PDB Chemical Component ADI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ADI

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.530 1.480
PB O2B 1.471 1.610
PB O3B 1.535 1.608
PB O3A 1.592 1.610
O2B HOB2 0.950 0.967
O3B HOB3 0.950 0.966
PA O1A 1.532 1.480
PA O2A 1.476 1.609
PA O3A 1.617 1.609
PA O5' 1.607 1.610
O2A HOA2 0.950 0.967
O5' C5' 1.447 1.429
C5' C4' 1.524 1.529
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
C4' O4' 1.445 1.446
C4' C3' 1.535 1.549
C4' H4' 1.114 1.090
O4' C1' 1.416 1.437
C3' C2' 1.516 1.549
C3' H3'1 1.115 1.089
C3' H3'2 1.115 1.090
C2' C1' 1.500 1.540
C2' H2'1 1.116 1.090
C2' H2'2 1.115 1.090
C1' N9 1.477 1.465
C1' H1' 1.115 1.091
N9 C8 1.394 1.361
N9 C4 1.381 1.372
C8 N7 1.301 1.302
C8 H8 1.102 1.080
N7 C5 1.381 1.355
C5 C6 1.425 1.405
C5 C4 1.389 1.405
C6 N6 1.335 1.384
C6 N1 1.374 1.328
N6 HN61 1.020 0.970
N6 HN62 1.020 0.969
N1 C2 1.354 1.319
C2 N3 1.327 1.316
C2 H2 1.103 1.080
N3 C4 1.399 1.329

Bond Angles for ADI

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 121.1 109.4
O1B PB O3B 101.2 109.5
O1B PB O3A 98.9 109.4
O2B PB O3B 116.2 109.5
O2B PB O3A 106.3 109.5
PB O2B HOB2 121.1 106.7
O3B PB O3A 111.9 109.5
PB O3B HOB3 101.2 106.8
PB O3A PA 131.9 106.8
O1A PA O2A 121.7 109.5
O1A PA O3A 102.2 109.4
O1A PA O5' 111.3 109.5
O2A PA O3A 114.2 109.5
O2A PA O5' 108.1 109.4
PA O2A HOA2 121.8 106.8
O3A PA O5' 96.3 109.5
PA O5' C5' 124.8 106.9
O5' C5' C4' 107.7 109.5
O5' C5' H5'1 112.9 109.5
O5' C5' H5'2 112.8 109.4
C4' C5' H5'1 112.8 109.5
C4' C5' H5'2 112.9 109.5
C5' C4' O4' 98.8 110.7
C5' C4' C3' 107.3 110.7
C5' C4' H4' 117.0 110.5
H5'1 C5' H5'2 97.6 109.4
O4' C4' C3' 108.4 103.6
O4' C4' H4' 116.0 110.5
C4' O4' C1' 107.8 106.8
C3' C4' H4' 108.6 110.6
C4' C3' C2' 96.6 102.1
C4' C3' H3'1 117.3 110.9
C4' C3' H3'2 117.3 110.9
O4' C1' C2' 105.3 107.5
O4' C1' N9 118.5 109.9
O4' C1' H1' 107.4 109.9
C2' C3' H3'1 117.2 110.9
C2' C3' H3'2 117.2 110.9
C3' C2' C1' 110.6 104.2
C3' C2' H2'1 111.8 110.5
C3' C2' H2'2 111.8 110.5
H3'1 C3' H3'2 93.0 110.8
C1' C2' H2'1 111.8 110.5
C1' C2' H2'2 111.8 110.5
C2' C1' N9 112.6 109.9
C2' C1' H1' 113.9 109.8
H2'1 C2' H2'2 98.5 110.6
N9 C1' H1' 99.2 109.8
C1' N9 C8 129.5 126.2
C1' N9 C4 124.2 126.3
C8 N9 C4 106.3 107.5
N9 C8 N7 112.8 110.0
N9 C8 H8 126.6 125.1
N9 C4 C5 104.7 106.0
N9 C4 N3 126.5 135.0
N7 C8 H8 120.6 124.9
C8 N7 C5 104.7 109.4
N7 C5 C6 133.1 134.7
N7 C5 C4 111.5 107.2
C6 C5 C4 115.3 118.2
C5 C6 N6 123.2 120.8
C5 C6 N1 116.7 118.5
C5 C4 N3 128.8 119.0
N6 C6 N1 120.1 120.7
C6 N6 HN61 123.2 120.0
C6 N6 HN62 107.3 120.0
C6 N1 C2 121.8 121.2
HN61 N6 HN62 107.3 120.0
N1 C2 N3 127.2 122.5
N1 C2 H2 117.6 118.8
N3 C2 H2 115.2 118.8
C2 N3 C4 110.1 120.6

Torsion Angles for ADI

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 229.8 120.1
O2B PB O1B O3A 115.2 240.1
O1B PB O2B HOB2 180.0 299.9
O3B PB O1B O3A 245.4 120.0
O1B PB O3B HOB3 180.0 180.0
O1B PB O3A PA 291.7 60.0
O1B PB O2B O3B 123.3 239.9
O1B PB O2B O3A 248.6 119.9
O3B PB O2B O3A 125.3 240.0
O2B PB O3B HOB3 313.2 59.9
O2B PB O3A PA 165.6 180.0
O1B PB O3B O2B 226.8 120.0
O1B PB O3B O3A 104.5 240.0
O2B PB O3B O3A 237.7 120.0
O3B PB O2B HOB2 56.7 60.0
O3B PB O3A PA 37.7 300.0
O1B PB O3A O2B 126.2 240.1
O1B PB O3A O3B 254.0 120.0
O2B PB O3A O3B 127.8 240.0
O3A PB O2B HOB2 291.4 180.0
O3A PB O3B HOB3 75.5 299.9
O1A PA O3A PB 46.5 60.0
O2A PA O3A PB 273.0 300.0
PB O3A PA O5' 160.0 180.0
HOB2 O2B PB O3B 56.7 60.0
HOB2 O2B PB O3A 291.4 180.0
HOB3 O3B PB O3A 75.5 299.9
PB O3A PA O1A 46.5 60.0
O2A PA O1A O3A 128.9 120.0
O2A PA O1A O5' 230.7 240.0
O1A PA O2A HOA2 180.0 180.0
O3A PA O1A O5' 101.8 120.0
O1A PA O5' C5' 349.0 300.0
PB O3A PA O2A 273.0 300.0
O1A PA O2A O3A 236.5 240.0
O1A PA O2A O5' 130.7 120.0
O3A PA O2A O5' 254.2 239.9
O2A PA O5' C5' 125.2 60.0
O1A PA O3A O2A 133.4 120.0
O1A PA O3A O5' 246.5 240.0
O2A PA O3A O5' 113.1 120.0
O3A PA O2A HOA2 303.5 300.0
O3A PA O5' C5' 243.2 180.0
O1A PA O5' O2A 223.8 240.0
O1A PA O5' O3A 105.8 120.0
O2A PA O5' O3A 241.9 239.9
O5' PA O2A HOA2 49.3 60.1
PA O5' C5' C4' 219.2 180.0
PA O5' C5' H5'1 344.4 60.0
PA O5' C5' H5'2 93.9 300.0
HOA2 O2A PA O3A 303.5 300.0
HOA2 O2A PA O5' 49.3 60.1
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 291.2 65.7
O5' C5' C4' C3' 43.8 180.0
O5' C5' C4' H4' 166.0 302.9
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.8 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 247.5 245.7
O4' C4' C5' H4' 125.2 122.7
C5' C4' O4' C1' 142.4 158.5
C3' C4' C5' H4' 237.8 237.1
C5' C4' C3' C2' 221.0 204.3
C5' C4' C3' H3'1 346.3 86.1
C5' C4' C3' H3'2 95.7 322.5
O5' C5' H5'1 C4' 237.6 120.1
O5' C5' H5'1 H5'2 118.8 240.1
C4' C5' H5'1 H5'2 241.2 120.0
H5'1 C5' C4' O4' 166.0 185.7
H5'1 C5' C4' C3' 278.5 300.0
H5'1 C5' C4' H4' 40.7 62.9
O5' C5' H5'2 C4' 122.4 239.9
O5' C5' H5'2 H5'1 241.2 120.0
C4' C5' H5'2 H5'1 118.8 240.0
H5'2 C5' C4' O4' 56.5 305.7
H5'2 C5' C4' C3' 169.0 60.0
H5'2 C5' C4' H4' 291.2 182.9
O4' C4' C5' H5'1 166.0 185.7
O4' C4' C5' H5'2 56.5 305.7
C5' C4' O4' C3' 111.7 118.7
C5' C4' O4' H4' 234.1 237.2
C3' C4' O4' H4' 122.4 118.5
O4' C4' C3' C2' 326.9 323.1
O4' C4' C3' H3'1 92.1 204.9
O4' C4' C3' H3'2 201.6 81.2
C4' O4' C1' C2' 347.1 333.8
C4' O4' C1' N9 220.0 214.2
C4' O4' C1' H1' 108.8 93.2
C3' C4' C5' H5'1 278.5 300.0
C3' C4' C5' H5'2 169.0 60.0
C5' C4' C3' O4' 254.1 241.3
C5' C4' C3' H4' 127.3 122.9
O4' C4' C3' H4' 233.2 241.6
C3' C4' O4' C1' 30.7 39.8
C2' C3' C4' H3'1 234.7 118.2
C2' C3' C4' H3'2 125.3 241.8
C4' C3' C2' C1' 25.2 20.9
C4' C3' C2' H2'1 150.4 262.2
C4' C3' C2' H2'2 259.9 139.5
H3'1 C3' C4' H3'2 250.5 123.6
H4' C4' C5' H5'1 40.7 62.9
H4' C4' C5' H5'2 291.2 182.9
C5' C4' H4' O4' 116.1 122.9
C5' C4' H4' C3' 238.4 237.1
O4' C4' H4' C3' 122.3 114.2
H4' C4' O4' C1' 268.3 281.3
H4' C4' C3' C2' 93.7 81.5
H4' C4' C3' H3'1 219.0 323.3
H4' C4' C3' H3'2 328.4 199.6
C1' O4' C4' C3' 30.7 39.8
C1' O4' C4' H4' 268.3 281.3
C3' C2' C1' O4' 350.7 1.9
O4' C1' C2' H2'1 225.5 120.6
O4' C1' C2' H2'2 116.1 243.3
C2' C1' O4' N9 127.0 119.6
C2' C1' O4' H1' 238.2 240.6
N9 C1' O4' H1' 111.2 121.0
O4' C1' N9 C8 18.3 28.3
O4' C1' N9 C4 199.7 208.3
C2' C3' C4' H4' 93.7 81.5
C4' C3' C2' H3'1 125.3 241.8
C4' C3' C2' H3'2 234.7 118.2
O4' C1' C2' C3' 350.7 1.9
H3'1 C3' C2' H3'2 109.4 236.4
C1' C2' C3' H2'1 234.7 118.7
C1' C2' C3' H2'2 125.3 241.4
C3' C2' C1' N9 121.3 121.5
C3' C2' C1' H1' 233.3 242.4
H2'1 C2' C3' H2'2 250.6 122.7
H3'1 C3' C4' H4' 219.0 323.3
C4' C3' H3'1 C2' 245.8 112.7
C4' C3' H3'1 H3'2 123.0 236.3
C2' C3' H3'1 H3'2 237.1 123.6
H3'1 C3' C2' C1' 259.9 139.1
H3'1 C3' C2' H2'1 25.1 20.4
H3'1 C3' C2' H2'2 134.6 257.8
H3'2 C3' C4' H4' 328.4 199.6
C4' C3' H3'2 C2' 114.2 247.3
C4' C3' H3'2 H3'1 237.1 123.7
C2' C3' H3'2 H3'1 122.8 236.4
H3'2 C3' C2' C1' 150.5 262.7
H3'2 C3' C2' H2'1 275.8 144.0
H3'2 C3' C2' H2'2 25.2 21.4
O4' C1' C2' N9 229.4 240.4
O4' C1' C2' H1' 117.5 119.5
C1' C2' C3' H3'1 259.9 139.1
C1' C2' C3' H3'2 150.5 262.7
C3' C2' C1' H2'1 125.2 241.3
C3' C2' C1' H2'2 234.7 118.6
H2'1 C2' C1' H2'2 109.4 237.3
N9 C1' C2' H1' 248.0 239.1
C2' C1' N9 C8 254.8 270.2
C2' C1' N9 C4 76.2 90.3
H2'1 C2' C3' H3'1 25.1 20.4
H2'1 C2' C3' H3'2 275.8 144.0
C3' C2' H2'1 C1' 235.4 114.8
C3' C2' H2'1 H2'2 117.7 237.4
C1' C2' H2'1 H2'2 242.3 122.6
H2'1 C2' C1' N9 356.1 240.2
H2'1 C2' C1' H1' 108.0 1.1
H2'2 C2' C3' H3'1 134.6 257.8
H2'2 C2' C3' H3'2 25.2 21.4
C3' C2' H2'2 C1' 124.6 245.3
C3' C2' H2'2 H2'1 242.3 122.6
C1' C2' H2'2 H2'1 117.7 237.3
H2'2 C2' C1' N9 246.6 2.8
H2'2 C2' C1' H1' 358.6 123.8
O4' C1' N9 C2' 123.5 118.1
O4' C1' N9 H1' 244.3 239.0
N9 C1' C2' H2'1 356.1 240.2
N9 C1' C2' H2'2 246.6 2.8
C2' C1' N9 H1' 120.8 120.9
C8 N9 C1' C4 178.6 180.0
C1' N9 C8 N7 183.6 180.0
C1' N9 C8 H8 3.6 0.0
C1' N9 C4 C5 177.4 180.2
C1' N9 C4 N3 357.7 360.0
O4' C1' H1' C2' 243.7 242.0
O4' C1' H1' N9 123.9 121.0
H1' C1' C2' H2'1 108.0 1.1
H1' C1' C2' H2'2 358.6 123.8
C2' C1' H1' N9 240.2 239.0
H1' C1' N9 C8 134.0 149.3
H1' C1' N9 C4 315.4 329.3
C8 N9 C1' H1' 134.0 149.3
C1' N9 C8 C4 181.2 180.0
C8 N9 C4 C5 358.5 0.3
C8 N9 C4 N3 178.8 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 357.9 359.8
C4 N9 C1' H1' 315.4 329.3
C1' N9 C4 C8 178.9 180.0
C4 N9 C8 N7 2.4 360.0
C4 N9 C8 H8 182.4 180.0
N7 C5 C4 N9 0.3 359.6
C6 C5 C4 N9 179.7 180.3
C5 C4 N9 N3 179.7 180.3
C2 N3 C4 N9 178.7 180.0
N7 C8 N9 C4 2.4 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 181.8 179.5
C8 N7 C5 C4 1.1 0.4
H8 C8 N9 C4 182.4 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 177.9 179.8
N9 C4 C5 N7 0.3 359.6
C5 N7 C8 H8 177.9 179.8
C6 C5 N7 C4 180.7 179.1
N7 C5 C6 N6 1.9 0.7
N7 C5 C6 N1 181.1 180.4
N7 C5 C4 N3 180.0 179.8
N9 C4 C5 C6 179.7 180.3
N7 C5 C6 C4 179.3 181.0
C6 C5 C4 N3 359.4 0.6
N6 C6 C5 N1 180.8 180.3
C5 C6 N6 HN61 180.0 179.8
C5 C6 N6 HN62 54.8 359.4
C5 C6 N1 C2 358.4 0.3
N9 C4 C5 N3 180.3 179.8
N7 C5 C4 C6 180.6 179.3
C4 C5 C6 N6 182.6 179.8
C4 C5 C6 N1 1.8 359.4
C2 N3 C4 C5 359.1 359.7
N6 C6 C5 C4 182.6 179.8
C5 C6 N6 N1 179.1 179.6
N6 C6 N1 C2 177.6 180.0
HN61 N6 C6 HN62 125.2 180.4
N1 C6 C5 C4 1.8 359.4
C5 C6 N1 N6 180.8 180.3
N1 C6 N6 HN61 0.8 0.1
N1 C6 N6 HN62 235.6 179.7
C6 N1 C2 N3 359.9 359.9
C6 N1 C2 H2 179.9 179.9
HN61 N6 C6 N1 0.8 0.1
C6 N6 HN61 HN62 234.8 179.6
HN62 N6 C6 N1 235.6 179.7
C6 N6 HN62 HN61 134.2 180.4
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 1.3 0.0
N9 C4 N3 C2 178.7 180.0
C5 C4 N3 C2 359.1 359.7
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 181.3 180.0
N9 C4 N3 C5 179.6 180.3
C4 N3 C2 H2 181.3 180.0