |
C8 |
C11 |
4.1 |
0.2 |
C8 |
C9 |
C14 |
C10 |
183.7 |
180.5 |
C14 |
C9 |
C10 |
H101 |
306.9 |
283.6 |
C14 |
C9 |
C10 |
H102 |
56.4 |
41.3 |
C12 |
C13 |
C14 |
C9 |
0.5 |
359.8 |
C9 |
C14 |
C13 |
HC13 |
180.5 |
179.9 |
C13 |
C14 |
C9 |
HC14 |
180.0 |
180.0 |
C3 |
C10 |
H101 |
C9 |
131.4 |
124.3 |
C3 |
C10 |
H101 |
H102 |
245.7 |
242.2 |
H101 |
C10 |
C9 |
C14 |
306.9 |
283.6 |
C9 |
C10 |
H101 |
H102 |
114.3 |
117.9 |
C3 |
C10 |
H102 |
C9 |
228.6 |
235.6 |
C3 |
C10 |
H102 |
H101 |
114.3 |
117.8 |
H102 |
C10 |
C9 |
C14 |
56.4 |
41.3 |
C9 |
C10 |
H102 |
H101 |
245.7 |
242.2 |
C8 |
C11 |
C12 |
O3 |
182.1 |
179.6 |
C12 |
C11 |
O3 |
HO3 |
2.1 |
269.7 |
C13 |
C12 |
C11 |
C15 |
179.1 |
179.6 |
C11 |
C12 |
C13 |
C14 |
0.5 |
0.6 |
C11 |
C12 |
C13 |
HC13 |
180.5 |
180.6 |
C11 |
C12 |
C15 |
C16 |
47.9 |
269.7 |
C11 |
C12 |
C15 |
H151 |
282.6 |
149.7 |
C11 |
C12 |
C15 |
H152 |
173.1 |
29.7 |
C8 |
C11 |
O3 |
C12 |
178.0 |
180.4 |
O3 |
C11 |
C12 |
C13 |
178.7 |
179.8 |
O3 |
C11 |
C12 |
C15 |
359.6 |
0.1 |
C9 |
C14 |
C13 |
C12 |
0.5 |
359.8 |
C13 |
C12 |
C11 |
O3 |
178.7 |
179.8 |
C11 |
C12 |
C13 |
C15 |
180.9 |
180.4 |
C13 |
C12 |
C15 |
C16 |
228.8 |
90.1 |
C13 |
C12 |
C15 |
H151 |
103.5 |
330.0 |
C13 |
C12 |
C15 |
H152 |
354.0 |
210.1 |
C14 |
C13 |
C12 |
HC13 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
HC14 |
180.5 |
179.8 |
C15 |
C12 |
C11 |
O3 |
359.6 |
0.1 |
C11 |
C12 |
C15 |
C13 |
179.1 |
179.6 |
C15 |
C12 |
C13 |
C14 |
179.6 |
180.2 |
C15 |
C12 |
C13 |
HC13 |
359.6 |
0.2 |
C16 |
C15 |
C12 |
H151 |
125.3 |
120.0 |
C16 |
C15 |
C12 |
H152 |
234.7 |
240.0 |
C12 |
C15 |
C16 |
O5 |
58.5 |
360.0 |
C12 |
C15 |
C16 |
O4 |
236.7 |
180.0 |
H151 |
C15 |
C12 |
H152 |
109.5 |
120.0 |
C9 |
C14 |
C13 |
HC14 |
180.0 |
180.0 |
C14 |
C13 |
C12 |
C15 |
179.6 |
180.2 |
C12 |
C13 |
C14 |
HC13 |
180.0 |
180.0 |
HC13 |
C13 |
C12 |
C15 |
359.6 |
0.2 |
C12 |
C13 |
HC13 |
C14 |
180.0 |
180.0 |
HC13 |
C13 |
C14 |
HC14 |
0.5 |
359.8 |
C9 |
C14 |
HC14 |
C13 |
180.0 |
180.0 |
HC14 |
C14 |
C13 |
HC13 |
0.5 |
359.8 |
C12 |
C15 |
C16 |
H151 |
234.7 |
240.0 |
C12 |
C15 |
C16 |
H152 |
125.3 |
120.0 |
H151 |
C15 |
C16 |
H152 |
250.5 |
240.0 |
O5 |
C16 |
C15 |
O4 |
181.8 |
180.0 |
C15 |
C16 |
O4 |
HO4 |
180.0 |
180.0 |
C12 |
C15 |
H151 |
C16 |
124.7 |
120.0 |
C12 |
C15 |
H151 |
H152 |
242.3 |
240.0 |
C16 |
C15 |
H151 |
H152 |
117.7 |
120.0 |
H151 |
C15 |
C16 |
O5 |
183.8 |
120.0 |
H151 |
C15 |
C16 |
O4 |
2.0 |
300.1 |
C12 |
C15 |
H152 |
C16 |
235.3 |
240.0 |
C12 |
C15 |
H152 |
H151 |
117.7 |
120.0 |
C16 |
C15 |
H152 |
H151 |
242.3 |
240.0 |
H152 |
C15 |
C16 |
O5 |
293.3 |
240.0 |
H152 |
C15 |
C16 |
O4 |
111.4 |
60.0 |
O5 |
C16 |
C15 |
H151 |
183.8 |
120.0 |
O5 |
C16 |
C15 |
H152 |
293.3 |
240.0 |
C15 |
C16 |
O5 |
O4 |
178.3 |
180.0 |
O5 |
C16 |
O4 |
HO4 |
358.3 |
0.0 |
O4 |
C16 |
C15 |
H151 |
2.0 |
300.1 |
O4 |
C16 |
C15 |
H152 |
111.4 |
60.0 |
C15 |
C16 |
O4 |
O5 |
181.7 |
180.0 |